Array 1 16878-16727 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDV01000508.1 Streptomyces acidiscabies strain FL01 FL_contig000550.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 16877 29 100.0 32 ............................. GAAAAAAGCCAGGTCGGAAACCATTCCGCCGT 16816 29 100.0 32 ............................. CCGGGCGTGTGCGTGACCTGGACCGTCCGCTC 16755 29 82.8 0 .....................G...GGAG | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGGTCCCCGCGCACGCGGGGATGTTCCC # Left flank : AAGGTGGAACGGCATCGTCTCGTACGTAGTCATGCCCCCACTTTGCCCCACGGATCATCACGAACTGCAGCTGGAGTACTGGCCTCGATTCTTCGGTGGGTTTGGTCGTTGAGTGGCCCGGCGGTTCGCCCGTAATTTCCCTCGCCGTGTGAGGGTGGGCCGTCGCGTGTCACTGCGGAGTGCGCCGGGTTCCACGGGCCCGGAGGAGCGTCTCTGCTGCCGGGGATGTTCGCGCCGGGCTACCAGAGATCGCGTCGAGGACACTCCACCTTCGGCAATCACCCTACGGAGCGGACGGGGCTGGCGCGGGTTGTCGGGTTGAGGTGGGGGCTCGGCGTGGATGTGGGGTGGGGCGCTGAGGGGTTCGACGGAGGTGGGTGGGTAGGGATGGCGGGGATACGGTTTGGGCCGGGGGTTCGGGGAGGGGCGACGAAATGTCCGGTTCCCGGGAAGCGATGAGAAACGGTGGCTCGCCTGGGTAAAGGGCCAGGTCATGGACT # Right flank : AGATTTCCCTGTTGGCCTGGAGCGTCCAATGCGGTCAGCGAAATTGAGGGAGGCGGCTGTCACGGTGATCGTGATGCGGTCTGTGGACGGTTAGGGCGAGGTTCAGTGGGCGGCATGCGGAGTCTTTAGGGAGACCCGATAATCAGGCCGACGTCGAATTCGCGGAATTAGCCTGTTCTGACCTCAAAGGGGAGACGTGAATCGAGCCACCAGCACCTTGCTGTCCTTCTCTGCCGCGCTGATCAGTATCGGGGTGACCGTCGCTCCGGCCAGTGCAGCCGATTCCTCGCGTATCGGTCCCGTGCATGTGTCCAGGGGCAGCGGCGAGGAGATCATCCTGTTCGACAAAGGTTCTGAGTTCAGGTCGGAATCCGGATCAGCCAGCGGTGAAGTCGGCTTCCGCGGTGGATCGTTCACATGGGTCGCCGATTTTCAGATCGGGTTCGAGTCCCGCCACTACACCGCAGTCGACGCAGGCACCCACCGGATTCAGATCAACG # Questionable array : NO Score: 5.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGATGTTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGTTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 553-704 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDV01000066.1 Streptomyces acidiscabies strain FL01 FL_contig000075.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 553 29 100.0 32 ............................. AGGTCCAGCTGCCACCCGCCGTTCATCCGGGC 614 29 100.0 32 ............................. GAGCCGGCGACCTACACCCCGCCGCCGTTCCC 675 29 93.1 0 ..........................AT. | A [699] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : GGTGTTGGCCAGTGGGGTAGATCGAGCCGTGCGCTGCTGTCTTCGTAAGCGACGGGCTGCGCCGCACCCCCGGCACCCCGCTTCCCGCCGTACGCGACTCACCCGCCATGCCGGTGCGGCGGGGCGAGCCCGCCGATTGCGGCTCTCCCGCCGTACAGGTCAGGCGGGGACGGGCTCTCCGTTCGCGACTCTCCCGCCGTGCGGGGGGGCGCCGATACGGGGATGGCATCCGCACGAAAGTGGCCACCGAGGGTCGTGCGGCACGCGGGGTCAGGGGGGCGGCACCGTGTCGGAACACGACTCTGGGGACGTACGGTTCGGTACGCGTTGGGGGCGTCTCGGGGTTGAGGTTGTTCGATATCGCGTCCGCGCGGGGTTCTGGCGATGCACTATGAGGGGCGATGGCATCTTCAGGGAGGGACAGCGAGGGAGAAATATCCGTTTCTCTGGAAGTAACGGATTCCGGGCTGACGGCGGAGTAAAGCACCAGGTCGGGGTCT # Right flank : CCGCCTCGCTTCCAGTTGTCCGAGGTCCGGTTGGCGGAGGAGTTCGGGGTGAACCGGGACACCGTGCGGAACGCGACGCGGTCGTTGCGGGAGAAGGGGTGGATCACGACGACTCCGGCGTTGGGGTCGTTCGTGGCGGATGAGCGGCCGAGGGGCTGAGCTTGGGGTGGGTTGCCCCGTCCGTATGCCGTGGGGGCGGCGTACGGACGGGGCGGGGAGGGCACGGTGAGCTGCTGTCCGCCGTGCCGTGGATTCAGGGAGGCGGCGGGCCGTTCGAGGCGATCCCCCAGACCAGCGCCGACGCCATCGACAGCAGGACCGTGACGTAGGCGATCGTGCGCCAGCGGTCGTTCACGGGGTCGCCCTCGGGATCAGCTCCTCGTAGTGCTCGCACAGGGCGTTCAGGGAGTGGGCCAGGCGCAGGGCCCTGCGGTACTCGCCCTGCGGGTGCGGACCGGTGCCGAGCTTCTGGCGGGCCTCACCGATACAGGCCAGGCAGC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12731-14774 **** Predicted by CRISPRDetect 2.4 *** >NZ_LYDV01000679.1 Streptomyces acidiscabies strain FL01 FL_contig000734.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================== ================== 12731 37 100.0 36 ..................................... CGGTGATGTACGACGCCTCGCACTTGCCGTACGACG 12804 37 100.0 36 ..................................... GGCTGCACCTCGGTCGGCGTGAACGCGGGCCAGCTC 12877 37 100.0 36 ..................................... AGCCCGTACTTGCGGATGTACGGCTTGTGGATCTCG 12950 37 100.0 37 ..................................... CCGTTGCCGGCCCACTGGTACGGCAGGCCGTTCTGGG 13024 37 100.0 35 ..................................... CCCCTCGCTCAGCACGTTAGACCCTAGGGTCTATG 13096 37 100.0 35 ..................................... GCGCTTGGGGTCGGTCGCGTGCCGCTCGTACTCGG 13168 37 100.0 36 ..................................... CCCAACCCCCCCACGTACGACCTCTACCCGAAGGAC 13241 37 100.0 35 ..................................... GGCAGACAGGGTGGTCACCCCAACTACCGCGCTGA 13313 37 100.0 37 ..................................... CGTACCGGGCGGGTGGCGTGGGGACCGAGGCCCGGCA 13387 37 100.0 36 ..................................... TACAACCAGGTCGTGGTCGAGACGGTGTGCGCGCGT 13460 37 100.0 36 ..................................... CGGTCCAGGTCGGTGTGTGCCGCTGGGGTGCGGCGG 13533 37 100.0 38 ..................................... CACAGCGACCGCAGCCCGTACCTGGCGCACTCGCGCTC 13608 37 100.0 35 ..................................... ATCTGTCTGTGCCGGCGCTCCGCCAGTACGACGTG 13680 37 100.0 37 ..................................... CACCGTGCGCCGCAGCCAGGCGAACCACGCCTCGGCG 13754 37 100.0 38 ..................................... ATGTCGGTCGGGGCGGCAGCCGACTTCCGGACGCCGGT 13829 37 100.0 37 ..................................... CTGCGCTGACCTGCACCGGAGCCCCGGTGTCAGAGAC 13903 37 100.0 36 ..................................... GACGCCGCCAGCGAGCGCCGTCCGCTGGTCGTCTAC 13976 37 100.0 38 ..................................... ACGGCCATCGGTAGCCTCCGCGTCGAGTACGGACCCGA 14051 37 97.3 36 ........T............................ AAAGCGGCCTGCGCGCGGGCGGGGTTGACGCTGACG C [14074] 14125 37 97.3 36 ...............T..................... GTCGCCGGGCCGTACGGCAGTCAGCGCGGCCCGGCG 14198 37 100.0 35 ..................................... GGGATGAGCGTGCGCGGCCAGTCCCTCCTCACCGT 14270 37 91.9 37 ...T............A...C................ ACCGGCACGATCGCTCACACCTTCTTGCCCCAGGGGT 14344 37 94.6 35 ........T.....T...................... GAGATGACCTACGAGGAGTGGATCGCTACCCAGGT 14416 36 89.2 36 ........T....-....A.C................ ATCCCCAGGAAGTTGCTGACCGTCGTGTACCGGACC 14488 37 91.9 66 ......C......C......C................ AACCGGAGCGTTGAACGGTTCTTCGGCAACGCCGCGTGGGCGGACCACTTGGGAGCCGAACGCCTG CC [14498] 14593 37 86.5 35 .....A....T...T.....C.....G.......... GCCGTCAACCGGACCGTGGCGACGGTGACCGGGAT 14665 37 86.5 36 ........T.T.....A..AC................ AGCGCGGTCCAGGCTACCGAGGCACAGCACGACCTG 14738 37 86.5 0 ..C.......T.T.......C.C.............. | ========== ====== ====== ====== ===================================== ================================================================== ================== 28 37 97.2 37 GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Left flank : TCCTCCGCCACGGCGCTCCACCGCACGAAGCCCGTCCTGCCACGCACACGAGCCTTTTCCCACGTCATGGACCAAGGCCAGGTACTCGGCCAACTCCCCTACCCCGAACACCTCCCCGAACTTCCGAGCCAGAGCCGCTGAACCCCGCAGATGCGCTTCCAGCGAATGCTGCTGCCCCGACACGTCGCTACGGCTGTGCGCGATCAGCACACCCCCGGACCCACCCACAACAGTCCCTCCCGGAAGACGCAGGCCCTTTCGCCGAGCCTTGGTGGGCCGAAACGTACACACCCTCACTGACAACGCCCGCGAAGAAGCCCTCAGTTCCGGTTAGGCTCCTCACCTCGCCGTCGAATCACCGAACGCCATGCTTCGGAACCTCTAGTGCACACGCGACACGCGGAACGCACCTAAGGAAAATGTCCACTTTGTTGGTGTCTGCTTCGCCCTGGACTTGTTCCCACCTCCACTCGATACGATGAATGTGCTGGTCAGCCAGC # Right flank : CAATTTGGAACTGTGCGCCAACTTGTCCGGCGGTCACATGCCACAGTCGGCCTCTGAGCGATCGATCCACTGACGATGGGAAATAAGCGGCACCGGCGGCATATTCGTTGTCCGGAGGTGAGTGTCAGGCGGATTGTTTCTGCTCTTTTGAGGTTCTTGGTAGTGGCGATCGCCGCATATTTGCTGGTGATGTCGTGTTGCCCTGCGGGGTGGAGCGTTTGGCTAGATGCGTGCGCGGAGACGTGGTAGGTGCCGTGTTGGGGAACTGTCTCCCGTTGGGATGAGCGGAGCTGGCAGCAGGATTTCGAACCACGTCGTCTTTCCCGGCGGGTTCGTCTGAGTTCCCCAGATGTCGGCAAGTGCCTCTACGAGGAGGAGGCCACGGCCCCCTTCGTCGTCCGGCCCTGCTTCAGTGACGGTCGGCAACAAGGAGATCATGTCGGTGACTTCGACACGGAGACTCTTGCGAGTGCGTGTCACGGCGATGCCGCACGGGGCGC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGTGACCGAGGATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-17.10,-11.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-32] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //