Array 1 848686-848161 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEU01000034.1 Bacteroides fragilis str. 3783N1-6 gbf3783N16.contig.33, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 848685 35 100.0 36 ................................... AGGATAAGTGGCAATATGTACTTCCGGCAAGTTGAG 848614 35 100.0 38 ................................... TTTTTCTAAGATACCCGTTATGATTCTTAAGTCATTGA 848541 35 100.0 32 ................................... ACGAATGCCACGAGGGCACATTTTACTAAATT 848474 35 100.0 34 ................................... GCGCGTTCAAACATTTCCGGCTGCGGTTTGTTGT 848405 35 100.0 36 ................................... AATTGTGAGGGTATCATGTACAGGGTACCAGATGGT 848334 35 100.0 34 ................................... AATGAATTGTACGGTCCCTTTTTTCATTTTTTTC 848265 35 100.0 36 ................................... CAATGCCCAGAAATACTGCAAACTTTCCTTATTAGC 848194 33 82.9 0 ................A.....A..T--....C.. | T [848163] ========== ====== ====== ====== =================================== ====================================== ================== 8 35 97.9 35 ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Left flank : TTATATATCAACCTATACGAAAAAAGATAATTAAAACCGTCGAAATAGTCTAAACCTCTTGCGAAAATCAGAATTTGTTTAATTCATTGATTTTCTGCTTATTCTTTTAAATGAAAAATAATATATAATGTATAAAAGCTACGAAAGAACTAGCTTTTTTGTATATTAGTAAATCATTTGCGAAAAAAAACAAATAAGCAATTCGTTCTTTGACATAATACACTTATTATCTGATAATTATAAATATAAGATTAATCTTATTTTCGAAATAGGCTATAATATAACAAATGAAGCAGGCATTTGCGAATAATGAATCGATCATATCAAAGTGATAATCAATTAAATATCTCTATATTCTACAAATTATTTATTTAAATTACAGAAAAAAAGAGTACATTTGCGAAAATCAGTTCAACACTTCATCTATCTAACTGAATAATAAGTTATTATATATTTATACAGATAGAATACATATTTTATAATAATCTGATTATCAATAT # Right flank : ATTAAATAGAATAAGGGGAGAAGTTCAGACATAACGGCTTGGATAAGATCGTCATGGACTTCGGTATTGCTTTTAACATTGGGAAAATGATCAATAAGCAGGAAAAGAAGAAGAGAGGCAGAACTAATTTATTGGTAACTATTTTAATAAGCTGTGGAATAGCTTACCAAAAATACACAAAGGCGATAATACTACGGGGCTGTCCAAAAAGCAAAGTGCCCCCCAAAAGTCAGATAGCCCCTTTTACCATTGTTTATTTCGGTGAAAAGCCTCATATTACCGTTGTGAAAAATTAACAGTAATAGTTAAGATAGTATTTAGAGAGTTAACCTCCAGCCAAAATGTTCTTTTCCGGTTCGTTTATCGGAAAAAATATCTCCCAACCATCTTGTTCGTGTTGTAAGTTACATTGTAGATGCTTTGGATATTAGTTACCTGCTCTCGGCTTATAATGGAGGAGGCACCAACAGCTATCATCCCCGTATGATACTCAAGGTCCT # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTAGATGTATTCCAGTATAATAAGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.60,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-86.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 995-2038 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEU01000053.1 Bacteroides fragilis str. 3783N1-6 gbf3783N16.contig.52, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 995 47 95.7 30 ...A......A.................................... GATTCGAAGATATGCAAATGTAGCAAGTAT 1072 47 100.0 30 ............................................... TTTCAACATTGATAACATTCTCTTTATCTT 1149 47 100.0 30 ............................................... AAACCGTTCAAATATCTACGTAACTGAGTG 1226 47 100.0 30 ............................................... TTGCCGTGCAAGCTCGTTTATTTCTCCTAT 1303 47 100.0 29 ............................................... TTAGAAGCGGCTAATTGAACATTGCACTT 1379 47 100.0 30 ............................................... ATGAACCGGAGCAACTTTCGCACCTGTACC 1456 47 100.0 30 ............................................... GGTAATTTGTTATATGTTCGTGGAATTTCG 1533 47 100.0 30 ............................................... TGATAGCTTTGTTTCTTGCAAGATTAACTA 1610 47 100.0 29 ............................................... TCTCGCAGCACATAAGAAGCCATTTGCAG 1686 47 100.0 29 ............................................... ACAGGAGACTGTTCTCTTAATACACCAGA 1762 47 100.0 29 ............................................... CTAACCTTCTTCCCGCCTCGAATATTCTA 1838 47 100.0 30 ............................................... CATTTCTCCCACACGTATCTATATCCAATA 1915 47 100.0 30 ............................................... AGACCGTGCAGCCTACAACAACACTAAGTC 1992 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 14 47 99.7 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGTTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGGATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTTACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //