Array 1 338562-336275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050267.1 Salinivibrio costicola strain M318 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 338561 29 100.0 32 ............................. CAGCGACCGACCATGTATCAAGTGGTTGATGG 338500 29 100.0 32 ............................. CCGTTAGTGTATGAGTGGTTGTGATCTCAGTG 338439 29 100.0 32 ............................. GGATGGATTTCGCTGATTTTTTAGCGGCTTTC 338378 29 100.0 32 ............................. GCAGCTTAGAAATTGTAGTCGTTTTTAAACAT 338317 29 100.0 32 ............................. CTATCTGAGGTGATGCAGGCTGGAACGGAACA 338256 29 100.0 32 ............................. GTCGCAGTGTATTTCGCGTTTTCCTTGTCCTT 338195 29 100.0 32 ............................. CCGGATGAGGCGGAAAAGTTTGCCGAGAAGTT 338134 29 100.0 32 ............................. TCTTTTCTCCGTACCACTTTATGTGCCTATGT 338073 29 100.0 32 ............................. GAAACTTTTTTTCTGTAGAATGCTGATCTATT 338012 29 100.0 32 ............................. TCGAGCAGCGGGATGGTTTAGATCTATAAACT 337951 29 100.0 32 ............................. TTAATTGCCGAGTTTGACTCAAAAACCAAGAG 337890 29 100.0 32 ............................. TATGCTAGAATTTGCCCTGACACGTTTACGCC 337829 29 100.0 32 ............................. TATTACACCCTATCAGGTACGCCCGACTTATC 337768 29 100.0 32 ............................. ATATGTTCTTTGCGGATATTGCGGCTCGGGAT 337707 29 100.0 33 ............................. GGGTTTAGTGAGAATCCTAGCGATGTAAGAGTC 337645 29 100.0 32 ............................. TGACTACTTTTATCTCTATGATGATAGCGAAA 337584 29 100.0 32 ............................. CAGGATGGTTACCGTCAGTGATGTACTTGCCA 337523 29 100.0 32 ............................. TCTTTCGACGTCAGAGCGCCGATTTTAGACCA 337462 29 100.0 32 ............................. CCACAGCTCACAGGCAGCACGCCAGCCGAAAC 337401 29 100.0 32 ............................. TTGCAGGATGCTATCGAGATTAAAGACGGCCT 337340 29 100.0 32 ............................. GGTGAGCAAGAGAAAATCATCGATAAGAACAT 337279 29 100.0 32 ............................. CATAAAGAAGAATGATAGAAGCCCCTTGCGGG 337218 29 100.0 32 ............................. TGGCCGATTGGTTAGCGGAATGAATGTTTACC 337157 29 100.0 32 ............................. GAAAATCTTGACGTGGTATATCATCAAAAGCT 337096 29 100.0 32 ............................. TATCTGGTGCTATCTGACGACTACCATATCCA 337035 29 100.0 32 ............................. TTTTATACTGTGTATAATCATCGCTGTATTGA 336974 29 100.0 32 ............................. AACAGCGACCAAAACACTTTGGAAAAGCGGAT 336913 29 100.0 32 ............................. GCATTATTTACTCCTGATAAGGGATTAATAGA 336852 29 100.0 32 ............................. GGTACGTAGGTGTACGTAACGATGCCAGCTTA 336791 29 100.0 32 ............................. CCTACGTTGGTCCCGAGCGTAACAACCACGGT 336730 29 100.0 32 ............................. TATCTGGAGGAGCAATGAAACGACTAATCGAA 336669 29 100.0 32 ............................. ATTAAGATTGAACGTAAAGGTGATTTAGCAAT 336608 29 100.0 32 ............................. CATACGTCCACACGTACGGCGCTGCTTCCGGT 336547 29 100.0 32 ............................. GATTGAGCCAAGCGGAGCTGGCCGCGCTGGCA 336486 29 96.6 32 ....................A........ GTGTCAGTATTACGGTTTGTGACTGCGGTGTC 336425 29 100.0 32 ............................. TTCCTCAGTAGGAGTATTCTCCGGCACGCGAT 336364 29 100.0 32 ............................. CCCCCCTTTAAACTGAGTTCACTGTTTAGGAG 336303 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 38 29 99.9 32 GTGTTCCCCGTGCCCACGGGGATGAACCG # Left flank : CGATGATCGAAGACGTATTAGCGGCCGGTGATATTACACCACCTGAACCGCCTCATGACGCTCAACCACCAGCTATACCTGAGCCAAAATCAATTGGTGATAGTGGCCATAGGAGCGGCTAGATAATGAGTATGCTTGTTGTCGTCACCGAAGCCGTACCGCCAAGATTACGTGGCAGACTTGCTGTCTGGTTGCTCGAAGTTCGCGCTGGTGTTTATGTGGGCGATGTAACACGTCGCGTGCGGGAAATGATTTGGGAGCAGGTAACAGAACTTGCTGACTCCGGCAACGTGGTGATGTGTTGGGCGATGAATAATGAATCAGGTTTTGACTTTCAAACTTATGGTGAAAACCGTCGGGAGCCTGTCGATTTAGATGGTTTAAGGTTGGTGGTATTCAAACCGAGTGATGAGGATAAATAAGCCCAGTTTGCTCTTTAAAAAGTTGGTGGAAAAATTCAGGTCGATTTTTGTTATATAAAACAGTAATATCCGGTTAGA # Right flank : ACAGTGCCGAAGATACGGAACCCTATGATGGAGGTGTCGATTTAGATGATTGGTGATTGCAGTACTGCAATCTCTCTTGCGATTACTTAGTTAGTGCATCTGCGTGGCGTTGTTTCCTAAATCATTGAACTTATCATCCGAGCTGCGATCAGATTATTAAAGCCTCAAAACAGGTCTCAGATGATGAGCAAAGCCAAGTACAAAATTAGCAACTGGAAGCAATACAACCAGGCATTAGTTAACCGTGGTTCGATTACCTTTTGGGTTGATGACGCCGCTATCCAGACTTGGCACTGCAAAGAGCATCATGGAAAACGAGACAGAGGCTTTACGTTTACCGATGGTGCCATTGAAACAGCACTGATGGTTAAAGGTATTTTCAAGCACCCTCTTCGCGCCCTTCAAGGCTTTCTCGACTCGATATTTGGTTTGATGGACGTACCGCTAAAATCTCCGTCATACAGTTGTATCAGTAAACGGGCGAAGACGGTTGAAGTTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGCCCACGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTGCCCACGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1538782-1537432 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050266.1 Salinivibrio costicola strain M318 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1538781 28 100.0 33 ............................ GAAACACCCCAGAAGCAAGCGCCGCCGCCGTCA 1538720 28 100.0 32 ............................ GAGTAAATAATCCGCAAAATCACGAGCTCGCT 1538660 28 100.0 32 ............................ TAGAGGCATGGAAAGCGCCCCGATTGATTGCC 1538600 28 100.0 32 ............................ TAACTACACGGGAGTTTCTGCGCTAACATACA 1538540 28 100.0 32 ............................ GTCAATCGACAAGTCTGCCACGTTTGATTGTA 1538480 28 100.0 32 ............................ TGACACGCGATAGTGACGCTTGCGGCGTGAAT 1538420 28 100.0 32 ............................ ATTCGACGGCAGCCAAGACCATTCGTAAACTT 1538360 28 100.0 32 ............................ ACACTGGCTTCGACGTTGGCGATTTCAGATAG 1538300 28 100.0 32 ............................ ACCAAAGGTTGTGGGTTTGCGCCAGCTGGAAC 1538240 28 100.0 32 ............................ AACTTGGCGATACCAGCGAGAGTCCATTGCTT 1538180 28 100.0 32 ............................ TGCTGGTCGTTAGTCTTCATGGTTTAGGCCCT 1538120 28 100.0 32 ............................ AAGGGAGTTCTTTTAATGGCAAAGGTAATTTC 1538060 28 100.0 33 ............................ AAGAAGCGCGGCCTCAAGGGTGAGGCTTATGAT 1537999 28 100.0 32 ............................ ACAAATCTCCACGTTCATCAATAACTACTGAG 1537939 28 100.0 32 ............................ ATCCCGACTAGATCAAAGCCTTTCTTGCTAGA 1537879 28 100.0 32 ............................ TTGCGGTTTTTGTTCGCCGACGTAGTAAGCTC 1537819 28 100.0 32 ............................ TTTAGCCATTCGCCACCCCCACTATGCGTACG 1537759 28 100.0 32 ............................ ACTATTGAACAGGAATTCAATGATGTTATGGA 1537699 28 100.0 32 ............................ TACATATAGTGCTGGCGTTGCTGACGCTGATT 1537639 28 100.0 32 ............................ AACCCAAGCACCAACTGTATGCGCACCCATTG 1537579 28 100.0 32 ............................ ACCGAGCAATCCGGCTTGTTGGTATGCGCCTT 1537519 28 100.0 32 ............................ AGCAGAAAGAGAAAACGCAGACCTGGGACTCA 1537459 28 92.9 0 .........................GC. | ========== ====== ====== ====== ============================ ================================= ================== 23 28 99.7 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TTGTCGTGGGGTCCGTCGCTCATAACGTTTTACCTTACCAAGTTTGACTTCTTCAGATGCAATCAGCGCTTCTTGCACAAAGCTATAGGGTAAATCAGGGTTCTCAGTCATGATTTTCCCAATTTTTGCCCAGTACTCAATTTGCTTGGGCACGGAGCGCATTTCAGCTTCTGCATGCACTTTTACATCTGACACAAACTCATCATCTAACCGCACACTGGTTGGCATGATTCACTACCTCATTTATAAATCTTCACTGGTTAATATGCGACAAAATGTCGCGTCTTGCAACATGTTTAGAACTGGCACATCTGGCGTGACTTAAGACGGCTCTGCATCAACATATGTGATAAGTTGATACCCTTGCGACCCTTCTTTTTTGGCCGTTCAAAAATAAACAATAAATACAAAGCGTTATGGAAAGCGATTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATA # Right flank : CGTTATTTGTCGTAGACGCCGACAAACTCTGACACTCTCGTACATTCTTACGACAGCCTTTTTGTGACTTGCTGATTATAGTCAGCCTTCTTTAACGCGTTTTATGCGACACAATGAAGTGGGTATGGCTGTGATGAATATCAGTAAACAACATCGAATGAGCCTTGTGGAGTGGGCTGAAAGAATTTATCCGAACAGCAAAGGATGGCGTGTAGTGAGCAAAAACTGGCGTTTTTGCGCGTTGGGTTCGGCATTTCCAACCATTATGGAACGCATGATTGAGGTCTTTAACGAGCCCTATTTGGCGCCGGTATTGGCTGACTATCCAGAAGTGATCACTAAACCGCTTAAACCTTACCTCAATGTCTCACTGAGCATGCCTGAGCGGGTAGCAATGCTGCATGACCATTATCGTTTTATGGCGAATACCTTTGGCCGTCATTGCAGCACCATTTTCTCAGTCGCGGGTCTGCCTCTTGTCAGCTTTACCGCCAATAATG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 1548948-1546938 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050266.1 Salinivibrio costicola strain M318 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1548947 28 100.0 33 ............................ TTTCCAAGTTTTCGCGGATCACTGGCAATGTAT 1548886 28 100.0 32 ............................ CCGACACGGGTAGCCAATATTGTTGTTTGGAT 1548826 28 100.0 33 ............................ AGAAAACCTGATGAGTCCATCAAACTTCATTCC 1548765 28 100.0 32 ............................ AATCAGCTGCAGGTTTTCTACGTTCAGGAAAA 1548705 28 100.0 32 ............................ AAGACATTGAACACATGATGGATGCCGGAGCG 1548645 28 100.0 32 ............................ AATTGCCGCAAAGCGTGCCGTTGATGCGAAGC 1548585 28 100.0 32 ............................ AGCGTATTTTTATCAAACAGTCTCGGTGGACC 1548525 28 100.0 32 ............................ AGTGCCTCCACGTACTCACACATGTCGATGCC 1548465 28 100.0 32 ............................ ACTTGCTCTGTCTGCTCGTTAGTGAAGCCAAA 1548405 28 100.0 32 ............................ GATGAGAGCAAAGAAGAAAACGAGAGCAAGGA 1548345 28 100.0 32 ............................ GCGTCGCCTCAGTCGCCGCGACTTATACAGCG 1548285 28 100.0 32 ............................ TTACCCAGATACAGTACGTGCGGTTCTTAGGT 1548225 28 100.0 32 ............................ ATAAACTGGCCTCGCTGACGACGGATTTGCGT 1548165 28 100.0 32 ............................ TACGCCGGTGAGTTCACTGGCGTAGTGCAACT 1548105 28 100.0 32 ............................ CTAGCGAAAGCGGATTATTCGAAGACTCGTAA 1548045 28 100.0 32 ............................ TTGAGGTGAAAACATGCTAAAAACTATCATCA 1547985 28 100.0 32 ............................ AAATCAAAAGCATTCAAAGCAGCATCTGATTC 1547925 28 96.4 32 ..........A................. ATATAATGCAAGCGAGCCAAGGCGCTGAGTGC 1547865 28 96.4 32 ..........A................. TTCCACCAACACGTTAATCGGGCCGATGTTTT 1547805 28 96.4 32 ..........A................. CGGACAAGCCTTTGTATGTGGTTGTCCAGACC 1547745 28 96.4 32 ..........A................. AGTATTAACTGGCTTTGATGCTGTAGAAAACG 1547685 28 96.4 32 ..........A................. CATAGTTTCTCTAAAACATTCAGTGATAATAT 1547625 28 96.4 32 ..........A................. AACTGCGATATGCCTAGCTTGCACTACCTTAC 1547565 28 92.9 32 C.........A................. TGCACGTAGATTATTTTTTCGTAAAAGCTAGA 1547505 28 96.4 32 ..........A................. TTCCTGCCGCTGCGTCGATTGGCGATTTCGTC 1547445 28 96.4 32 ..........A................. CACTCGTTATACGCAGACTCGCTGACGCCTTT 1547385 28 96.4 32 ..........A................. CACTAGTTTTATTACGCGCTTAGTCGTGAATA 1547325 28 96.4 32 ..........A................. TTTCATCGGCATTAGCACATCACCTTCATGTC 1547265 28 96.4 32 .............C.............. TGACCGTCGTTACTCCCGTGAATACCAAATTG 1547205 28 100.0 32 ............................ AAATCGGGCATTTTGGTTCGCGTGGCTGGTCT 1547145 28 100.0 32 ............................ TGAAGAAACTCTGATGTCTTTATCGATACATC 1547085 28 96.4 32 ..........T................. ATTTGCAACACGGTTTCGTCCACGGTGATTTC 1547025 28 96.4 32 .............C.............. TCGACATAATGTTCCGACATACATATCGGCCA 1546965 28 82.1 0 .............C..........AGTG | ========== ====== ====== ====== ============================ ================================= ================== 34 28 97.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACTGGACGATCTGTTACCCCGACCGTATGTTGCCGCGATTAGCACCGCTTTATGATGTGGTCTTTACGCAGCCTTATATTGAATATGACAACATTGCGTTGAAAATGGCGAAAAGTAAGCGTTGGTATGATATTGGTTTGAGCCATTTTGAACGCTGGTCGCAAGATGTAGGTGTGCCGTGGCAAATGATAAAACCGCATCTGTTGGATACGATCAACCTGGCACGAGATATCTGGCCAAATCAACTTGCGCAATTACCGATGCTAACGGAGCACAAAGCGATGCTACGTGATCATTGGAAAGCCCTGCACGAGGACTTTACCATCGATTCGTGAGCCAATCTAACGGAGAGCTAATCGGCACCTTCTTACCCTTATTTTTTAGCCACTTAAAAATAAACAATAAATACAGCTAGTTACGGAATCCCTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACAGCCTGTTGTCACTGACGATTATTACGTTATTCTATT # Right flank : TATCAATAAGGGTCACCGTTAAATGGTTGACCTATATTCATTTTTTAACCATGAAAACCATGTTAAATTACTGATTTGTACGAAAGAGTAGCCATACTTTGCCTAGCTTGTCGCCTGACAAAATGGAGTGTTGGAATGCGAAGAAAAACGAAGCGCAAAGACTTTGCAGCGCTTAATGAGGAGTTAGCCTCTCTGAAGCAGAAAGCGCAAAAGAGTGATGAAAATCGCTGGGAAAGCTACGAATGCCAGCTTGTCACTCCCATGTATGGCGGCGGTGTGCTCGCTGGAGAAATTGATCAAGCCATGCCTATTCGCGCGAGTGCGATTCGTGGTCATTTGCGCTTTTGGTGGCGTATCGCGTGTGGTCCGGACAACCCTAAAGAACTACGCAGCGCGGAAGAAGCCATTTGGGGTGGTATTGATGACCATGGAGCAAAGGCAAGCAAGGTGAGTATTTATGTTGACTGTCCCAAGAATAGGTTGGAGACAATACCAACAAA # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 1551318-1550870 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050266.1 Salinivibrio costicola strain M318 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1551317 28 100.0 32 ............................ GTCCTCGTTCGCCGGACATTCAGCCACCCACA 1551257 28 100.0 32 ............................ TACGTGTTCAACAAAGACAAAATCGAAATCAA 1551197 28 100.0 32 ............................ ATTCTACTGCTACAACAGGGTCGTGATGCCGT 1551137 28 100.0 32 ............................ ACTCGACGCTTGCGACATAGCTGGCGCACCTT 1551077 28 100.0 32 ............................ TGCGGTTTGTGTCTCAGTGCCGCCGCCAGTGA 1551017 28 100.0 32 ............................ TTTTGCGTAATATTTTGCTGCTACGCCAGCAA 1550957 28 100.0 32 ............................ ATCAGCTTTTCGATGTGCGATTCACCGGCGTT 1550897 28 89.3 0 .........................GTG | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TGCAAGACTATGCCTACTTCAAACGTTGGAACTACAAATCGCCGCAGCGACTGTATAAAAACCTCGACCGGCGTGCGGCCGCGATTGCCAGCAAAAATGGTTACGATGAGGAGGAGGTAAAGCGTCGTTTGTTGGAAAACATCAAAACGGACGACAAACGCTGGTCGCTACCTTTTATTCAAGTCACCAGCCTGTCGAGCCAAAAACGAGTAGAGCAGCCAAATACCGAGTTTGCTTTGTATATCGAACGGGAACTGACCAAACAGCCGCCAAGCAACGGCCAACCATTCACCTGTTATGGGCTAAGCCGACGCGAACCCGATCAGCAATCTGCGGTGCCGTGTTTTTGAGGGGGAAACCCCTCTTTACCGCTTCTTTTTGGGCTCTTTAAAAATAAACTTTAAATACAGCTAGTTACGGCAGGCCGTTTTTAACAAGGGTAAAAGGCCATTTTTATCCTAACGGCCTGTTGTAACAGATGATTGTTAGGTTATTCTATT # Right flank : ACACAAGCGCCGCTACGGTGTTGGATATATAAAAACTGTCAATGGGCGCCTGTCACGATTAGCGCTTATATCAACCGATGTAAATGCACCATGCTAGTCTTGATGTTGTGACTTATTAAACAATGAATACGTTGTAATTTCTTAAAGAACAACTAATATGTTGTATGTAAGCCATAATACAATATTAAAGTTGTTTGGGGATGTGATGGTGTCACTAAAAGATATAGCGCGCGCATTGCAAGCCCGTCGTAAATCACTTGGGCTAGAGCAGTCTGACATGTACATGCGTATTGGCATGAAACAACAGCAGTATCAGCGAGTAGAGGCGGGGAGTGATGTTCGGTTATCGACTTTGCTGCGCGTGCTTGAAGGGCTCGACCTGACATTAACGCTCGAGCCCAAAGCATCTCAAATGGTTGATGAGTCGGTAAACCTCGATCGTTATAAAGATGATGATAACGACGATCTCGACTTTTGGTTAGGGACGGAGCATAGCGATG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 1561867-1560879 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050266.1 Salinivibrio costicola strain M318 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 1561866 28 100.0 32 ............................ CATCACATCGCTGGCCATGATGAAGAACTGGT 1561806 28 100.0 32 ............................ TTGGTCGCCCTGATGGGCATTGAACAAGCGAT 1561746 28 100.0 32 ............................ TTAAAAACTTGGGGCGTTTCGGCTTCGTCTCT 1561686 28 100.0 32 ............................ TTAAAAAACTTGGGGCGTTTCGGCTTCGTCTC 1561626 28 100.0 32 ............................ TACAGCTGTTCCGTGATGCTGAATCCAAGCTT 1561566 28 100.0 32 ............................ AAAATCTGACATTAATATAGAATCTGTCGATT 1561506 28 100.0 32 ............................ GCTATGAAGTGGGGCGTGTCATTAGACGGCAT 1561446 28 100.0 32 ............................ TTACACTATCTTATCGCTAATGCCCGCAGGAA 1561386 28 100.0 32 ............................ TACTGCTGGTTTACGCCGCGCGCACGACCGCC 1561326 28 100.0 32 ............................ TCGAAAGCTCAAAGCGCTGTGGAAGCGCTACG 1561266 28 100.0 32 ............................ AAAGCTACCCACTTCAACCTGAGGTTAGACTT 1561206 28 96.4 32 .............C.............. ATCGGCGCTGTCCGCGTATTTAATCCATGTGT 1561146 28 96.4 32 .............C.............. TTTTTAAAAGAGAGGAGCAAAGGAAGTTAGTC 1561086 28 100.0 32 ............................ GGTTACTTCAAACATTTGCCTCTCCTGTGTGT 1561026 28 100.0 32 ............................ TCCATGTCTGTATCAATCGTTTCGAATATCAC 1560966 28 96.4 32 .............C.............. ATTGCGTCGAATGCTTCCTTTTCTTCCGGCGA 1560906 28 92.9 0 .............C............C. | ========== ====== ====== ====== ============================ ================================ ================== 17 28 98.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TCTGCGATTGGCCTTACCGTTAGACGATTTTACTTTATATTGGCTTTTACAATGACTACGGCCCACAGACGCCGAACGCAGCGCTTTGTGCTTGGTTTTACGGCCGTTTGTACGTTCACGCCATACCTTAAAGCTGCGCGGCTTTAACTCACGGCGCATCAGCGCAATAACATCATCTTGTCGCAGGCCATAGAGTGTTTCAATGGCTTCAAAAGGAGTCCTGTCTTCCCACGCCATTTCTATAACTCGATCAATCTCTCCCGGTTGCTCGTTCAAAGCCATATCTGTCTCCTTATGCTGGTGGCAAATAATACGGGTAGCGCAGGAAAAACCGATCAGCGTGTTCTTTCTGACCAATCAATGCTTTTACCCTTATTTTTGGGATATTTAAAAATAAACCATAAATACAGTTAGTTACGAAAGGCCCTTTTTAACAAGGGTAAAAGACGATTTTTATCCTAACAGCCTGTTGTATCGAACGATTGTTAGGTTATTCTATT # Right flank : TTGAAATAGTTGCTTTTTTGATGCCAGTTCATTGTTGGTGGGTCGTGGCATAGAGGAAGTAGGGGGATGGTTCAATATCAACATAAGCGCATGACTGGTATTGACCATACACGTTAATTTGGCGCATGTTTGTAGCCAAAGTTAAGCTTGCAATTGCATGCTTTTGCATAGTTAAACAGCGTTTTAACGGTTGGATTGCCTTTCCCTTTTTCAAGTCGAGAAATATTGCCTTCTTTCGTCCCCATACGTTCTGCAACCTGCTGTTGAGTTAGCCCAGCCTGCTTACGCATACTGAGTAACATATCGATCAATTCAAACTCAGGCGTCAATTCATCGTATGCTTGTTTCACGTCTGGGTTTTGTAATGCTCTCGCTTTTAATGCCTGTAAGCTATTCATTTTTCACCTCTCTCATACGCCCTGTTGCCAACGCTAAGTCTTTCTTTGGTGTCTTTTGGCTTTTCTTCACAAATGCATGAAGGACATAGATGTTGGGACCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //