Array 1 24364-23273 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCB01000019.1 Levilactobacillus brevis strain TUCO-5E scaffold19.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 24363 36 100.0 30 .................................... CTTATCATTCGTTTGGGTTGAAGAAGCCTA 24297 36 100.0 30 .................................... AATTCAAACGATTAAACGCTGGTTGAGTGG 24231 36 100.0 29 .................................... TTTCTTACTAGATATGATTGATGATGTAG 24166 36 100.0 30 .................................... TGTTGCCGTCGTGCATGACTAGCGACTTGA 24100 36 100.0 30 .................................... AGAGTGATTACCCACAAGTGCAGCATACAT 24034 36 100.0 30 .................................... TTTTAGACAACAAAAAAACTCACGTGAGCT 23968 36 100.0 30 .................................... TGATCTGTTAGGAAAATCAACCGTTAAAGT 23902 36 100.0 30 .................................... ACCAGCTTAAATTGGAACAGTCTACCGGCA 23836 36 100.0 30 .................................... TTTAGGTTGTGTAGGTTTGGGTTGTGACTT 23770 36 100.0 30 .................................... TTTCAGGTAAGGTTACCAAGGCAACGCCTA 23704 36 100.0 30 .................................... GGCAACGGATACTACAGAAGACAGCAGAAC 23638 36 100.0 30 .................................... ACAGGAGAACCAACTAAGCTTATGCCGTGG 23572 36 100.0 30 .................................... TCAGCTAACAAGGACTACGTAAAGTTGGTC 23506 36 100.0 30 .................................... CGGCCTTACCGTAGATTGTACTGCCCTTGG 23440 36 100.0 30 .................................... TTTTTCTTCGGAACTTGCCAATAGACTTCG 23374 36 100.0 30 .................................... TGGTACAATGGCTTCCAGCTTATTGCCTTC 23308 36 88.9 0 .A.........................A.C.....T | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 99.3 30 GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Left flank : AAACGTGGATTTAAATGCGTTATTTCAACGAAAATTGCAAACGAGGTTGTTGAAAGTCTTAGCTGATGATCAAACGGTGGGCTTAGTGGATGGGCTGCAATCATTGCTATCTCAACTATTAGCGGATAGTTACTTGATGGATGTTCCATTGGAGTTGCCAGAGACACCAGAACTAGCAAAGCTGATAAAATTTAGTGGTATTCAACTAGTACCTGATTTAAGAGATGACGTATATGGTATACTAGAGACACTAGTTAAGACGTTGATAGAACTGAATGATCACCGAATGGTGGTTTTGACCAATGTCGGCCATTATCTTCAGGTCAGCCAACTTCAATCGTTGGTAAGATTTATGGCAAATATTGATTTACCAATTCTTCTAATTGAATTTTCATCCACCAAGCAATCAGACTATTTCAGAAATTGTGACTATCACTACATCGACAGCGATTTTGTGTTGTGGTAAATTCTCAAGGTGAGATAATGGTGTGAAAATGTCG # Right flank : ACCCACTAGCAATGCTGCTAGGTGCTATGGTGTCTTACGATTTTGATAAAATGGCTCATTGATAAGAGCGAGATAACTTCTTTGAAGATATTAAATGACCTTGTAAAAAATGGTCTATAGATCTGTCAATTAGCACCAGTGGGCGTAAACATGAGAGTTCAATTCAACTTGCGAATTGAACTCTTTTTGTTAGCAAACGAATTATCACTAGCTTTGACAGCGAGGTACTTCAGTTAACCTAAACAATAACGGCAGTTTAACCACCAGACTATAAAAAATTGGTAACTTAACAAGACGCGGCATAACTTGAGCGCCCGCAACCGCCACTGCTGATAATGCTCGCCTTTTATCTGATCTCACGTATCCTTAAATCTGTATCATCTCAATCCAATCAACCAGCGTTTAGCAGTCCAAGTGAGTTAGCTGGGCCAACAAAGTGAGGGGCCTCACTCATGTTTAGCCAACCACACCGCGTATGATAGAGACGATAGCTAGAATTG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTTAGAATCTTGGTAAATCAATAGGGTTAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-2.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 2127-1976 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCB01000020.1 Levilactobacillus brevis strain TUCO-5E scaffold20.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2126 29 100.0 32 ............................. TAGTAGCCGCTTTGTTAACAGCGCTGAACGCC 2065 29 100.0 32 ............................. ACTTTCTGGCTTGGGTGAAGAAGATGGGATTA 2004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : GGCACAAAAAGAATTGGCAGAGCGCTTGAATTTGACGGCGCAGTCAACTGCGGAATTTGTTCGGAAATTGGAAAAAAAGGGGTTCGTGACACGAATGAAATCTCCTACGGACCAGCGAGTTACCGTGGTGAGTATCACGGATGCTGGACGCAAGGAAACAACGAAAAATGTGCAACAAATCCCGCCATTCTTAACAATTTTAGATGATACGGAGTTGGATCAACTTTCACATATTTTAGATAAGATTAATCAGCATATGTATGAAGAAGTTAATGCCGCTAACCCAACCTGGTTCAACAAGTTCCATCAGGTCATTATGAATCGTATGTTATCGCAATTACATTCAGGTGAAGATCGGTAGGGTCGGTGTCAGTTTCGGCGATATTTCTGAGGGCTGATTTATTTGTTAGACAACCATGAAGACTTGCACTCAGAAGCAAAGTGATGAAAATTGCGGTATTGCTAAAATGAGAATGCCGGTATAATAGGGATTCTTTAGT # Right flank : GGCCGTGCCTACACCCACACGCTTTTCAGCCAGTATTCCCCACGCCTGTGGGGGCATTTCCGCTACGTCCATAAAATAGTATTAGCGGAAGTAGAAAAAACATGATTTTTCTATGTTTAAATTTTAATTTTCGGTAAACATTAAGCACCCTATTCGTATAGCACTAGATATATTGAAAGTAATTACAAAGGTAACGAAAGAAATAATTAGTATGATAAAAACCCCTAGCTTTATTGTTAGGGGTTTTATCAGATAATTTCCACGTCACTATAGTGCATCGGCTGCACTGTTTTATAGATGTGTTAAATTTGACGATTTGCGGCAATCTAGTTCACATTGCACAATCCGATAATAAATTGGATAAATCTCTGCGAGAATTTGATGTTTGATAATATTGACTGGATCAAAGGGGTTTACATTTGTGAGATTGAGTCCGCCAGAATTAGTATCACCGTAATCGACTGTCCAATAATGTTGATCGTCAGCTACGAAATGGTCAA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2396-2896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCB01000022.1 Levilactobacillus brevis strain TUCO-5E scaffold22.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================= ================== 2396 29 100.0 32 ............................. GGTTATCATGAAGCCCTTCACAGATCGGCTGC 2457 29 100.0 32 ............................. GAGAAAAACGTTAACTCAGTCTTTTACCATAA 2518 29 100.0 32 ............................. CACGCCTCGCCATCAGGAATATCATCAATACA 2579 29 96.6 32 ............................C GGCTGTACCTGAACCCCATTAAGCTGTTCGGT 2640 29 100.0 32 ............................. ATCTATTCCAACCTCAACGATTCCAGAAACTT 2701 29 96.6 33 ............................G GCTGCCATCATTTCCTTGTTTCTGACCATTTTG 2763 29 100.0 77 ............................. GTTTGGAGCCTATCAATTTGATTATCCTTTGTTTCCCAATATGTCCTTGTTGGGTACGTCACAAGCAACGATTTTTG 2869 28 72.4 0 .....T....T.CA......TC.-...A. | ========== ====== ====== ====== ============================= ============================================================================= ================== 8 29 95.7 39 GTATTCCCCACAGGTGTGGGGGTGATCCT # Left flank : ACGTATCCGGCTGTATTCCATGATAATGAAGTTGGCGGGTATACCGTAACTTTCCCCGATATTGAAGACGCTACGACCAGCGGCCAAACCCTAGGCGAAAGTCTGGTCAATGCGGCAATCGTTCTCGGTCAGACACTCCATCATCAGCCCACTGCATTACCATCTGCGACGACTATTACTGAATTAATGCATCAATACCCCATGGCATTTATTCAGTTTGTCGCGGTGGATTTAGACCAAATCATCGAATCAGCAGTACCGACTAATCAAGTGGACCTACAATTGATTCAGTGACTGATGAAATAAAATGTTGCGAGCTGGTTCCGATTATGGGGACCGGCTTTTTATTAGGTGTGAGAGTGAGTTGTCGGGTGGTGTGCCGGATTGCCGTTGCCATGTTTCTGCGGTATGCTATAAAATATAATGAGTCCCACAACGAAACTCATAAAAAACGGCGGTTTTGAAATTTTGGAATGCCGGTGTGGCGGCGTTTCTTTAGT # Right flank : TATTACCTCAATAAACCATCTTGGATTAATGGTAAAAGAGTTGTCAAAAATATTGGCAACTCTTTTGCATATATACATGGCCACCGCGAACACACGTTCTTTACATTGCTTATGACTTCCTATATACTGAATTTAAGTCAACTTGAGAGAAGGTTATCGCTAATGAAACAGGCAATATTTGTCATGATGGATCAGTACGCTGACTGGGAAGGGGCTTACCTGTCCAGTCAACTGAACCAACTGACCGACTGGGGAGTAAAGACGGCATCTAATCAGCCGGAGGTTACCTCAATTGGCGGTTGGACAACACGAGTGGACTACCAGATTAGCGAGCTTAAACCTGAGATGACGCTATTGGTACTCATTGGTGGTAACGCTTGGCAACACGATGATCTTAGGTTAACTACCTTAATTCAGCAGTGTCTTCATCGAAAAGTCATTGTCGGATCCATCTGTGGCGCAGTTGATTACTTAGCCCGTAATGGGTTGTTGACGGGCTA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACAGGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13600-13872 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCB01000009.1 Levilactobacillus brevis strain TUCO-5E scaffold9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13600 29 100.0 32 ............................. GATCGATTGATTTTTAAAAAGCGAATTAAATC 13661 29 100.0 32 ............................. GTAATGTTTTCCGACCCCATGGTGTCCCCAGT 13722 29 100.0 32 ............................. TAATATTTATGCTGGCAGCCCGGTCACTTGGT 13783 29 100.0 32 ............................. GAGGTTTGTTAATTTTAAAATAATGAAAATCA 13844 29 89.7 0 ............G.............GA. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 97.9 32 GTATTCCCCACATGTGTGGGGGTGATCCT # Left flank : ACCACAAGCGAAGTCCGGTAACGTTTGTCGGTCATATACTGGCGGACAAGTTCCATTAAGACGACGGACTTACCAGTACCGGCCGCGCCCTGAATGATGGCAACGGCGGATTCTTGGCCATTGAGACTGTCTTTGATGTAATGATTCATGTCGGTAATAACAGCCTTTTGGTCGTCAGACAAATCGTCGACGAAGAACTGTTCCTGTAAAATTTTATTCATCGAATAACTCCTAAATTTAGTGAATTAGCGTCACTGAGACGTTGGAAATAGCACTATTCATTATAGCAGGTTACGGTGATGGCGCTGAATTTTTTAAGGTGGATTGACTGGGGCGGAAAAGTGGAGAATTTTGGAATCTAGTGACTATAGTTGGCCTAAATTATTTAGTCGGTTAAGAGTTTGTGAATTGGGGATAGCTGGAGTATGCTTTAAGAGCAAAGTGATAAAAATAGCCGGATTTACAAAATAGGAATGCCGGTATATCAAGGATTCTTTAGT # Right flank : TTAATGAAAATTAATGATGATGTTTTTATATAAAAGGTATAAGATTAAATAGTACAAGGCGTGTATACGATTACATAAAAAGAATCAAGGTTAGCAATTATAAATCAAATGTTAAATAGGGTATGAAATATTTTGTAAATGTCATTAGTTGATTTAAGCTATTAAATTCGGTTATCTTAGTAATCATAAGGCGAATACCTAGCATTTAAATCTGTTAGAGAAGGGATGGTTATGTATGGAAGTGTCTAAATCCGTAGCGGCTTTGTGGGCTAAGAAAAGCTCAACCGATACGCAACAGTACTGGCTTCCGCTAATTTCCCATCTAATCGATGCGCGAAACACCATTAACTGGTTATTCAATCATTGGCTCAGTGATGGTCAACGGCAATTATTAATGGGAACCTTATCAGAAGAACAAACCCAGCAACTTGTTAAGTTTGTTGGGTTTGTTCATGATCTGGGAAAGGCCACGCCGGCATTTCAGATGAAGCAGTCCTATG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACATGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23486-23941 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMCB01000009.1 Levilactobacillus brevis strain TUCO-5E scaffold9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23486 29 100.0 32 ............................. CTTCCGGAACCAAATCCTTCCAACTTAAGATC 23547 29 100.0 32 ............................. TTATGCCAACTTTCTGCCACACTTAGGGCAAT 23608 29 96.6 32 ............................C TAATCAAGAACTACTTTGCAATGGGGCTTTAC 23669 29 100.0 32 ............................. CACTTGCTGATTCGACCTGCCGTCGGAGGGCG 23730 29 96.6 32 ............................C GCCGTCACTGGTCATCATCTCCTAAATTGGTT 23791 29 100.0 32 ............................. CGTAAAGGGCGTAAAGAGGCCGACACGGTGCA 23852 29 96.6 32 ............................C TAAAATCCGATCATTTTCGGCCATCAATCACA 23913 29 89.7 0 .......................A..GG. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTATTCCCCACGTGTGTGGGGGTGATCCT # Left flank : GTAAAGGATGACATCATTTCAATTGGTGCGGTCAAACGGGTACCGGGACAACCAGAGGATTTCTTTGATAGTTTAATCAAGGCTGAGCGAGCTATACCGGAGAATATTACAACTTTGACCGGACTTACGGCGGAAATGTTGGTGACACAGGGGATTAGTTTATCGGCAGGACTACAAGAGTTACGTGAATTTGTTGGTTCCTTACCGATTGTTGGCTATAATCTGCGATTTGACGAAATGTTTCTAACAAGCGGTTTTAGAACAATTAATCAGCCAGAATTAACAAATCGGATGATAGATTTATTACCGATGATGAAGAAGACTGATAAGTTTCTGGATAACTATCGTTTACAAACGGTATTGGCTAAATTTGATATAGTGAATCAGGAACCCCATCATGCCCTGGCAGATGCGAAAGCTACTTTTGCGCTTGCGGACAAACTCATTGAAAACCGGGTTTTGAAAATTTAGGAATCCCGGTATGACGGCGTTTTTTTAGT # Right flank : TTATCAAGGTTTTTAGATGCTGGACAATATCACATATTTCCAGCAGATGGCAGAATCCGTATTTAAAGATTCCAAATAGAAATATGGCCTTTTACATGGCGCTCCGTTCTTAAGGAGATATCGGTTGTTCAGAAGCGTAAGAAGGAAACTAGCTCCCAATCCGATCAGATCAGTGTTAGTCGTCGCGTATGTTATACTGGTGAAATTAGAAATCGCTTAATCCGGTCGTATGCCCACCGAATGAGCATTTTTCGGGCAAATAAACCACCAAAAGAAAGGATTGTCACGATGTCAATTTTAAATTATGCGGAGCAGGCTTCATGGTCAAATGGGTTTGGTTCCCAACAATCACCGATTGATCTGCGTCAGGCTAAACCCACTAGTGTTACTAATTTTGTGGTGACAGATCCATGGATAGCTGACCGAGAAATCGATGACCAAGTGACCATTCAGCTTGCTGGTCACGGGACAACGCGAATCAATGAGATGACTTGGCATTT # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCACGTGTGTGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //