Array 1 15959-12204 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCA01000011.1 Pseudoalteromonas ruthenica strain S3257 S3257_S36_L001_R1_001__paired__contig_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 15958 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 15898 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 15838 28 100.0 32 ............................ TGCTGGCCTTTCTTACTGTGAACGCTATTTTT 15778 28 100.0 32 ............................ CGTTGTCTCGCCCAGGTGCTCGCTAAATGCGT 15718 28 100.0 32 ............................ GCGCCAAAAGGTGGCCGCATGATGCAGCCAAT 15658 28 100.0 32 ............................ GGTTTCAGAAATCATAGGAAGATTAGTTGATG 15598 28 100.0 32 ............................ TTCACCAAGTGCACAAAAGTCTGGTATGGCCA 15538 28 100.0 32 ............................ TTCTGCGTGCCGTAGACGATGCCTAGTGCGTT 15478 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 15418 28 100.0 32 ............................ TGTTCGCCCTGATAACGTGCCAGTCACTTCTG 15358 28 100.0 32 ............................ TTCTGAATCTTTATCTAATCAACGCAATAAGA 15298 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 15238 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 15178 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 15118 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 15058 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 14998 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 14938 28 100.0 32 ............................ AGCCTTCGCGCTCGTAGACATCAATGTGACCC 14878 28 100.0 32 ............................ AAGATGAAAATAATCACGAAGGCCACGACTCC 14818 28 100.0 32 ............................ ATGAAAAAAGTAAACATCTTAAAAAGCAAACT 14758 28 100.0 32 ............................ AACGGCGTAAGCTCCAATGCAAAATGACATAA 14698 28 100.0 32 ............................ TTGACGGTATTATCGACCAGTTATCAGGTTCC 14638 28 100.0 32 ............................ TGTCTATCAACGTTATTCGATAGCCAATTGAC 14578 28 100.0 32 ............................ AATAGCCTTACGTGTACGAAGCGACAGCGGCA 14518 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 14458 28 100.0 32 ............................ AATGGTATCTCAGCCTTGAATTTACCTCTCGA 14398 28 100.0 32 ............................ ACTCAAACGATGTGATAATAGCTTTGCATGTT 14338 28 100.0 32 ............................ TGCAAATAATGCTCTTCTTCACCACTGCGAAG 14278 28 100.0 32 ............................ ACCCCTAGACCCCGAAGAAAACTGCTATGAAA 14218 28 96.4 32 .................T.......... AAAAGGCTGGCGTTATTTCGCTTACGGAGTCG 14158 28 100.0 32 ............................ TGAATATGACATCCCTGTTGTTGTCGGAGAAA 14098 28 100.0 32 ............................ TGTGCGCTGGTCGGTCCCGCAGTTATCGCAGA 14038 28 100.0 33 ............................ AGTCATAACCTTCTTCAAGTAGCAACTGAAACT 13977 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 13917 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 13857 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 13797 28 100.0 32 ............................ AGCAAGCAAAGCGGGTATTGCAAGTAAAGCAG 13737 28 100.0 32 ............................ TTATCGTTGCTTTCTGCGCGGGCCTGGTTGAT 13677 28 100.0 32 ............................ TATAAAGAAGCTTACAACGCGGTGCTGTGTGC 13617 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 13557 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 13497 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 13437 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 13377 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 13317 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 13257 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 13197 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 13137 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 13078 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 13018 28 100.0 32 ............................ ATCCGGCGGAATCAGCGGTAGCGGGGGCCATG 12958 28 100.0 32 ............................ AAGTTAAGGGCGGTTCGCTGGTGTCTGAGTCG 12898 28 96.4 32 .............T.............. GGTGCGAAATACATCACCGACAGCCTGGGCTA 12838 28 100.0 32 ............................ CGATTCTAATGGCGATGGTGTTTTAGATAATC 12778 28 100.0 32 ............................ TTTGGAGTCGTATGGTCGTATCAGCGCTTTTA 12718 28 100.0 32 ............................ TGGCAAATTCTTTAAACGGCTTTTGCTGAGAT 12658 28 100.0 32 ............................ AAACCGTCAGGCAACGCAAAATAAAGAAGTTA 12598 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 12538 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 12478 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 12418 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 12358 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 12298 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 12231 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 63 28 99.3 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : TGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //