Array 1 52358-52024 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPO01000028.1 Streptacidiphilus neutrinimicus strain NBRC 100921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52357 29 100.0 32 ............................. AACGCGGGCAGCGCGCTGTCCGGCCTGGTCTC 52296 29 100.0 32 ............................. GAGTAGGCGAGGGCGGCGCGGTCGCGGAGGAA 52235 29 100.0 32 ............................. AGGTCCAGTACCTGACCACCGCGGTACTGAAG 52174 29 96.6 32 ........G.................... CCCCCGCGAAGCCCTACGTGCTGCTCCACCGG 52113 29 100.0 32 ............................. ATCACCGGTTCGACGGTGCCTGTCACCATCTC 52052 29 96.6 0 ..........T.................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTCCGCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CTTCCTCGGCTTCGTCGGAATCGCCGCGCTTCTGATCGGATACCGCCGACTGGCGAAGTCGATCAGAGCCTGAGCCCGTTGTGCTGCGGATCGAAGCAGATCAGTCCCATCGACTCGGCGAGTGCTGCAGCGAAGGTAGATGCCTCGTCCGACATGCTCCAGCGCATCGGGAAGTAGACCAGCGGGCCGCTGGCTCCGCGGATCAGCGGCCAAGCCGCCCAGGGTGAGGTCTCGTCCTCGGACGGATGCCCCCAACGCTCAAGAAGCGCAAGGACGTAGGCCTCGATCCGCGCAGTCGGAGGGCGCTCCTCTTCCGCATCGAGGTAATGCTCGTAGAGGTCCCTGAAGATTCGGGCGGCGGCCTTGTCGTCCGTCGGCCGCTCACCCTCCCACACGGCCAAGTCGTAGCTCATGGTCGGGACCCTCTCACACGGTACGGACAGGCCCATGTGGCCGCTCGAACCATCCAAAAGAAACGGCGTCTTAATGTTCCTCCCAGT # Right flank : ACCGTGAACCATCCGCAAGCCCGAAGGCATGCGATCCCGGCCCCGACATCATCGTCTGGTACCGGGTGCCCACCCTCGACGACTCCGCCCAGCGCCTCGGCAGCCGCGGCGGCACTGATTGCTCCTCGACCTTCGATTCCATCCGGACTACGTCGCCCACCGGGGACGGATATTGCACCGAGGCTGCCTGGGCCAGCGACAAGCCGGGCTACAACGCGGACGCCGATCCGGCGTCGCCGTTGCAACACGTCGTAGTGTCCGTCGGCCCGGCATGCGACTCGGCGAATGGGGACTCGTCTGGGGGTTCGTCCTCCGGCGGCGCCACAGCGCCGATCTTGTCTCCCTCCGGGAACTACTACCGGGCGGGAGAGTTCTGCCCGCATGACGACGATGGCCTGTCCACGGTCGACGCGCATGGCAATGCGATCACGTGCAGTCAGGTCAACGGCTACTACCGCTGGCACTACTGAGCGCAGGGATGTCCTAGCGAGGAGGCCCCG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 58663-57535 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPO01000028.1 Streptacidiphilus neutrinimicus strain NBRC 100921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58662 29 100.0 32 ............................. CCTGCTTGGCCTGCAGCACCTGCTGCGATCCG 58601 29 100.0 32 ............................. ACCCACAGGCTCGGCCGCGGGTGGCTGTAGAC 58540 29 96.6 33 ............................A GTACAACCCCTCCCTCTTCATCCACCCCAACCT 58478 29 100.0 32 ............................. CGAGTCGGCGCGCTCATCTCCCGGCCTCCTCG 58417 29 100.0 32 ............................. TCCTGATCCCCCGCGGGGCCACCGCGTGTGGC 58356 29 100.0 32 ............................. CCTGACGACGCCTGGCGTGCCCTCGACGCCCC 58295 29 100.0 32 ............................. GTCGGCGGCGTCACCCAGGCCGTCACAATCGT 58234 29 100.0 32 ............................. CCGCCGCGCAGATGACCCCCGCGTCGCCGTTC 58173 29 100.0 32 ............................. CCCGAGGACGCCCTCGCGCTCGCGCTGGAGCG 58112 29 100.0 32 ............................. ATGGTCCGCCCTGACTGCGCGGCCGTTGCCTA 58051 29 100.0 32 ............................. GCATCCGCATGACGCAGGGAGACGGCCGGTAC 57990 29 100.0 32 ............................. TATTCGTTGGTGAACGTGTGCTCGGTGATGAC 57929 29 100.0 32 ............................. ATCTCCGCTTGTCCAGCGACACGCCGAAACTT 57868 29 100.0 32 ............................. TCAGCGGACGCCTACTTGGAGGTGGGGTGAAC 57807 29 100.0 32 ............................. CCGCTGGCCAGGGCCTGGTGCAGCAGGTGGCA 57746 29 96.6 32 .....G....................... ATACAGAAAGGGCTGTGTACTTTGCGTACACA 57685 29 100.0 32 ............................. TTCGTGTTCTACGACCTGGGCGGCCGCGAGGT 57624 29 100.0 32 ............................. TGCTGGGTGTCCGGCACCTGGACGGCGAACAC 57563 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 19 29 99.6 32 GTCCGCCCCGCCGACGCGGGGGTGCTCCG # Left flank : CCCCGCGATCGTCCGCGACATCCAAGACCTCCTCGATCCCAGCCCCACCTCCACTACGGGCGAACCTGACGACCAACCCGACCGCCACGACGCCCACATGGTGCGGCTGTGGGACCCCGTGGCCGGCGTTCTTCCCGCCGGCGTCAACTACGGCCAGTAGGAGACCGGATGCCTTCCATGGTTGTCATCGCCACCACAGCCGTCCCCGACCGACTACGCGGGGCCCTGTCTCGGTGGACAAGCGAGGTCATCGCCGGAATCTTCGTCGGCTCAGTTTCCGCCCGGGTCCGCGACGAACTGTGGGCCGCTGTCGAACAGGTCGTAGGAGAAGGTGCCGCGCTGCTCATCCACCCCGCGAGCAATGAACAGGGCTACGAACTCCGCACCGCAGGCATCCGCAGACGAATTCCGGCAGACTTCGACGGCCTCACCCTCATCCGCATGGTCGCCCAAAATCCCAAGAACGAGCAAAGCCTCTAGAACGCAGCAGGTCGGGAAGT # Right flank : CCTCTTAACGGGGGTTTAGACGCCGTTTCCTTTGGCGAGCTTGCGCGTTGGACCTGTCGTGGAGGGTCTTGTCGAGCGTCTGGTACCGGACGAGCTGTGGGAGCCGTTCAGGCGGGTGGTTCCGGAGAAGCTCGTCCGGCGTCCGCAGGGCGGCGGTCGGCGGCGTGCTGGTGACCGGGAGACATTGGCAGCGATCGTGTTCGTGGCCACCTCGGGCTGCACCTGGCGGCAGTTGCCGTCGGTGTTCGGGCCGTGCTGGCAGACCGTGTACCGGCGCTTCGCCCAGTGGAGTCGCGATCGTGTTTGGGCTCGGCTGCACCGCGTGGTCCTGGACGAGCTCGGCGGCGACGGTGAGCTGGACTGGTCCCGGTGCGCGATCGACTCGGTGAGCATCCGCGCTACCAAAGGGTGCCCCTATGGTTTTCGTCAAGCTGGCGTGACGGCTGGGGCCTGGTAGAAGGTGCCGTCGCGAAGCATGGCGAAGAGCACGTCGATGCGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCGACGCGGGGGTGCTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.5 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 68507-72925 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBPO01000028.1 Streptacidiphilus neutrinimicus strain NBRC 100921, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 68507 29 100.0 32 ............................. TCCAAGCGGACCGCTGAGCGACGCGGATGGCA 68568 29 100.0 32 ............................. GTCACGTGGGGCACGAAGGCAGCCGACACGAC 68629 29 100.0 32 ............................. ACGGTGAGACGCCGGAGCAGGCCGCGGCGCGG 68690 29 100.0 32 ............................. GCCAGCACCTGGGCGCCGTCGACGACACCCGC 68751 29 100.0 32 ............................. GTCTACCAGGACTCCTACCGTCAGTCCTCGGG 68812 29 100.0 32 ............................. TCGCAGGGCGGCCGCGGCGTTGTGCGGGGATC 68873 29 100.0 32 ............................. TCCCAGTACAGCTCGACGTCGATGGGGGGCGT 68934 29 100.0 32 ............................. TCGACGCGGCACGCGAAGGCGAAGGTGCCGCA 68995 29 100.0 32 ............................. CTGACCGGCGGAGTCGCGATGACCGCCGAGGC 69056 29 100.0 32 ............................. GCCACAACGACCAAGAAATGACGGCCCTTTGA 69117 29 100.0 32 ............................. GTGACGGTGGGATCGGTGAAGGGCATTGTCAG 69178 29 100.0 32 ............................. TTGATGATGTGACTTGACACACCGGCCCCACT 69239 29 100.0 32 ............................. ACGTCGGCGACCTCGTCGAGGTCTCGGGCTTC 69300 29 100.0 32 ............................. CTGGTGACGACGGTGGTGCCCTGGACGACGCA 69361 29 96.6 32 ............................C TCCCCGACCGGGGCGTGGCAGTGCGGACACTT 69422 29 100.0 32 ............................. TATTCGTTGGTGAACGTGTGCTCGGTGATGAC 69483 29 100.0 32 ............................. CCACCCGGCCTGAGAGTGGTTGCTCTCAGGCC 69544 29 100.0 32 ............................. CTCGACAGGTCCGGGACGATGACCTGTCCGTT 69605 29 100.0 32 ............................. GCGTCCGCATGACGCAGGAGACGGGCCGGTAC 69666 29 100.0 32 ............................. GTCGCGGTCCAGTTGCCGGCGTTGGTCTGGTG 69727 29 100.0 32 ............................. AAGCGCGACGCCGAGGCGAAGGTCGGCCGGAC 69788 29 100.0 32 ............................. CCATCTCGGACGTGACCCCCGGCCCCACCACG 69849 29 100.0 32 ............................. TCGTCGGCCCCCTCCCCGGAGGGGGCCCCGGC 69910 29 100.0 32 ............................. CGCTTCTACGGCGTGGCCGGGCCGCTCCTGAC 69971 29 100.0 32 ............................. ACCTATCTGCACCATGGCGAGGACGGCCAGCC 70032 29 100.0 32 ............................. TCCGGTCGAGCCAACTCCCCACCCCCGTCCCA 70093 29 100.0 32 ............................. TACCTCGCCTGGATGGTCGGCATCAGCGCGGC 70154 29 96.6 32 ............................T CCGCGGGCCTCCCTCGCTCCGCTCGGTCCTGC 70215 29 100.0 32 ............................. TACCAGAGGGCCATCACGGGCGGGGCCTCCAG 70276 29 100.0 32 ............................. TAGGCGGACACCCGCTTGAATGTCTACCTAAT 70337 29 100.0 32 ............................. CCAGAGGGTCAGCCGCACGTTGCCGGCGTGGA 70398 29 100.0 32 ............................. TCCTGGAGGTTCGTCTTGCCGTGCGCCACGGC 70459 29 100.0 32 ............................. CCGGGGAGCGCGAAGCCGGGGAGCGGGATGCG 70520 29 100.0 32 ............................. AACCATGGCTGATGTGATCGTGCACGAGGACG 70581 29 100.0 32 ............................. CCACTGTGCGGCGCATGTGACGGACCGGCCGG 70642 29 100.0 32 ............................. GCGACCTGGATGTCCGCGGCGGTGGTCGCGGG 70703 29 96.6 32 ............................A CGCGCGCAGGCGTTCACGCTCCTCGACGCGAC 70764 29 100.0 32 ............................. CAGCAGAGCGCGTTCGAGCACCGAGCCATGGA 70825 29 96.6 32 .........A................... TAGCGCAGCGCGGAGAGGCCGGGTTCGGTCAG 70886 29 100.0 32 ............................. TTCGTCCTGGGCCAGTCGAACCAGTGGGTCAC 70947 29 100.0 32 ............................. CTGCCCTGCAACCGCTGCACCGAGGCGGCGTC 71008 29 100.0 32 ............................. CCGGCGGCCGCGGCCAAGCTCCGCGCGCAGGG 71069 29 100.0 32 ............................. GCTGGAAATGAGGGCGGATTGTCATGACGCTT 71130 29 100.0 32 ............................. ATCGCCGCTACGGTGCCGATCGAGCGACGCGG 71191 29 100.0 32 ............................. GCCACGCGCGAGGCCGAGCGCAAGGAGCTGGA 71252 29 96.6 32 ............................A CCTTGTGCAGCCTGATGGCGAACGTCAGGGTG 71313 29 100.0 32 ............................. CCCGTCCACATCTACAACTGCTTCTTCAACCT 71374 29 100.0 32 ............................. TTCCACGGCGGGAACACCCCGAGTCATCGGGC 71435 29 100.0 32 ............................. ACCGGGCACCCGCTGCTGACGCCGGACCAGAC 71496 29 96.6 32 .....................A....... ACGTGCAGGCCGCGGACGCCGTCGGCGAACGT 71557 29 100.0 32 ............................. TGTCCCGTGTGGGAGCAGGAGGTGAGCGTGGT 71618 29 100.0 32 ............................. CAGCCCAACGGCCAGACGATGTACCAGGTCAG 71679 28 86.2 32 ............A....-..A......T. GCCGCTGACGAGGTGTCGCGGGCGGAGACTGC 71739 29 93.1 32 .....TT...................... CCGAGACGCATAACGCATCGAAGCGCCACGCT 71800 29 100.0 32 ............................. CACAGTCGCCCGTAGGGCGCCGATATCCCCGG 71861 29 96.6 32 ..............G.............. CAGAGCGGGCCCTTGAAGTGCCAGGGGCGGAG 71922 29 100.0 32 ............................. GCAGCCACCCTCCGATGACGGACACCGCCACC 71983 29 100.0 32 ............................. GCAGCCACCCTCCGATGACGGACACCGCCACC 72044 29 100.0 32 ............................. GAACCGCAGCTGATGGCCGCCATCAACGTTGC 72105 29 96.6 33 ............................A GCCGAGCAACTCGGACTACTTCTCCCTTCTGCC 72167 29 100.0 32 ............................. GCCCAGTTGGAGACGGGCCAGACAACCACGAG 72228 29 100.0 32 ............................. GTAGCTCACAGCAGCATCACCAGCACAGACAC 72289 29 100.0 32 ............................. CACGCCGGGCCCATCATCGGCGGCGGCGTGCT 72350 29 100.0 32 ............................. TTCTCCGCGCTGTCCATCGTGTTCTTCATCCT 72411 29 96.6 32 C............................ CGATTCCTGCTCCTCGTCGGCGCTGTTGCCGC 72472 29 100.0 32 ............................. AAGCTGGGCCCGCTCCCGCTGGGGGCGTGGCT 72533 29 96.6 32 ....A........................ CCACCGACCGGTCGGCCCGGGAGACGTTGATG T [72550] 72595 29 100.0 32 ............................. ACCTACGCCACCGACGCGGAGCTGGAGTCCTT 72656 29 96.6 32 ..............G.............. CTGGAGCGGCCCTCCCCGCTCGCGTCGCACCC 72717 29 96.6 29 ..........................T.. GCCGTACACACGGCGGTGTGGACGGCTAC 72775 28 93.1 32 ..-G......................... TCCATGGCGGTGTAGCCGAGCCCGTACGCGGA T [72780] 72836 29 100.0 32 ............................. AAGGCACTCAGCGCGATGGGGCTGGACAACGC 72897 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 73 29 99.1 32 GTCCGCCCCGCCGACGCGGGGGTGAGCCG # Left flank : TCCCCGCGACGTCATGACCGACACGATCCGACGCCATCCGCGACACATCACCAGCGAACGGCTCGCTCAACCAACCGCGCGCCCGCGCCGAACAATGCTGGAACGCTGAGATCTTCCCGATGTCGTGCAATCCCGCACACAACCCCACCAACTGGCGCGCCCGACCCAGGTCACCGTCCAGGCCCATACCCCGTGCGATCGCACGACGCTGGCTACCCGCCAGGAACACATCCCACAGATGCAACGCCATGGCCGTCGCGTCCAACAGATGCCGCACCAACGGATAAGGCGGCAACGCCCGGGCCAGGCCCCGCTCCTTACCCCACAACGACTCATCCACGCCTGCCACAGCGACCTCCCCAACCGACACCCGCAGTCCCGTCAATCCAAACAGCCCCCGCCGACAAGCACCCCGCCGACCAGTAACGTGGAGCCATGCGCCAGGGAGAGCAGCACGTAAAGAACGTGCAAAGGCCACTCTGACGCCCAGGTCAGGAAGT # Right flank : GTCAGCGCGTCACCTGGCACGGCGAGTCCGCAAGGTTGTAGCCAGCGCTGGGCCGATCAGGGCTGGCGGCTCGACCTCCCTCGGTTGCTGGTCAGGCCGCAGGTGCGGAGATGACTGCGAGGCTGGTCTGGGTGGCCTGTACGAGGCTCGTGAGCAGTGTCGGGTCCATGTGGCCGGCGTCAAGCGCGCTGGCGGTCTTGATCTGGACAAGCTGGGTCAACTGGCGGCTAGTGAGCAGGGTGCGGAGCTTGGGACAAGCCAGCAGTTCGCGGGCGGCGTAGCCGTCCTGGCTCCGCAATGCGGTCGCGTAGAGGTCGGCGGCCACCTGGAGTGCCGCGGGTTCGTCCGTCGCCCCGAGGGTGTGCAGGATGCTCATTCCGAGTCGGGTTCGCGGGAGGGTGAGGCCGTCTTCAGGGGGATGCTTGAGGAAGCGCTCCGCCAGCTCGGACCCGAGCTTGGGGGGTTGATCACCGGCGTCCCGGAGGGCGACCTGGTGCAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCCCGCCGACGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //