Array 1 343-1332 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIF010000026.1 Pseudomonas aeruginosa strain PA225 NODE_26_length_49323_cov_28.997256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 343 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 403 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 463 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 523 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 583 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 643 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 704 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 765 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 825 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 885 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 945 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 1005 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 1065 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 1125 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 1185 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 1245 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 1305 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCCGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACATTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 11083-9858 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIF010000026.1 Pseudomonas aeruginosa strain PA225 NODE_26_length_49323_cov_28.997256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11082 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 11022 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 10962 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 10902 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 10842 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 10782 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 10721 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 10661 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 10601 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCGCTGGCGG 10541 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 10481 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 10421 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 10361 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 10305 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 10245 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 10185 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 10125 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 10065 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 10005 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 9945 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 9885 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 424568-424180 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWIF010000008.1 Pseudomonas aeruginosa strain PA225 NODE_8_length_424911_cov_31.114319, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 424567 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 424507 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 424447 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 424387 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 424327 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 424267 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 424207 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //