Array 1 581802-591847 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039887.1 Neisseria subflava strain ATCC 49275 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 581802 33 97.0 32 A................................ TTGTAAGGACGTACAAATCTGCCATCCGCCGT 581867 33 97.0 33 .A............................... AGTATGAAGCAGACAGAAAACGCAAAGAAGACG 581933 33 97.0 33 A................................ TGTACATCAACTTTCCAAATGCCTGTTTTAGGG 581999 33 100.0 32 ................................. TTTTCGTTTAAAAATGAGAGACACAGAAGTCC 582064 33 97.0 34 .T............................... GATCAAGAAGTGGGGTGTGAGGCGGCTTATCAGG 582131 33 97.0 35 A................................ AGCAACGGTACCGTCATCAGCCACAACCGCGCCGA 582199 33 97.0 33 C................................ TTTGCCAAAAACATGGAGGCGCACGGTATCAAG 582265 33 97.0 34 G................................ GACTACATCGACTACCCGGAAGACGAATTTATCC 582332 33 97.0 34 C................................ AGGCAAATTGCTGCCTGCTCAGAAGGAGTGGGCA 582399 33 97.0 33 G................................ TTAGTCCTGACAAACGAAGATGAGCAGTCTCTG 582465 33 97.0 33 A................................ ACGTAGCAATAGCTAAAGCTATAATGGCAGCTG 582531 33 100.0 33 ................................. GTTTGCGGTTTGCTCCTGCATAAAGCAATGTAG 582597 33 100.0 32 ................................. ATCTCAACGCTGGCAGGTAGAGCCGACCCGAA 582662 33 100.0 33 ................................. AATAAAAACGCGCGTATAGTCAAAAATCACACC 582728 33 97.0 33 G................................ GTTAGTACCGCAATAATAACCACGCATACAATA 582794 33 97.0 36 A................................ ACTTTAAAACGGCTAAATTGGGCGGTTATACCGAGC 582863 33 97.0 32 C................................ AACTCACTTAAAGGAAAAAATCATGAATATCA 582928 33 100.0 33 ................................. GTGTAATTTCGATTTGAATGGCGGTAGTTGTGA 582994 33 100.0 33 ................................. TTAAAAATGTTTCTTGATCAAGGACTTGTGTAT 583060 33 97.0 33 C................................ AACTTTGGAGCAGCTTAAATGGCGAATATCACG 583126 33 97.0 33 G................................ TCTATCCTATGATGCTGCGTCTACCGTAACTAC 583192 33 97.0 33 A................................ GGCAAAGACTCCAACGGCAACACAACGGCAGAA 583258 33 97.0 33 G................................ AGTCATCATTTAATCCTTTTGAAAATCAATAAA 583324 33 97.0 33 A................................ TTCAGCTTTTTGGGCAGTATACTCAAAATGGGC 583390 33 100.0 33 ................................. ACGGAAATGTTTGGACGTTCGTTCAAACTTAGG 583456 33 100.0 33 ................................. GGGCGGATACCGCTACCCTACGCCGGCGATACG 583522 33 97.0 34 G................................ CGCAAAGACTGGCTCAAATCACGCGGCCTGTTCG 583589 33 97.0 31 C................................ GGCCGTGATCGCCCTTATTGAGGCTGCCATC 583653 33 93.9 32 GT............................... AGTGTTAAACAACAACGGCGCAACGACTTGGA 583718 33 93.9 33 AA............................... GCTATTTTATGGCGAGCCATTGGAGCAATTTAT 583784 33 100.0 33 ................................. AGATAGTTCGGGCGATTTAGGAGATATGCCGTC 583850 33 100.0 33 ................................. ATTTCAACTTTTGGATTATTGGCGCAATAATCC 583916 33 97.0 34 C................................ GATGTGATGAAAAACTGGTCTGAAATTGCAGAAT 583983 33 97.0 32 G................................ ATGCTCCTGTTGCAGTGCAAACTCAACAATAT 584048 33 97.0 32 G................................ TAGTGAGTGTAGCGAGGGTTTGCCCGTTAATG 584113 33 93.9 33 AG............................... ATCTCTCGAGATGGTCAAAATGAAACTCCAACA 584179 33 97.0 33 A................................ AATTGATAAGCTAATTTTTAAAGACCGATTATA 584245 33 97.0 33 G................................ GCAAAACGAAATAAAAGGGGACTTATTTTGGGG 584311 33 100.0 33 ................................. TCAATTTGGATTAACTCGTCCTCGTATGTCATT 584377 33 97.0 34 G................................ AACTATTACAAAGGGGTTACCAGTAAAGAGCTTG 584444 33 97.0 33 G................................ AATAGCTACACGCCCATTAATGAGGCATAGCCA 584510 33 100.0 33 ................................. ACCAATAGTATCAAGCATTTCAATAGTTTTTTG 584576 33 97.0 33 A................................ CGCTAAGACGCGGCAGGGAAGACGGCGCATTCA 584642 33 100.0 32 ................................. CAAAATCTGAAAAACAAAGCGAAGTACGCCCT 584707 33 97.0 34 G................................ CTCAAAAGTGCCAGTAAAGCCAAGCTCTTTTTTA 584774 33 97.0 34 G................................ CTGAACCGCCGAAGCCACATCTATCAGAAGATGA 584841 33 97.0 33 C................................ CTTAGCTGTTCTCGCCATTTGCGAGAACCAGCA 584907 33 97.0 35 G................................ GTTCTCCAAATAAAAAAGGTCGTCTGAAACTCAGA 584975 33 97.0 34 C................................ GGCTTTGGCTGCTCAGTACGCAGCCTTATTAGAA 585042 33 97.0 33 C................................ GCCTTTACAGCCGCCTGCCTTGTAGTCCCTTGC 585108 33 97.0 33 C................................ CAATCAGTTGTTTTAACAATTGTAGCAAACTAC 585174 33 97.0 33 A................................ CACACCGCTTCGCCGACTTCGGCGCGCTTCACT 585240 33 100.0 33 ................................. AGTACCGTCCTCAATTTCAGCACGGTCAAAGCC 585306 33 97.0 33 G................................ AATAGAGCCAACAGACCAATGCCAATCTACAAA 585372 33 97.0 32 G................................ TTAATAGCAGCCAAAATAGCCTTAGCTATAGC 585437 33 93.9 33 AG............................... CCTGAGCCGGGAACGCCTGTAATTAGTGTAATC 585503 33 97.0 33 A................................ ATGTATGCAAATATGCACAAGACAAGCATGCTT 585569 33 97.0 33 G................................ ATGTATGCAAATATGCACAAGACAAGCATGCTT 585635 33 97.0 34 G................................ TGGGTCAGCACCTGCAGAGACAGGCACGCATTGG 585702 33 97.0 31 G................................ TAATTGCCGCCGCTCCCTATCTGTTATGCTG 585766 33 93.9 33 CT............................... TTTAGGCTTGTTTGGGTTGTTTGGGCTAGTCGG 585832 33 100.0 33 ................................. CGCACCGGTGTAAACCGCGCCGGCGACCGGCTC 585898 33 97.0 33 G................................ TAAAAAATATTTGGGTATTAGGCGGGCGGTTTA 585964 33 97.0 33 C................................ TAGCGTGGGTTAGGGTTAGCAACGGCTCAAATA 586030 33 97.0 34 G................................ CCAAGTGACCAAGCCTTGCAACGTCGTGGCTACG 586097 33 97.0 35 A................................ ATTGAAAACGCCCAGCCGGTCGCTGCACTGGCAGG 586165 33 97.0 34 C................................ TACCGCAAAAGCATATCGAGCAGATGATGTTTTA 586232 33 97.0 34 C................................ CGCCCTATATCCAAGAATTAACCGAACTCCGCCA 586299 33 100.0 33 ................................. ATTCGCTTATGTTTAAAGCCGTAATAACGCAAA 586365 33 100.0 33 ................................. AAGCCCTGAATGAGTAAATCAGCCCATTGAGGG 586431 33 97.0 34 C................................ TGAATTTTGCGCCATTGTTAAGGCAGTTTGCGAC 586498 33 97.0 33 A................................ TACATTACGAATCCTAATTTGGGCGCGTCCGTC 586564 33 97.0 33 G................................ CCTTGAACGTCGCGATGCAATGTTGGCACTGGC 586630 33 97.0 34 G................................ TGATTGTTCGTATGGGTACAGCTTGTCGAGCTTT 586697 33 97.0 33 A................................ ATACACCCGTATCTTCGATGTCCGCACCCTGTA 586763 33 97.0 35 C................................ CACGACGGCGACGGCGTGTCCGAATTGGGCACCAT 586831 33 97.0 34 C................................ AAAAAAAAAATCGGCGAGCAAAAAATCCGGAGAA 586898 33 97.0 33 A................................ AATACTCCTATAAGTTTTAGTAAATTAAGGCGT 586964 33 100.0 34 ................................. AAAACTAATTAAGGAGCTTAAAATGGCTAATACT 587031 33 97.0 34 C................................ ACGACCAGCATATTGACCGTCCAGAACGTTAAAA 587098 33 97.0 34 C................................ GCCATACGCTTGTCGAGGGTCTTTTACTTGCCGT 587165 33 100.0 34 ................................. TTAATGTTTAAATACTTTTTATTGTTTACACAAT 587232 33 97.0 32 A................................ ACAATAGTAATGTTAATCTAAGTTAACGTGTG 587297 33 97.0 34 .T............................... ATTTAGTATTTACCGCGTTAGCAATATGGGCAAT 587364 33 100.0 33 ................................. TGCTCCTAAATTATGCTATACGGCTTGCCGTAT 587430 33 97.0 33 A................................ TTAATACCGGCCAATATGGCCTTACCTATTGCA 587496 33 97.0 38 G................................ GCAATGCTTGGCACGTTTAATAACTCGGTAACTGCTTT 587567 33 100.0 33 ................................. TTTTAACCTCTTTTAATGTTGGTAATGCTTGGC 587633 33 97.0 33 A................................ AAAAGAGTTAAACGCTCATGAGGCAATGCAAGG 587699 33 93.9 31 CA............................... ATAAGTAGGCTTTTGGGTGTAATAAACATTG 587763 33 97.0 33 .T............................... GCCTAACCAATGAATGCATTATACAGGCTGTTT 587829 33 100.0 33 ................................. CTTTTGGAGATTTTGAAATGACTGAAATGGTTA 587895 33 97.0 33 A................................ TCATTCGTGCGCCGCAATGTTTGCTGATATGGT 587961 33 97.0 33 C................................ ACTGGATTCACACAAGGGAAATCAAAGGCAATT 588027 33 97.0 34 G................................ GGCAATATCGACACCCAAACTGGTCAAGTCGGCA 588094 33 97.0 32 A................................ TTCATATCTACGTGAACCAAACCTTGCTCAAG 588159 33 97.0 33 C................................ TTATAATTTGGAATATTTGCTCAAAATCGTCAC 588225 33 100.0 34 ................................. TGCGTTGGTCTTCCATTTTTTTAAGCGCCCAGTA 588292 33 97.0 34 A................................ TATCCCAATAACGCATTAAATCGTCAAAATTTTA 588359 33 100.0 33 ................................. AGTCAAGTGAAATTGCGACTGATTATATCGTAT 588425 33 97.0 33 C................................ CAGCTAAGATTAGCCCAAATGGATTTGTTAATA 588491 33 97.0 33 G................................ AGATACTTTTTGGATGTTATAAGTTAATAGTCG 588557 33 97.0 34 G................................ GTAGGCCAGCAATGCGCCACCTACATAAACATTG 588624 33 97.0 33 G................................ ATCGAATTGACGGTTCTGAAAACCATCATTGCA 588690 33 97.0 36 G................................ TCCGAAGCGGTCGAACGTTATCGTACCCTTTATGAA 588759 33 100.0 35 ................................. TCGGCATTGCCGTTGCAATCGTAACCATCGGCGTA 588827 33 97.0 33 A................................ AGCTCCTTAATTAGTTTTAAATTTAAGGCGGTT 588893 33 100.0 32 ................................. TCATACGGCTCGTCGTCCAATCCGTTTCATCT 588958 33 97.0 34 G................................ AGTGTGAATATGGCGAAGAAGCCAAAAAGGTCGA 589025 33 97.0 34 A................................ CGTTTACAAAAAACATTGGTTACAAACCAGAATA 589092 33 100.0 34 ................................. TGCTTACCGGTGGGAACGGAATACTTACAGGATA 589159 33 97.0 33 C................................ AGAAGCATGAATGTTCGCCATGCTTGCAAGTGC 589225 33 100.0 34 ................................. AGAACAGGCTTGGATAAACAAGAGGCCTACTACT 589292 33 100.0 35 ................................. AAAACCAAAATCTGAAACGCCGTTTTCTTTTAGAT 589360 33 97.0 32 C................................ ACCCTGCAGGTTTTTAGCCTGGAAGGGGCGCA 589425 33 97.0 32 C................................ ACCCTGCAGGTTTTTAGCCTGGAAGGGGCGCA 589490 33 97.0 33 C................................ TTTTGATAGCCCAATTCCCCGCCCCTTGTTATG 589556 33 97.0 33 G................................ AAAAAATCAAAAAAGACTTAGATCTTAAATAAA 589622 33 100.0 33 ................................. GTATTTGTGCTTTTTGGCGATGGTCTCGATGAT 589688 33 100.0 34 ................................. CAAAAGTACGCCCTTGTAAACGCAGGTATCAATC 589755 33 97.0 34 C................................ CAGCGCATGAAGGCATGGATGCTACGGGTGTATC 589822 33 97.0 35 C................................ ATCTTCGCACCTTTCTAATTTTCATCAGGCGGTAA 589890 33 97.0 33 C................................ AGGGGTGTACGGCGCACTAAGCGCGGTATCAGG 589956 33 97.0 33 G................................ ATCTCAAGGTACACCGCTTAAAGAGATCACAAA 590022 33 97.0 34 A................................ ACAACCTATGGGGGCATCACATCACGCTGTACAA 590089 33 97.0 34 C................................ CCGCAAATGCGCGAGTGGGTCGGCTCACGTTAGA 590156 33 100.0 33 ................................. CGTAGCCACGAGCGAAAGCTGGAAAGACAGCAA 590222 33 97.0 32 C................................ CCGTCCTGCCTAAGGCATCTTGGGTTAATCGT 590287 33 100.0 33 ................................. GGCGTATGGTCGAATGGGAAAGATGCGCTAATC 590353 33 97.0 34 C................................ GGGAATACCAGCGAGCCCCAAAAGGCCGACCAAA 590420 33 100.0 34 ................................. ACATTGTGGCTTGCCACAATTACAAGCGGTTACT 590487 33 97.0 33 G................................ TGCATTCAATCAGCCTTTCTTAACGGGTTGGAA 590553 33 97.0 32 A................................ CTTTTGTGATTAAACGTCTTTGCGGGCAGACG 590618 33 97.0 33 C................................ ATGCGGTAGGCAACAAGAGCAGGCATGAACAAG 590684 33 97.0 33 G................................ TTTGTGCAATGCGCCTTGATAGCGTAAGAGGTT 590750 33 97.0 33 G................................ CGTACCGAAGAGTTGCGAGAGCGTCAGGGCGCG 590816 33 97.0 34 G................................ ATACCACCTAAATTTTTTGCATAAGCCGAAACTT 590883 33 97.0 34 G................................ GGGCCGATACCTAGCGAGCCATTGTCGTCTCCGC 590950 33 97.0 35 A................................ GTTTTGCCCGGTCATGGCGTCGGCAATCGCCTCCA 591018 33 97.0 35 C................................ GGCTCGTGGTCGCAGGTGCCGACGTGATGGCCGTC 591086 33 97.0 34 C................................ TGTACTTGCTTTAGGAGATTTCGGAAATAACCTA 591153 33 100.0 34 ................................. CATCTTTAGAAGTTTTAGCTATTGAAATCAACAA 591220 33 97.0 33 C................................ ATAAACCGCGCGGCACGGTCTGCCGCATTTAAA 591286 33 100.0 33 ................................. CGCAATATTGCCTATACCACTACTGAAGAAGGC 591352 33 100.0 33 ................................. AAACAGAGCGTGGCCGCCGCGCCGTTTTTCGGG 591418 33 93.9 33 C............G................... AAAAAAACACGCTTTCGGCTGGTGGGCAGGAAG 591484 33 93.9 33 G............G................... CTCTGTATCAATCTTCAAAAAGACAGAATGATC 591550 33 97.0 34 .............G................... TTAAAAGAATGGCCGGCTCGTAATTGTATTATCA 591617 33 93.9 33 A............G................... TATATGCACTATTGATCGTAATCACAGGGTTTG 591683 33 97.0 32 .............G................... GCCTTCTGGAATAGGCAGGTTAGGAATAATTT 591748 33 97.0 34 ..........................C...... TCTAGTAACTACGAACTCTATGACGACCTATTCC 591815 33 75.8 0 GT..........TG..T......A....C...T | ========== ====== ====== ====== ================================= ====================================== ================== 152 33 97.4 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAGGACGCGGAAGGACAGGCAAGGCTGCGACGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCAGTGTTCGAATGCGACATCGCGCCCGACCAATGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCTGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCAGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCACGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACTTGACGGAGCAAGGCTTTTAAGAGGGGT # Right flank : TATCGTCCAAGCAGGCTACTCTTCTTCGGTGCGCAGGAAATTGCCTGCCAAACGGGACAGCTTCATGACTTAGGGAAACATTCGGAAGCCTTTAACCGCCGATTGTATGGTGGCCCATCAGTCGATCATGCTACCGCCGGAGCGAAAATTGCAAAAATGCTTGCTTTGTAGTTAATTCCAAAGTATAAGCTGTTGTTCTCTTTCTTAGGCTAGATAACTTTAATTAATGAATTAAAAGGAAAAAATAATGGAAATCAAACAAACCAATTCAACCATCAAATCTCGTGCTGCGGTAGCATTCGCCCCAAATCAACCCTTACAAATTGTGGAAATCGATGTAGAAATGCCCCGCAAAGGCGAAGTGTTAATCCGCAATACCCATACGGGCGTGTGCCATACTGATGCATTTACATTATCAGGGAGCGATCCTGAAGGAGTATTCCCTGTGGTGCTTGGGCACGAAGGTGCGGGTGTGGTTGTTGCTGTGGGCGAAGGTGTGT # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.29, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [5-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1781393-1780036 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP039887.1 Neisseria subflava strain ATCC 49275 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1781392 35 91.7 30 T......A-........................... TTCGTTTTTATCGGCAAATCCGACGCGGAT AG [1781388] 1781325 36 97.2 30 A................................... GAACCATTCCGTACTCGTCCATCAAATCCA 1781259 36 100.0 30 .................................... CGGAAAACAACGGCACCGAGCCCATGCGGT 1781193 36 100.0 30 .................................... ACGCTGGCACAAGTCAAAGCCGCGCGCGCA 1781127 36 100.0 30 .................................... CGGCTTCAGGATGATGTCTTTATCGGATGG 1781061 36 100.0 30 .................................... TACCATCTACCAGCTTGGACGGCCAGAAGT 1780995 36 100.0 30 .................................... CGCTATTCAGACGCTGAACGCTGCCGCGCA 1780929 36 100.0 30 .................................... TTTCACTGTTAATTGCTCTACATACCAACA 1780863 36 100.0 30 .................................... TAACATCACACAAACGTGTTTCAGTCTCAC 1780797 36 100.0 30 .................................... TTTATCAGTTTCCATTTCTAAAAATTTTTC 1780731 36 100.0 30 .................................... TCGGCTTGGTATCGCTGGATTACGAGCCGG 1780665 36 100.0 30 .................................... AAAAAAGCGAAAACCCCCGAATCGGGGGCT 1780599 36 100.0 30 .................................... TGAATACATCGTCCGCGCATCTATGGTTCT 1780533 36 100.0 30 .................................... CTCCTCGGCATGGGGCAGGCGGCTGTGATG 1780467 36 100.0 30 .................................... CTTGATATTCAGTCCTATACAAACACTGCT 1780401 36 100.0 30 .................................... TTTTTTCACAGGACGGATCAATTGTCGAAA 1780335 36 100.0 30 .................................... TTTCAGTTATTCAGGATGGTGTCAAATGGC 1780269 36 100.0 30 .................................... TTATTGGTATATCGTTAATACCAGCTTAGG 1780203 36 100.0 30 .................................... CTTCATTGAGAGCCGTATGAGTCCTTATAC 1780137 36 100.0 30 .................................... ATAGACATGACGACAAAGCAAAACAGAAAG 1780071 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTACGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : ACCTAAACGGGAAACTCTTATTCTATAAGGGTTTCCCGTTTTATTTGGTCTGAAAAATAGGGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATATGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCTGTGGTGACTGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGTAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTACGCTGGCTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //