Array 1 4989-5681 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NULS01000052.1 Bacillus thuringiensis strain AFS040987 AFS040987_120_E11_Contig52_140618, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
      4989	    32	 100.0	    35	................................	GTAAAGGATTGTAAGAGGACAGTTACGGACATAAA 	
      5056	    32	 100.0	    33	................................	ACTTACTTTAGCGCAACTAGAGCATATTCATTT   	
      5121	    31	  93.8	    34	.........C.......-..............	CCGCACCCTGCGAAACAATAACAGTTGTTGTCTG  	
      5186	    32	  90.6	    34	.........C.A........T...........	ATCATGTCAAAGGCCATTTGCACTCATTGAGGTA  	
      5252	    32	  93.8	    33	.........C.....................C	CATTGGTTTATCAGGAGTCATTGGCTTATCTTT   	
      5317	    31	  90.6	    36	T........-.........T............	ATCATTTGAGTGCGATCTATTTCAACAGCATTTAAA	
      5384	    32	  96.9	    34	.......T........................	ATTTGGTAGCGCATTGTATATGGATGCACGATTT  	
      5450	    32	  93.8	    36	.......T.......A................	ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA	
      5518	    32	  96.9	    35	.........C......................	TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 	
      5585	    32	  90.6	    33	T..........AG...................	GGATCAGTAAACGGCAATGAAAAACCCGCCGTC   	
      5650	    32	  93.8	     0	.....................CA.........	|                                   	
==========	======	======	======	================================	====================================	==================
        11	    32	  94.6	    34	GTCGCACCTTATATAGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG
# Right flank :  TTAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACCGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCC

# Questionable array : NO	 Score: 8.31
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCTTATATAGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         F Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:56.25%AT]
# 	Reference repeat match prediction:         F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-3.10,-2.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [5-9] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [73.3-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [10.05,0   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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