Array 1 90445-85689 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP063997.1 Xanthomonas translucens pv. undulosa strain XtKm15 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 90444 31 100.0 35 ............................... GCGCGCAGCACAACCGGCTCGCCCTTGGCGTCCGT 90378 31 100.0 34 ............................... TCTTAAACTCCGTCCTAGTGGTGGTCTCCAAATC 90313 31 100.0 35 ............................... CGCAGCTCTTCTAGCTGAGCCTTGGCGATGTCGAG 90247 31 100.0 35 ............................... CCGATATCGCCGTGGTCTTCCAGGCCCGCCGGGTG 90181 31 100.0 34 ............................... TCTGTCCGCCCACAGCCGTGCGCTGTACTCGCTG 90116 31 100.0 35 ............................... TCGTGGTCCCGACCGCCGCAGTTCGGGCAGGTGCG 90050 31 100.0 37 ............................... GAGGCGTACCGTGGTGGAGTGTGCCCGGGCTAGGACA 89982 31 100.0 35 ............................... GAGCGCGCGCGGGTGGATGCGTTGTTCGGAAGCCC 89916 31 100.0 33 ............................... CCGATTGGCATTCGATCCACAGCTTTTTACCTG 89852 31 100.0 35 ............................... ATCAAGTATTCCGCCAACTGCCCGTCCCAAACCTT 89786 31 100.0 36 ............................... CGAATTAAATTTCCCTACCTGTACCCCAACGCCGCC 89719 31 100.0 34 ............................... CAGCCCTGGCTGACGGACACAATCCGCTCCAGTT 89654 31 100.0 32 ............................... CCGCATAAGCTCCTCCGGTGTGCCCTCTACAA 89591 31 100.0 34 ............................... CCGTTATAAAGGACACCAGCACCTACGACGGCCT 89526 31 100.0 35 ............................... CGGAGGTTGGGACCACCGCCTCGAACGGCACGGTA 89460 31 100.0 36 ............................... TGCGTCCGACTCGACCGCCTCAACCCGGGCATGCGG 89393 31 100.0 35 ............................... TTCGGAGGCTCAATTGGTGTCTCCATTGCTGTTGC 89327 31 100.0 34 ............................... CAAGACCGCGCGAGCGCGAGACGCTTTTTAGAGT 89262 31 100.0 34 ............................... CAGCGGCATGTGTGGCCGCGTGCTGCTGCCGTGC 89197 31 100.0 35 ............................... TCCTTTGCCGCTGCGCCTCCTTGTGCGCTTGTACA 89131 31 100.0 35 ............................... TGGCCCACCGCCGCGGACACCGATTGGATGTTTTG 89065 31 100.0 34 ............................... TGCTAGTTAACGCCGATGTGTCGGCGGTCCTGCT 89000 31 100.0 34 ............................... GATATTGGACATTTTCAACTCCTAATTAGTTAGA 88935 31 100.0 33 ............................... GCCTGCAGCTTCCCAAAAATCGGCGCCTGCCCA 88871 31 100.0 34 ............................... CGTGTGCCTGCTCATCCTGACGCCTCCTGCGCAG 88806 31 100.0 36 ............................... CGCATGTACACCTTCTTAGAAGCTTGTGGAGTATCC 88739 31 100.0 34 ............................... TTGGCGGCGATGCTTGCCGCAGGGATCAAGCCAG 88674 31 100.0 37 ............................... GGGATTTGGTGTTGCGTATTTGGAACGCTGAGTTGTC 88606 31 100.0 34 ............................... AATATGTACACCTTCTTAGAGGCTTGTGGAGTAT 88541 31 100.0 34 ............................... TGACAAACAATTACACCGCATGGCATGCGTGCAA 88476 31 100.0 32 ............................... TTTTTGTCCGGGTACCAGTTGCGCGGACTGCA 88413 31 80.6 35 AG..TCG.G...................... GCGCTGGGGAGCGCAATAGCGCTATCCTGTCAATG 88347 31 100.0 37 ............................... CTTGGTACGGAAGAGGAGGCTGAGGAAATGCGTCGGC 88279 31 100.0 37 ............................... TACAAGCGCATCCGTAGTGGGAAGCGCAAGCCGCCGC 88211 31 100.0 35 ............................... GATGGACGCTGAAGCGATGCTCCGCGACGACCTGG 88145 31 100.0 35 ............................... TGGTCGGGACCGCGATGTTCGACGCACAATTTTAC 88079 31 100.0 33 ............................... CAGATGCGCAACCACTCAGGGCCAGCATCGCAA 88015 31 100.0 35 ............................... CGTTACATGTGTAACCCGTGCATACTCTCAGCACG 87949 31 100.0 35 ............................... AGTGGCTACTGACCGCCAGCCTGTAGTCGTTGAGG 87883 31 100.0 34 ............................... TCACACCGGTGTGGGATTGACGTGTCGGCTATGG 87818 31 100.0 34 ............................... ACCATGGCGAGCGCAACGGTCCTCGATAACACGG 87753 31 100.0 35 ............................... TCGTGTACCTGCTCACCCTGGCACCTCCTGCGCAG 87687 31 100.0 34 ............................... AGACTACGAATCTGAATGTCGCAGGTTCGAATCC 87622 31 100.0 34 ............................... CAGCTTTCCGGATGGGGCCAGTGTTTTTGCAGGC 87557 31 100.0 35 ............................... AATTTGACGCGAGACAACCGCAACCTCGCGATCTG 87491 31 100.0 36 ............................... CAGAATCTGGTTAGCGCACCGGTAGGCAGCTACATC 87424 31 100.0 34 ............................... GTGAACGCGCCGACAACACGGTCCATCGCCGTGG 87359 31 100.0 34 ............................... ATGCAGTCAGTCCTCTCCGATTTCGCCAATATCC 87294 31 100.0 35 ............................... AGGTACGTGATCGAGAATTGCTTGATCGTGTCCGA 87228 31 100.0 34 ............................... GCCAACGACGTGACCCGAGCGCGCGCCCATGCCG 87163 31 100.0 34 ............................... TTGCATTCGGTTGGAGCATTCAAACTCCGGGCCT 87098 31 100.0 35 ............................... ACGATGTTGACCTGTTCGGGCGCGTCGGCGTAAAG 87032 31 100.0 34 ............................... TCGGTCGTGCTGCGTGAACGCGACGTAGACATCA 86967 31 100.0 35 ............................... CAGCACCCAATCCAGTGTCAGCGGTGCGAGCACTT 86901 31 100.0 34 ............................... AGGCCGTAATCCATCGCGACGGCGGGCGCAGCCG 86836 31 100.0 35 ............................... CGGTCACCAGCAGCGACGCAGCGCGCGCATCGCAG 86770 31 100.0 33 ............................... TGGCTCGCGATGCTGGACGTAGCGCCGATCGAG 86706 31 100.0 35 ............................... AACAATGGCGGTCCGTCAGGTTGGCTGCATGCAGC 86640 31 100.0 33 ............................... CTGCAGCGTGTGCGACGCGCCGGCGCCGAGCGC 86576 31 100.0 34 ............................... ACGCGCGCCCACCGCGACATGCGCTCGCAGGTGG 86511 31 100.0 36 ............................... TTGACCTCCGTCGCTATCTTCGTAGCGGCCATGGGC 86444 31 100.0 33 ............................... TCAGATTAAGCGCAGGATGCGCGAAACAAAGGT 86380 31 100.0 35 ............................... ATTGAAAACGAGCATGTCACCAAATCCCCAGCGTC 86314 31 100.0 35 ............................... GGCTTCGCGCCGCTGGTGCCGACCGTTTCGCGCCT 86248 31 100.0 34 ............................... CACGAGGACCCAAGGAGTAGCGCCTACTGCCACC 86183 31 100.0 37 ............................... TGGGCGTTTACCGTAGTGCGGCCGTCTATGCTTTCGA 86115 31 100.0 36 ............................... ACGGAGGCGCTGCTAGCAAGCATGCGCATGCCGCTG 86048 31 100.0 34 ............................... TCAGCCTGCGTTGCTTCCCGCAAGTTAGAGACCC 85983 31 100.0 36 ............................... ATGGCTCAGTCTCGCTGGCGGGTGGCCGGTGTGGCC 85916 31 100.0 35 ............................... ATATGCCCGGTAGCGGCCGTCTTCTCCCATACCCA 85850 31 100.0 33 ............................... CCGTACTACGTCACCGGCAACTTCGAGGGTGGT 85786 31 100.0 35 ............................... ACCCATGCCATGTCGTCCCGGCGCCACTCGACATC 85720 31 87.1 0 ......CG.......C.........C..... | G [85693] ========== ====== ====== ====== =============================== ===================================== ================== 73 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAGCCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAACCAAGTCATTGATTTACAAGAAAAACACTAACCTCTTCCGCTCACTACAGGTCCGCGGCGGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCCTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAATGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACGGTCCCGGCCGGCTGACCGTTCACGGTGACCTCGGCCTTGTACTTGCCCGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGCTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACATTGGTGGTGGTGGAGGAACCCTCGGTTTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAGCGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //