Array 1 44875-46367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAO01000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3273_R1 NODE_10_length_170546_cov_0.867531_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 44875 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 44936 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 44997 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 45058 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 45119 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 45180 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 45241 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 45302 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 45363 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 45424 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 45485 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 45546 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 45607 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 45668 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 45729 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 45790 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 45852 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 45913 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 45974 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 46035 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 46096 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 46157 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 46218 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 46279 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 46340 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62499-64402 **** Predicted by CRISPRDetect 2.4 *** >NZ_NAAO01000043.1 Salmonella enterica subsp. enterica serovar Typhimurium strain R9_3273_R1 NODE_10_length_170546_cov_0.867531_ID_19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 62499 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 62560 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 62621 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 62682 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 62743 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 62804 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 62865 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 62927 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 62988 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 63049 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 63110 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 63171 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 63232 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 63293 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 63354 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 63415 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 63476 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 63537 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 63598 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 63659 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 63721 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 63824 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 63885 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 63946 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 64007 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 64068 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 64129 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 64190 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 64251 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 64312 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 64373 29 96.6 0 A............................ | A [64399] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //