Array 1 388673-387608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHII010000004.1 Roseospira marina strain DSM 15113 Ga0415281_04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 388672 36 100.0 39 .................................... ATGAGGACTGGCCGATAGAGCCGGCCCGTTGGTCGCTGG 388597 36 100.0 36 .................................... GGCGATCTCTTCGGCCGAAACCCCGCCCTCTGCGCC 388525 36 100.0 37 .................................... TGCGCGCGGTGGCACAGGAGAGCGGGCTCACCGTGTT 388452 36 100.0 37 .................................... AAGGGGAACACCATATTGCAGTCCCAGAGAAACGGAG 388379 36 100.0 40 .................................... CCCGGCCGGGTCGGCTTCGTCCGTCCAGTCCAGCCACATC 388303 36 100.0 37 .................................... CAGGCTGGGCGCCATCTGTGGTCACGGCCGCGAATGC 388230 36 100.0 38 .................................... GCGGCCGTGCAGGCTGCCGCGTCGAGCAACGACAACGC 388156 36 100.0 38 .................................... AGGCTTTCACAGCCGGTGACCACCAGACACAAAAAAAC 388082 36 100.0 40 .................................... GTGAACACGATCTTGGCCTGGTCCTTGTCGGCGGCCAGCG 388006 36 100.0 36 .................................... GATCCGGTCGGGCGTGACCACGGTCTCGGCCGTGCC 387934 36 100.0 35 .................................... ATTCTGACACCCCCGCTATTCTGCCCGCGATGAGA 387863 36 100.0 38 .................................... CAGCGGGGAAATATGCACCTCGTCCCGATCGTCGTGTG 387789 36 100.0 37 .................................... TAAAACCGGTAAACTTCGTTGGTACCGTATTCGACGC 387716 36 100.0 38 .................................... ACAACAATGCGGGCGGATGTGGTTAGGCGTTTGATGAC 387642 35 88.9 0 .......C......................C-.G.. | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 99.3 38 CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Left flank : TCACCTACGACATCGCCGACCCGAAGCGCTGGCGTCGGGTGTGGAAGGTCATGAACGGCTACGGCGAATGGCTGCAACTGTCCGTATTCCAGTGCCGCCTGTCGCGCAAACGTCTCGTCCAATTGCGCGGGGCGCTGACCGAGGCCATCCACGACGGCGCCGACCATGTGCTCATCCTTGATCTGGGCCCGGCCGAGACCGTGAAGCCCCGCCTGGAAAGCCTGGGAAAGACCGTGGCGGTGGTGGAACGCACACCGATCATCGTGTAACCTTCACTCGGATTGCTGTGAGGCGCGAGCCGCCCGGCCGCTGCGAGCGCTCCTGTGGCGCTCGCGACTCGGGGAGCGCTCGCAAACGCTTTTTGACATTGTAAAACAAAGCGGTAGCAGGTGCGCGGCGCAGTTCCTGAGCACCGTGGGAGCCGTATCGACTCGGGGCTCTGGCGAGCGCTCGAAAACGGTGGTAAAATCCCAACTAGAGCCGCCGGTTACAGCCGAGCT # Right flank : TGGCAGCATCGCCTGCCGCGCCGTTGGCCTGATGATACGTCTGGGACGAGATCAGCAAACGCATGTTTCGGGGATCTGTCGGCGGCCGAGTGACCCAGCGCGCGCCCACATGCGCGGCGAGGTGCAGTCGGGTTGGCGCATTTTTGTTTGGCGCCCCTGCGTACACCGCGCTTACACAGCCCTTCTTACTGGCTCATGTAAGCAAAAACGGCCCCCTTTCGGGAGCCGTTTTCGAAAGCCTTATCAGGCCTTAAAACTGGAGCGGGCGATGAGATTCGAACTCACGACCCCAACCTTGGCAAGGTTGTGCTCTACCCCTGAGCTACGCCCGCATCCGTTCCTGTGTTGGCCCCTTAATTACCCTGCGGAAGGTCCGCGTTTCAAGAGGTTTTTCAAGAGCTTTTCACAGGGTCGACGAGGCTGGGTGGCGGCGCCGTGGAGCGCCGTGCCCCGTCGAGGAGCGCGACTATACTCAGCGCTCGCGGCATTGCAACACCGAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGGGGCAGTAATGCCCCGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 11280-10449 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHII010000003.1 Roseospira marina strain DSM 15113 Ga0415281_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 11279 32 100.0 34 ................................ GTGGGTCCGAACACGCCGACCTGGAAATCCGCCG 11213 32 100.0 33 ................................ CCGGCGCACGTCAGCCCGGTCTGCCTCGACATC 11148 32 100.0 34 ................................ GCTTCCTTGGACTTCAGCGGGGACAAAATCAGAG 11082 32 100.0 33 ................................ CAGGCCGTGCCGATCACGCCCACCTTGAGCGGT 11017 32 100.0 34 ................................ TGAAATTGAGGCACAGCAGGCTGGGTCGTTTGAC 10951 32 100.0 38 ................................ ACGGGGCGCTGGACTGCTGGACTACCGCCAACGCCCCG 10881 32 100.0 34 ................................ ACGGGTGCAGCCGGGGCAATGGCGGCGAATGGGG 10815 32 100.0 34 ................................ GGGGCGGACTCGGGCGATCTCATCGAGGTCGCCG 10749 32 100.0 34 ................................ TTTTGTCGTGTCATCAATTCCAGAGGACGCCCCT 10683 32 100.0 39 ................................ ATGAGCTTGCGCGACCATTTCGCGGGGCGGGCACTGACC 10612 32 100.0 34 ................................ GCCCAATGGCAAGCCGGACGGGATCAAGATCATC 10546 32 100.0 34 ................................ TCATAGGTGAGTGTTGGCGGCCGCCACGCAGCGG 10480 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 13 32 100.0 35 GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Left flank : TCGTCACGTATGACGTCGCGGTTTCGTCGCCCGGCGGCGCGAAAAGGCTGCGCCATGTGGCGCGCGCCTGCCAGGACTTTGGCCAGCGCGTGCAGTTGTCGGTGTTCGAAATCGAGGTCACACCGGCGCAATGGACCGCCTTGAAGGCGCGCCTGGAAGATGTCATCGACCCAGCCCAGGACAGCCTGCGTTACTACAACCTGGGCGCCAATTGGCAGCGCAGGGTCGAACACGTGGGGGCCAAACCCGCCCTGGATCTGAACGGACCACTAATCGTGTGACAGCACGGGAAGCGGTGGGGGGGGGCATCCGGAAAGAGGGGGCGCGAACCGCGAGCACCCCGGCAATCCCAGGCAGGTTCGCACCGGCCCTATACCCCTGAAAACATGGCGAATTCGTGCTGCACCGACAACCGTCGGGTCACAAACTGGGCTGTGAGGGGCAAGGTCCGCGCCACCGTCCCGGTTTTCCGTTCGTGTTCAGCACACTACACTGGTGGA # Right flank : ATGCGGGTCGCGCAGGAGAGCAGTTCGGCCGGGATGGTCAGGCAGGCGCGGGGCGCCCCCCCCTCACCCTGTTCCAGCGCATAATCACCGTCAGGAAGTGCACGCTGAAAATCGTGCGGGGGGTTGCAGGAGCTGGATATCGGGCGGATATGCGGCTGCCGACCACGACGCCCTTACGGGCCAGACACCACCACCTCAACCTTTTATGGTTTTAAGCTTGTTTAATTTTGCAGGAAATTTTAGGTTTATACGTGAATACACTTTTCGCGCGAGCGCCGTTGGCAGGCGCAGCCGACTGGCCTATGCCGGTTCTAACTTACTGATGGGGTCCGACGATGCGTTTTTTTCGATTAGTCCTCGCCGTGTCTTTTTTATTTGGTTTTTCAAATACAGGGCACGCTCAAAATTGCAACTCAGGCGCCTCTAATTATTACTCTGAATATAACTTTGGAGAAACACTCAGCGCACTTAGAAATGGCTGCACGAACACGCTTGGTCCG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCGTGCGGGGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGGGCGTGGATAGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4304-2620 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHII010000037.1 Roseospira marina strain DSM 15113 Ga0415281_37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 4303 37 75.7 38 ..GCGCGG...........A..C.............T GCCGTGCGCGACCTGAAGACCGGGAAGAAGGGCAACTA 4228 37 91.9 38 ...................A.G...A........... CACCTCGAGGTCCAAATGCCCGTCTTGATCGGCCCCCA 4153 37 89.2 36 ..............A....A..C.............A AGGCGGACCTGCATGCGGTCGCGGCCGAATGAGCAC 4080 37 97.3 37 ....................................T CGGTGGTCTCGACCGCGCCGGCGTAGCGGTCAGCGAA 4006 37 100.0 38 ..................................... AAGATGCCACCCTTTCCTTTGCAGCAAAGGGCGCTGGA 3931 37 100.0 37 ..................................... GCCAGACTGGCTACGGCCATGACGAAGCCATCACGTC 3857 37 100.0 38 ..................................... AGGCTGGCGAGCCGATTTTGTTCCAGCACCACCAAGGC 3782 37 100.0 38 ..................................... ATGAAGACGGTGCTGACATCAGGACTGACATCATGGAT 3707 37 100.0 38 ..................................... GAGCCGCAGACGACCGCGGCCGTTCGTCCGGACAAGCG 3632 37 100.0 39 ..................................... TCGGCGCCGTCCCCTCCGAAGAAGACCGCCCCTTCTGTC 3556 37 100.0 38 ..................................... GCCGTGACGCGAAAGAACCCGTTGGCGCCGCTGGCGCC 3481 37 100.0 43 ..................................... CCGCACAGGGGGCGACGGCGGACACAGCCATACAGCCTAACGA 3401 37 100.0 37 ..................................... GGTATGATGACTGGTATCTTATGGCTCTGGACGAATT 3327 37 100.0 37 ..................................... TCGGAGAGATCAGCGCGGACCAGGCCGCGACGGACAT 3253 37 100.0 38 ..................................... GCGCAGTGCGCAAGCCATGATCCTCGGCCCAATCCACC 3178 37 100.0 35 ..................................... GCTGCCACGAACACCGGGGACTTGAGCGCTGCCAC 3106 37 100.0 39 ..................................... CGTAACTCGCGTTGGAAGCAAAATACGTCTTGCTCAGCC 3030 37 100.0 36 ..................................... GAATGACACTGCCAACACCGCTTTCATCAAGACAGT 2957 37 100.0 38 ..................................... TCAGCAGCACGTCCGCATGGCACGGCTGATCCAGCGGG 2882 37 100.0 38 ..................................... GATGTGAGGGCGGATCGGGCTCATGTGGCGACGTCTGC 2807 37 97.3 39 ....................................C ATATACGTCAACAATTCGTCATCTACTTGTTCTTCTCCA 2731 37 100.0 38 ..................................... TTTCGTCGTGCTTGCCCTTGTGGGCTGGCACGTCGAGG 2656 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =========================================== ================== 23 37 97.9 38 GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Left flank : CGCGCGACCCGAGGGCCGTAGGGCCGACGGTGATCGCGCGTCAACAAAGACGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCCCGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCGAGCGAATCAAAAAACTGTGGAAGTCGCACGCGTTTTCTTTGGCGCGCAACACCCTTCGGCGGGACACGCCCGCCTCGGGTTGCGCGCAGCCGGTCGACCCAAGCGCCGTAGGCGCGAAGGTTGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCGAGCGAATCAAAAAACTTCGAAAGTCGCCCGCGTTTTCTTTTGCGCGCAACAACCTTCGGCGGGACGCGCCCGCCTCGGGTT # Right flank : GGCCCGGCTGTAACCGGCAGCTCTGATTGAGATTTTAGCACCGTTTTCGAGCGCTCGCCAGAGCACCGAGTCGATACGGCTTCCACGATGCTCAGGGGCTGTGCCGCGCACGCGCTACCGCTTTGTTTTACAATGTCAAAAAGCGTTTTCGAGCGCTCCCCGAGTCGCGAGCGCCTCAAGAGAGCTCGAAAAAGCCGGGCAGCCCGCTCCAAACCGGACTTCGGGTGAAGGCTACACGATGATCGGCGTGCGTTCCACCACCGCCACGGTCTTACCCAGGCTTTCCAGGCGGGGCTTCACGGTCTCGGCTGGTCCCAGGTCGAGGATGAGCACATGGTCGGCGCCGTCATGGATGGCCTCGGTCAGGGCCCCGCGCACCTGGACGAGACGTTTCCGCGACAAGCGGCATTGAAAGACGGACAGTTGCAGCCATTCGCCGTAGCCGTTCATCACCTTCCATACCCGACGCCAGCGCTTCGGGTCATGGCCGGTCCCCTTGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCGGGGCGTTACTGCCCCGGAAAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.60,-16.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //