Array 1 36606-38200 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQQ01000021.1 Pseudomonas aeruginosa strain PA_150567 NODE_24_length_81547_cov_14.2398, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36606 28 100.0 32 ............................ AGCAACACCGGCAACCGCTCGGCAGCCAGCAA 36666 28 100.0 32 ............................ AGCAACACCGGCAACCGCTCGGCAGCCAGCAA 36726 28 100.0 32 ............................ AAGTGGCTGAACTCCGCCTCGGATTGGAGCGA 36786 28 100.0 32 ............................ ATGCAAGGCGCCAGTCTTTCCAGCAATCGCCA 36846 28 100.0 32 ............................ AGGCGCTGGGCTTCGGCATACTGCTCCGCGGC 36906 28 100.0 32 ............................ CACCGGGGTGGAAGTCATCGGCAACTCTATCC 36966 28 100.0 32 ............................ GCGAACTCCGAGACTGATGCGACGCGCCTCAG 37026 28 100.0 32 ............................ ACACATCACTGTTCTGCGGTACGTCGTGCCAT 37086 28 100.0 32 ............................ ATTGCAACGGCCCAATTAAGCGCTGCCCCCTC 37146 28 100.0 32 ............................ ATCCGGAGCCGGCGGCGAAGACTCCGCATTCC 37206 28 100.0 32 ............................ TCGATCTGGCTGATTGGCTGGGGCGAGAACAC 37266 28 100.0 33 ............................ CTGAACCTGTCGAAGCCTTGCCTAGGCACCACG 37327 28 100.0 32 ............................ AAGCAGATCCACGACTTCGTGAACGAGTGTGG 37387 28 100.0 32 ............................ ATCACCGGCGCGCTGGCCTTCGGCGCCCAGGC 37447 28 100.0 32 ............................ TTATCAGTAAATACGTGGCGACTTGGCCACCC 37507 28 100.0 32 ............................ TTGCTGCGTGTTGCAGCGACACCCGTTCAACA 37567 28 100.0 32 ............................ ACTGGAGATACGTGCACAGATCGGACGACACG 37627 28 100.0 32 ............................ ATATCAGTTTGCATGGTTTGCTCCTACCAAGC 37687 28 100.0 32 ............................ TTGCATCGCACCCTCCTGCTCACCGACCAGGC 37747 28 100.0 32 ............................ TGAACGTTCACGCATCACGCGCCTTTCCGGCC 37807 28 100.0 32 ............................ AGGCAGACGAGTACGCGCGGTCTCGCGAAGTG 37867 28 100.0 32 ............................ AGAACATGGCCCGGCTCCCGACGTTGCTGCGG 37927 28 100.0 32 ............................ ATGACGCAAGACGAGCTTGTCCGCCTTCTGGC 37987 28 100.0 32 ............................ GTTTGCAGGAAGCGGCGCTATCGCACCGAACT 38047 28 100.0 32 ............................ ATAGCTACGCCGAGCCAGTTGTAAGCTGACGC 38107 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA ATAGGC [38119] 38173 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 27 28 98.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAACACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGGGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48072-46724 **** Predicted by CRISPRDetect 2.4 *** >NZ_LSQQ01000021.1 Pseudomonas aeruginosa strain PA_150567 NODE_24_length_81547_cov_14.2398, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48071 28 100.0 32 ............................ ATCCGAAGGCGCCGGCAGTATGACACCCGCCA 48011 28 100.0 32 ............................ TGTACGCGACCCTTGGGAAGTACTCAAGGATC 47951 28 100.0 32 ............................ AGCTGATGCAGCATCGGCAGGTCCAACCCACC 47891 28 100.0 32 ............................ ATCCTCGCCCTGCTGGACGAGATCGACCAGCT 47831 28 100.0 32 ............................ CGGTCCTGCCAGTACTGCGGCAGGATCTGGTC 47771 28 100.0 32 ............................ AGCCTGGCGCCCTTCGAGTCCATCCAGCCCGG 47711 28 100.0 32 ............................ CATCCAATTCGCCGATCCGGCGCAAGCGCCCG 47651 28 100.0 32 ............................ ACGAAGCAGATCGCCGAATGCGGCGTCAGCGC 47591 28 100.0 32 ............................ GTGGGTGCAAATCGCGATTCTGGTCGCGTCGT 47531 28 100.0 32 ............................ TGAATATCAGCCTGCAAAGCGTCGTCGTAGTA 47471 28 100.0 32 ............................ AAGCCGGGCCGATGTTCGAGCCTGGCTGCGTG 47411 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 47351 28 100.0 32 ............................ ATGCGAGGCTGATCGAGGTGCGCGGTTCTGTT 47291 28 100.0 32 ............................ GTGCGCGGATGGCTGGTATCTCGAGCACGATT 47231 28 100.0 32 ............................ AGGCAAACAACGGAAAGATCACCACCGAAGGC 47171 28 100.0 32 ............................ AACGAAACAGGCCCAGCACAGCCGCTTGATAA 47111 28 100.0 32 ............................ ACAAGACGCTCATCGACGGCAGCATCGAGACG 47051 28 100.0 32 ............................ AAGGTGACGATGCACAGCTGTTGCGCGCGGTT 46991 28 100.0 32 ............................ ATCCTCGAACAGCCCGGGTTCGGTCGCCTCCA 46931 28 100.0 32 ............................ AGGAGTTTGCGGCCCCGCTCCCTGCGGCTCTC 46871 28 100.0 32 ............................ TTCACGGCGGGCTTGATGTCCGCGTCTACCTG 46811 28 100.0 32 ............................ TTGCCGAGTACGATGCCTGATACATGAATCCA 46751 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCAAAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //