Array 1 1060-238 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKG01000116.1 Escherichia coli strain HH-NP031 sequence116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1059 29 100.0 32 ............................. AAATAGCGTTTGTTGTTGGAATAATGGGTTAT 998 29 100.0 32 ............................. ATTTTTCAAAACAGATCGCTACTGCTCGTGCA 937 29 100.0 32 ............................. GAACTCAGGCTTCAGGGCATCAGCACAATGGA 876 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 815 29 100.0 32 ............................. ACTGGTTCTGTAACCCAAATTTGGGATCATTC 754 29 100.0 32 ............................. ACGAAACGCAGTACGGTTTTGTCAGTTAACAC 693 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 632 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 571 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 510 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 449 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 388 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 327 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 266 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTTATATTGAATTAATGCCTGTTAATTTTTTCTTTAGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 49574-48324 **** Predicted by CRISPRDetect 2.4 *** >NZ_BFKG01000161.1 Escherichia coli strain HH-NP031 sequence161, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 49573 29 100.0 32 ............................. AATCACTACGCTGTAATTTATTGTAGGCGACA 49512 29 96.6 32 ............................T TTCTACCCTGTTCGGCTACCAGCAGCGACTGC 49451 29 100.0 32 ............................. GCCACGATCGGCGATCTGGTTTACGCGTTGCT 49390 29 100.0 33 ............................. TTTTTGCACCAGAACGGATCGCGGTTTGCACGC 49328 29 100.0 32 ............................. AAATTTGCCGGTAATCGGGTGCTTGTATCGCC 49267 29 100.0 32 ............................. ATCAGACCGTTTTTGAAGTGGGCAGGCGGAAA 49206 29 100.0 32 ............................. TCTTTCGTCAATTTTGGCGCTATAAACTTCAT 49145 29 100.0 32 ............................. CGCCCATCAGCACCGCGCAGGATCAGGAAACC 49084 29 100.0 32 ............................. CGGCCCGCGCGGCCGCAATTGAGGCCGGTTTG 49023 29 100.0 32 ............................. CCACACACATCGAGCTGGTGGGGATTAATGCT 48962 29 100.0 32 ............................. ACCGCCTATTACAACGAAATCGATCCATTCGT 48901 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 48840 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 48779 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 48718 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 48657 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 48596 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 48535 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 48474 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 48413 29 96.6 32 ....................A........ CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 48352 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //