Array 1 3151-3582 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPN01000048.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig48_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 3151 36 94.4 30 ..........T.......T................. ATCTTTATCAGTGATTGTATAAAATGCTTT 3217 36 100.0 30 .................................... GTTTGTTCTTCTGCTAAAAGTTTGTGGAAT 3283 36 88.9 30 ........C.T..T.........T............ TAACAGATGCAATACACAATATCCCAGATT 3349 36 100.0 30 .................................... AAATTTATTTGTTAACTCAGCATTTGTATA 3415 36 100.0 30 .................................... GTTTGTTCTTCTGCTAAAAGTTTGTGGAAT 3481 36 94.4 30 ........C....T...................... AATTGGAATCCGAAAAGCGTTAGAAAATGC 3547 36 88.9 0 ..................T.......A.TT...... | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 95.2 30 GTCATAGTTCCATGAAAGCCATTGCTGTACTATGAT # Left flank : TACAAGAGGCACAACTTGGTGAATTTCTGTTTAATGGTTCTCAAAAAAGTGGCTATGTTAGTAAAGGTTCACCAGACTTTTTCCTAGCACTACAACGTGAAGCTTCTAACATTTCTACTGGAAAGGCTTTTTATATTAATAAGGGGAAAGTTATAGAAGTAAAAATTCTTGGTGCAGATCAAGGAATAGGAATTATCGGTCATTTTAAAGGATTAGATAAAGGTAAGTTTATGACAGCAACATATAATAATAGTGAAGGCATATGGAATTTCTCGACATACCAGACCGATCTTGAAACAGGGAACGCAAAAGAAATTGATTCAAAAAAGCTTCCCCTTGAAGAAGGCAAAGAGTATTTAAAGAAAAATTTTGATATGGCATTTTAAAAAAGAAAAACCAAAAATATGTGCTCAATGTTTAAAATAATTAGGTTTGATGATGCAGGCTTTTTTACAAAACCATATAACTCTAAAGGTTCTGGTGCAAAGATAAAATAAAAC # Right flank : TACGCATTCAAAAAAGCCTGTAATATCAACGCTTACAGGCTTTTTGTTTTTTATTTTTTAACCTATATAGAGTGAGTTATCCTACATTTTGTTGTTTTTCATAAAAAAGGCCTTAAATATCTCTACTTATTATCTAGTATTCTAGACGCAAAGAGACAAAAAAACACGGTAAACAAATTAATATTGCTTACCGTGTTAAAATTTCACTGATTGTTATCTATTAAAAATTCTACGTGTTTCTTGTTTCACTAACCTTAAATCACCTAAAACACCAACCTCATATTTTTCTAAATTCTCAATTGTTTTAAGACTATAACGATATTCATTCTGTTTTGATGGCTTATTTACATCTTTAAAATTAAGACGGTCAGAATCGATATCGAGAGTACCAAAGTATAAAAAACGATCTTCATTACCTTTTACAAGACGTACTAAATCATAAGGGTATAAACTAGATTTAAACGTAAAGCTGTTATCTAGTGTTAGCCATTGCTCATAAC # Questionable array : NO Score: 2.87 # Score Detail : 1:0, 2:0, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATAGTTCCATGAAAGCCATTGCTGTACTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.30,-1.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 19707-20530 **** Predicted by CRISPRDetect 2.4 *** >NZ_NVPN01000048.1 Bacillus pseudomycoides strain AFS098856 AFS098856_104_D1_Contig48_140523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 19707 32 100.0 35 ................................ TAAACCACTTATTAATGAAATCATTGCTTGGCTAG 19774 32 100.0 34 ................................ TAAAGCCACATTGTGTTCTTCCTCCGTTATGATC 19840 32 100.0 33 ................................ TCATTAGCTCCTCACGAGCCACCTCAATAAGTG 19905 32 100.0 34 ................................ TTTTGTACTCTTTAGCGTACTCTTCATCGTAATC 19971 32 100.0 34 ................................ TTCTGTTTTCGTTGAGGAGTCAAATGCATGTGCT 20037 32 100.0 33 ................................ GCTTGACGCGTGCCGATACACCCCTGAATTTCG 20102 32 100.0 35 ................................ TTCAATACTTTTAGGCTCAGAACTATCTGCAATGA 20169 32 100.0 35 ................................ ATGAGTGATTATGTTAAGTATCTCAACAAATTTAG 20236 32 100.0 34 ................................ ATAGAACATTACCCCTTATTCCTATCAGGAGTTC 20302 32 100.0 33 ................................ TTTAGAAAAGCTTTCCCAAAAGATACACATTAA 20367 32 100.0 34 ................................ TTATACTCTCCTTCGTACCAATACCAAGCCTTTT 20433 32 100.0 34 ................................ TCAAAGTGGTTGTGCTTCACCTCTACCCGGTAGG 20499 32 93.8 0 .......................A....C... | ========== ====== ====== ====== ================================ =================================== ================== 13 32 99.5 34 GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTTTATGGAAGTAGGTGTAACATTTGCTAGTATTAATTACGTATGATGTAAGCACTATTAGCGGTGCAGGACAAAAAAGACTGCGAAAAGTTTCAAAAGTATGTCAAAATCATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTAGATGCAACTCAATTTGCTACTTTAAAGATGGAACTAGTTAAAATTATTGATGAAAGTGAGGATAGTCTCAGATTTTATCAGTTAGGTAACAACTATAAAAGTAAGGTCGAACATATCGGTGTAAAAGAATCAATTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAACGTATAGCATACATAAAATCTCTAGTACATTCGCACCTAAATTTTCATAATTTATGATTAAAATTTATGATTTTCTATACAAATTTCTTTATCAAATAAAAAACTTGCATACTTTTGAACAGAATTAACGTATTTGTGTATTATTTTGAACACAAATCGCA # Right flank : TAAGGTAAAATGAATCATATTTCGACTTTCACTTTCCTCTTTTTATCCTTTACTTTTATGCAAAAGAGATATAAAAAGAAGCTTAACCCCTTATGTATCAATGGATAGAAGCTTCTTTTTTTTGCAAGAATATCCTTTGCAACAAGATGCAATTATATTTCAGCGTATTCGCATCTTGTAGCTATTAGTATGTATGCTATATTCCACAAAATAATTACAAAAAATCTCTTATTCTCCTTATCTATTTCTATTCTATGCACCTTAAAGAAGACGTATGCACCATTCGAGGTGAACGTGTATAAATTAAATTGAAAGTGTCCAAAATAAAAGTTAAATAGGGTAGAAGAAAGGAAGACACTTTCATGAAGGGAAATAAAAGAAATCGTACAAAATTGGGGAAATGGTTAGACCATAACGGCATAGAACAACAAGAATTAGAACAAGAAACTGGTGTTAGTCGTAATACAATTTCAAGGTTATGTAACAATAAATCACACACA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTCTTATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTCATATAGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //