Array 1 37431-38538 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVO01000064.1 Pseudomonas aeruginosa P37 contig00066, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 37431 28 100.0 32 ............................ TTTGCTCACAGACTTGAACCATCCAAGTAACT 37491 28 100.0 32 ............................ TATGCCAGCGGCAACAGCACGCGAGGCTTGAT 37551 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 37611 28 100.0 32 ............................ AGGCGCCCCCGGGCGCGGCCAAGCGCGTAGGC 37671 28 100.0 32 ............................ AGCACGCTATCTGCACATTCCCACCGGCATTC 37731 28 100.0 32 ............................ TTCTTGTGGGCGAGGGCGGCGGGCTGAAAAGT 37791 28 100.0 32 ............................ ATGATGAGGACGATACCCTCATCTCGGCGTAT 37851 28 100.0 32 ............................ TGGATGGCTCAAAGCTGTGAGCAAGGGCCGGC 37911 28 100.0 32 ............................ AGATGGCGCAGGCAAGGGCAATACAGACGGTC 37971 28 100.0 32 ............................ GTAAGAAGGCCTCGAAGATTTTCACGCTCGAT 38031 28 100.0 32 ............................ AAGCTGCGAATGTCCCCTAGCCGGTACAGCGG 38091 28 100.0 32 ............................ ACACTGACAGCGCGATCAAGACTGAGGCGAAA 38151 28 100.0 32 ............................ ATGGAGCTGGGCAACGTCGTCAGCACCCAGGT 38211 28 100.0 32 ............................ TGTCGGCCGGCGCCGTGCGCCAGTCCGGCCAG 38271 28 100.0 32 ............................ TCCGGCGCACTGCGGCAATCCTGCCGGCCGAG 38331 28 100.0 32 ............................ TGTTCGCCCGAACCTTCGCGGACCGCTTGTCC 38391 28 100.0 32 ............................ AGCAGTTCGAATTCGTCATCCAGTTCTAAGGT 38451 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 38511 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGATTAGAGATAGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTT # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48833-47063 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVO01000064.1 Pseudomonas aeruginosa P37 contig00066, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 48832 28 100.0 32 ............................ AATTGCTCCGGGGTCAGGCTGCTGGCGACCAT 48772 28 100.0 32 ............................ CTGATAGCTGGAGGTCTGGAAAGAACTCCACT 48712 28 100.0 32 ............................ TCTAGATAGGTGCGCTCGATGGCGTTGCCGGC 48652 28 100.0 32 ............................ AGATGACTCCACCGACTGACCACTCATCAATA 48592 28 100.0 32 ............................ AGTCTGGCGGCTCTACGTTGTGGTCAGAGCGT 48532 28 100.0 32 ............................ TGAAGAACTACCTGGGCCAGGCCAAGCCCATC 48472 28 100.0 32 ............................ ACACCACAGCGCCGAAATGGTTTGTCTTCTTG 48412 28 100.0 32 ............................ GGTCAGTACCACTCGATCTGTGAGGTGAGCGA 48352 28 100.0 32 ............................ GTACCCATGAGCGATTCGGCCCGAGAGGCCGG 48292 28 100.0 32 ............................ TGAAAGCCATCATCGCGACCCTGTCGCTGAAA 48232 28 100.0 32 ............................ TCCCTGAGGCGCGGGTTCGATGCTGATACCGT 48172 28 100.0 32 ............................ CAGGAACTCAACGATGAACGCGACCAGAACGC 48112 28 100.0 32 ............................ CAGTACAGCCCCGCCCCCCATCGGTAGATAGG 48052 28 100.0 33 ............................ AATCTGAGCGGTAACGTCACCCTGATCGACCCA 47991 28 100.0 32 ............................ TGAGCCTGACTCTTGCCGAGCAGGTCCGCGAG 47931 28 100.0 32 ............................ AAACGGATTTCGATCCCACTGATGGACGGTGA 47871 28 100.0 32 ............................ ATTTACAACCGTAAAACGAAAACCACGGAGTC 47811 28 100.0 32 ............................ ACGCAACGACCGTCCGCCGTCGCGTCGCCGCC 47751 28 100.0 32 ............................ TGGGCGAGATCGGCGCGTAGCCGTAAGGCGAG 47691 28 100.0 32 ............................ TTCCCCGGCGAGATCCAGCCGCCCCAGGACGG 47631 28 100.0 32 ............................ AGAACGAGCCACGGGTATCGGCCTTCGACTCA 47571 28 100.0 32 ............................ TCTTTGCAATCTACAACAACCCTGATCGACGA 47511 28 100.0 32 ............................ AGTTGGCGAGCTGGGCAACGTTGCTCGTCGAA 47451 28 100.0 32 ............................ ATGTTGTTCCTGGCCTCGGCGATCTTCTGGTC 47391 28 100.0 32 ............................ CGGATGAACTGCTCAGTGTTCATGCTGCCACC 47331 28 100.0 32 ............................ AGTTCTTCGTCAAGCACGTAGGGCGACTCGGG 47271 28 100.0 32 ............................ ATGACTATCTCGTCGCTTGAGATTTGCAGCCC 47211 28 96.4 33 ....C....................... TCGGGGCATGGGTCAGCCTCGCCGCGGTGCCGT 47150 28 100.0 32 ............................ TCCAGTAAGGCCAGCTCGGTCACGCGCATGCC 47090 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 122694-121586 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMVO01000072.1 Pseudomonas aeruginosa P37 contig00074, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 122693 28 100.0 32 ............................ TGCAGAAGCAGTGCTGCACGATCGTTGATGTG 122633 28 100.0 32 ............................ AGGAACTGTTCGTGCCGCGGCACCCGTTCGCC 122573 28 100.0 32 ............................ ACCGTCTGGCCTTCCTTGGGCTCGGCTGGAAG 122513 28 100.0 32 ............................ TAGAGCGGGCTTTCTCGTTTCTGGAGAGCCCG 122453 28 100.0 32 ............................ TTCTTGCCGGTCACAGTTGCCGAGTCAGCCGC 122393 28 100.0 32 ............................ GATCCGGCGATGGAGTGGAAGCAATACCAGTG 122333 28 100.0 32 ............................ TCGGTGGTGTATCCCTGCTGGGATGGCTTGCC 122273 28 100.0 32 ............................ TCTACGTCCGCCAATTCTCTTGGCCCGTTCGC 122213 28 100.0 32 ............................ TGGGTGGCCGACATCGTTGCGTCGAACTCGTA 122153 28 100.0 32 ............................ GCATGCTGTCCGGCCTGTTGATCGGCCCGCTG 122093 28 100.0 32 ............................ GCAACGCCGGCCGAAGACCAGACCATCACCGA 122033 28 100.0 32 ............................ TTCACCGTCACCCAGTCCTGGGTGGCGTAGAC 121973 28 100.0 32 ............................ TTGGCAGCTGTAGCCAGAGCCGGATGCGAAGC 121913 28 100.0 32 ............................ AGAGCGCTCTGGTGGACGGCTGGGTACGACGA 121853 28 100.0 32 ............................ CGTATCAGCGGGCCGCCAATGAAACCGTCGAG 121793 28 100.0 32 ............................ AGCGGCAAGTCGATTTCGCCGGCCGCTACCTT 121733 28 100.0 32 ............................ AACGCCCAGCGCCAGCGGGAGAAACGCCAGCG 121673 28 100.0 32 ............................ AGTTCGGGACACTGCTCCAGCAGCAGGACGCA 121613 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 19 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TGCGGCATCGCTCATCACAGGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCTTCTAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCAGGGCT # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGACCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //