Array 1 73852-72875 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRG01000013.1 Saccharothrix coeruleofusca strain JCM 3313 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 73851 37 100.0 37 ..................................... GACGCGCTCCCCAGCGAGTCCGACCGGGCGCGCACCG 73777 37 100.0 34 ..................................... TTGGGGTAGCGGCGCATGGCGTCCGCGTCCCGAG 73706 37 100.0 36 ..................................... GCGGCCACCGGACTTGGAGGTGCGTCCGCCGACCTG 73633 37 100.0 37 ..................................... ATCTTCTCCCATAGCCAGTCCACCGCGTCGCCGATGA 73559 37 100.0 36 ..................................... GAGGTGCACTGGCAGCTCGCCAACGCCCGCCTGCTG 73486 37 100.0 36 ..................................... GGACTACTCCGGTGGACGCGCGGCACCTCATGAGTC 73413 37 100.0 35 ..................................... ATCCCCTCGAAGCTGTCGGACAACCCGCACGTCAA 73341 37 100.0 34 ..................................... GAGGGGATGAACCGCACGGTGCGCTGGCGGACGT 73270 37 97.3 35 .............A....................... GGCGCGGCGGTGCGGCGGTGTAGAGCTGGACTCGG 73198 37 100.0 34 ..................................... GAGCGCCACTGGTGCGACGACAGCCCCAAGCGGG 73127 37 97.3 35 ...............G..................... CCTGCTGTCGGGAGTGGCGTCCATGGTGGTCCCGC 73055 37 100.0 36 ..................................... CCAGGCCTCGCGTCCGCCGTCCTCCACGTGGTCGAA 72982 37 100.0 34 ..................................... GCGGGGCGCCGAGAGTACGACGAACTGCTCTACG 72911 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 14 37 99.6 35 GCAGCACCAGCCCTCCGGAGCTGGTGGGGATCGCAAC # Left flank : GCCTGCTCGCCCGCCACCTGCGCGGAACAACCGACACCTACCAACCCTGGACGCTCACCTGATGGAACTGCTCATCACCTACGACGTCGACACCACCACACCCGAAGGCGAACGACGACTGCGCCGCGTCGCCAAAATCTGCGAAGGCATCGGCCACAGAGTCCAGAAATCGGTCTTCGAAGTCGTCTGCACCCCACCCCAGAGACTGCACCTCGAAGCACACCTCCAAGCCACCATCGACCCCACCCTCGACTCGGTACGCATCTACCACCTCGACCGCGGCACCTTCCACACCGCCAAACACCTCGGAGCAGCCATCGACGCAGCACACCACGACCCGCTGATCATCTGATGACAGCCACAGCCCTCCGACTTCGGAACCCCAAGCGTGTTCCGACACGCCGCCAGGTCCCGAACTTCATCACGGCGTGTCATCTCATTCAGTGGGAAGTGAGAGTGTTCATGGCAGCTTCCAAAAGCGTCATCGCTGCTCAGGCAGC # Right flank : AGCGCCGTCAGCGACGGTGGTTCGTGCGTCATGGAAGCAGCGCTGGGACTCGCGTCCCAGCGGGATCGCAACTCGCAGTCCAGCACCAGCACCCGGAACCCGTCAGGGCAGCGCTGGGACTCGTGTCCCAGCGGGATCGCAACCAGCAGATCGTGATGGTGCTGGCCGGGGGCACCGGCAGCGCTGGGACTCGCGTTCCAGCGAGGATTGCAACTCACCGGGGCTGGCCTCGTCGCCGGGGCCACTCTCGGACAGCGCTGGGACTTGCGTCCCAGCGGGATCGCAACTGCATGAGCGCGATCTGCTCGGCCGGGGAGATCACGGCAGCGCTGGGACTCGCGTCCCAGCGGGATCGCAACTGAGATGGGTTCCGCCGGGCGCCGGGCGCCCAGGACGGGGTCAAACGAGCGGTGTAACTCGGGTTAAAGAGGGTTACTTGCGTCCGGCGGCCAGGCGGCCGTCGAAGGCGATCTCGAAGGCGTTGAGCGCGGGCTTCCAGC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCACCAGCCCTCCGGAGCTGGTGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 83017-81827 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRG01000013.1 Saccharothrix coeruleofusca strain JCM 3313 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 83016 37 100.0 35 ..................................... CGGCTCGCGGCGGCGGACCTGTCCTGGTCCGACCT 82944 37 100.0 34 ..................................... ATGTCATGGACGATCACGAGCTTCCCGCGTCGTA 82873 37 100.0 35 ..................................... GTAGACCATCCACTCGGTCAGCTCGCGCGAGGTGA 82801 37 100.0 35 ..................................... CAGTAGTCGTAGAGCGAGCGCGCGGTGCTCACCGC 82729 37 100.0 35 ..................................... CACACCGGCAGGTTGGTGGTCTCCTGGGTGGTCTC 82657 37 100.0 35 ..................................... GAGCACTACCGGCACGTGGTCGGCTTGGTGGACTC 82585 37 100.0 35 ..................................... GTGATCGTCGGGAAAGTCGCCCGGCGCCCAGAGCA 82513 37 100.0 36 ..................................... TTGGGCCAGAAGTGCAGCAGCTGCATCGACGCCCCG 82440 37 100.0 35 ..................................... CACCACGTCGGGATGGAAGGTCAGCAACTCCCGCT 82368 37 100.0 35 ..................................... AACGGCTGGGGACCGGCCCCCGTGCTCGGCGAATG 82296 37 100.0 36 ..................................... ACCGCGTAGGCGCCGTAGCAGTAGCCGGTGCCGCTG 82223 37 100.0 36 ..................................... ATCGCCAACGTCCTCCAGAGCTTCGCCGAGATGGAA 82150 37 97.3 34 ..........................A.......... GTGGCCAGGTCGCCGATTTGGTAGGTGTAGACCG 82079 37 97.3 36 ........................T............ AGCGTGGTGCGCTCGCTGGGTGTGCCCATCCCGGTG 82006 37 100.0 34 ..................................... GCCGCGGGGATCGTCGAGGAGGCCCGGCTGGCGG 81935 37 100.0 35 ..................................... ATGGGCAGGCGGATCGGCGAAGAACTGAAGAATAT 81863 37 94.6 0 .............................GG...... | ========== ====== ====== ====== ===================================== ==================================== ================== 17 37 99.4 35 GCAGCGCTGGGACTCGCGTCCCAGCGGGGATCGCAAC # Left flank : CGCGGTGGCCAACTCGACTATCCGAGCCCTGGTTGGCGTATCGGAGCCCCTGGAGACGAGGTGGCGGACATCCGACTTCGCCATGTCCACGGCTACAGCGTGGACACACGGGATGGCAGGAAGCGGTGCATACTCTGCGGCAGCAATTGGATAACCGATCCTAATGCGTCGGTTGCCTTGTGCTGAGATGCCCAGAGGACCCATCGATGCCGGACAACCCGTGATGGCGGTGCTCGTGGGCTCCGGCGACTAGAAGGCCGAAGGGAGCACTCCGGTCGTGGTGGGATCGCTGGCGCCCCGGAGCGCTTCCATATTCTGGCCTGCCCTGGGTTTCGTAAACTGGGTTGCTCATGGAGATGGCTGTGCGGCTGGTTGGGAACCTGGAGCGTGTCACGACACGCCGGGAGGTTCTGAAGCTGCGGCTCGCGTGTCGTCTCGGATTTTGGGATGTCGGGTGGTTCTGTGGTTGGTGAGTATGGGATTGTGCCTGGTCAGGCAGC # Right flank : CGCGCTGCCACGCGCGACCTCGCCGACACCAATTTGAGACCTACTCGCTTACCGTGTCCGGATTCGACATAAAAGAAGCCTGTTTCCAGGGCCTTGGCCGCCCCCGCCACTGGGGCGGGGTTGCAACTTGTTCTGTCTGTCTGGCCGTGGCAGCGGTGAGCGCCTGTTCGCCGGAGATGGTGGTGAGTAGCCACCTCCGGCGAACACTGCTCCATTCGGGTGTTCTCAGACGCCTTCGGGGAGCCGGGGATCGGTTTTTGTCGGTGGAGGTCTCTAGCCTCGCGTCGTTCGTCGGGGGACGACGATGTGAAAGGTTTTCGTGGTGTGGGCGCACAGTCCCAGTGGTGTAACCGGTCAGTGGCATGGGCTGGCCGATCATGTCCGTTTGACGGCGCGATTGGCCCGTGTTTTTGCGGAACCGTTTGGTGCGGGGGAGTTGGCGTGGAGCCTGGGGCTTGTCCATGACGCAGGCAAGTGCGCAATCGACTGGCAGGACAAGT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCGCTGGGACTCGCGTCCCAGCGGGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.60,-16.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 92034-91762 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRG01000013.1 Saccharothrix coeruleofusca strain JCM 3313 sequence13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92033 29 100.0 32 ............................. GCGTCGCCGACCGCGCCGACCGCTATGCCGAT 91972 29 100.0 32 ............................. CACCGCACCCACACGATCTACCTCCAGACCGG 91911 29 100.0 32 ............................. ACGAGGTCGACGTCGGCCGGGTCGAGGGTGAG 91850 28 93.1 32 .....................-......G GCCGACAACCAGACCTGGACCGATCGGGAGTC 91790 29 89.7 0 ....................T......TG | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 CTCGACCCCGCGCACGCGGGGGTGTTCCC # Left flank : CCAAATGGGGTCGCCTCGAACGGGTGAATGTCGCCAACCGACGTCAAACGTCACCCAGTGGTGGTGACCGGCCGCGGGATGCGTCAGGTGTTGCGGATCGGCGCCGGTGTGTTGCGGAAGGCGGTCTGACGTCGGGTAAGGGCGGGAACGGGCTCCGGTTGCGCGTAGCGGGCCGTTGGGCGTCCCGATGACATTCCTTCTGCGGTGTCGGTGTCGGTCGCGTCATGGCCGGTTGGTGAGGTCGTTGCGGTGATGATGAGTGGTCCTGTGGGGTTGCCGGATGGCGTGTGATGTCGTGAAGGGGACGGTGGTTGCCGGGGTGGTCGGTTCGGAGTCGGTGGTCGTGCTCGGGTATGAGGGGGTCAGGTTGGTGACGTTGGATGGGGTGTCGGACTAGTGGGCGGGGGTGTGTGGATGTGTGATCGGGTTGGCTGGCGGGTGCGGAAACGGAGTGAATGAGAAACGCTGTTCTGGTTCATAGAGTTCCTGGTCATCAAGCC # Right flank : TTCGGCGGCCCCGGCCACCATCCTGACCAACCAGGCCAGGTCAACTCGAAGAAGCAGTTCGTGGAATCGCAGGATTTCCAGGTGGCGGTCACTGAGGCGGTCATCGACAACCGGGAGGCCCACAACACCATGGCCGACTACTTCTTCAGCGACGGACCTGGCATCGGCGCTGTCATCATGGTCCTCGCGGATGCCTTCTACGAGGTCGTGATCGATCAGCAAGTGGAGGCTCGACTCTGCGCTTTCAGTCAGAAGGGGGTCCACTGCCAGGGGCGCTTTATGTCGCCTTGTAGACAGGCCAGGCGGTGGTTGGCTTCGTTCGCCGCGTGGGGGTCGGTGTTGGCTTTGCCGAGGATGAAGGCGGTCCAGCGGAGTTCTGTGGTGGTGGCCAGTGTGCGGTAGCCGGGCCAGGTGGTCACGTCGTAGCCGCCGTAGGCGTTGACGAACGCGTCGTACTGCGCGGGGGTGATGCGGGCGAAGTCGGTGTGGTCGACGGCCAG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGACCCCGCGCACGCGGGGGTGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3123-2791 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMRG01000009.1 Saccharothrix coeruleofusca strain JCM 3313 sequence09, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3122 29 96.6 32 ............................T GGCTGTCCCTGCGCACAACTACTTTCCGTTCA 3061 29 100.0 32 ............................. GCCTCGGGCAGTTGAACGCCATACCCCGCACG 3000 29 96.6 31 ..................A.......... GGGTCCAGGCCCACCGCACGTCGTAGCCGCA 2940 28 93.1 32 .......T-.................... GTACTCGCGCACCTCCTGCGGGTCGTCGTCGA 2880 29 96.6 32 .....................A....... GACCTGGCCACCCCGGCGGACCGGCCCGGCTG 2819 29 86.2 0 .C...................A..A...G | ========== ====== ====== ====== ============================= ================================ ================== 6 29 94.9 32 GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Left flank : GCACCACCTGGCACCCCTGGCCACCGAAACCGCGCACCACCGCCACAACAGCGACGTCAACGACCTCGCCCACGAAGTCCACCTGCTCCGATCAACCGCCGCTTGATCGGATACCGCGCGGGCCACAGTCCCAGCCGCCCACGTCACGACGCATCTCGCCGTCGCCCGGTGGCGCTGTTGTCGAGGCTGGACATCGCCTGCAGTCCGATCAAGCTTTCCGCTTCCCGATGACGTCCCTCGTGGTCAGCGATGAACCGACATATGGGTCCGGCCACGCCCTCAAGTACCTGATCGCGCTCACCGGATAGCCGGATGATCAACTACTTCAGGTCAAGCCGAGCCCGTCAAATCGCCGTGTCCGCTGAGCAGTTGGAGCCAGCCGCCGCAGGTACCCCGGTGAGTGCCCGCAGACCGGCCCCCTGTCCTGACCACTCAGTGCCAGCCCGCACAAACCGATGCTAAAACAGCGGAACGCCGTGTAAAGTGCCTGGTCAGAAAGT # Right flank : GTGGCCCGAGGATCACGCTTGGTTCGTGACCGCCGAACTCGACACCCCTTGCACCTACCTCGGCTGCGACCGCGCCGTCGCCGACGCCCTGGCTGCCACCGAGCCGGAGACCTTCGAAGTGGCCCCTACGACCCGACATCGACCTGACCATCCGACACCGGGGTCTCGGTCTGCGCGGACCCCACCCATCCGGTGGCAGGACTACAGCCCGTCCTGAGCGAGCACAACGCAGAAGCGCAAACACGCGCCAATGCGGTGACGGTAGTAGCCAAGCCGTACCCGAGAAGGTGCGGTCAGCGCTGCTCAGTGGATGCGGCGGGCGGGTCGGGATGCGGTACCGCGTGGCTGGCGAACCGGGTCCGCGTCGCGGTCACCCGTGACAGCGCGGGCGAGCCGATCCCGGTCAGGTGGCGGGGCGAGGAGATGTCCAGCGTCGCGAGGACGGCTACGGCCAACAGGGAGAAGCGCGCCATCCAGCGGATGCGTCGTTCCGGTCTGCT # Questionable array : NO Score: 3.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGCGAGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //