Array 1 122028-123825 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPF010000001.1 Aerococcus urinae isolate Au-21-B87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 122028 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 122089 29 100.0 32 ............................. CAAACACGATCAAGCTAATAAATGTTTTCATG 122150 29 100.0 32 ............................. AGTTACATTTCTAACACCACCAGCAAACACTT 122211 29 100.0 32 ............................. TATAAAGAGATCGCTTTTGAAATGGATCAAAC 122272 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 122333 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 122394 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 122455 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122516 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122577 29 96.6 32 ............................C AAAGCCTCCCACATCTTTAATCTCGTCCCGCT 122638 29 100.0 32 ............................. CATCACCCCTTAGCTGATCTCACAAGAGCGAT 122699 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 122760 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 122821 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 122882 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 122943 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 123004 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 123065 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 123126 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 123187 29 100.0 33 ............................. TATTGCCGTAATTAAGTCTACTATTTGGCGTTT 123249 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 123310 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 123371 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 123432 29 100.0 32 ............................. ACCCTGACGATCGTTTATACGATATAGATGAA 123493 29 100.0 32 ............................. GGGAGTCTGAAACTCTATACCTTAAAAAGACA 123554 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 123615 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 123676 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 123736 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 123797 28 75.9 0 ......-....C.......T.T.A...TG | A [123815] ========== ====== ====== ====== ============================= ================================= ================== 30 29 97.6 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGTAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 142776-143595 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJHPF010000001.1 Aerococcus urinae isolate Au-21-B87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142776 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 142837 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 142898 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 142959 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 143020 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 143081 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 143142 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 143203 29 96.6 33 ............................C CTAAGTTTTAAGCCATTCGAGGGCAAAATAAAA 143265 29 100.0 32 ............................. TCTTGCTGCCTCGTTAACTTGTTTTTCTGCCG 143326 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 143387 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 143448 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 143509 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 143569 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================= ================== 14 29 97.3 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //