Array 1 61-628 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFQ01000051.1 Pseudomonas aeruginosa strain VET-23 NODE_30_length_63448_cov_19.8336_ID_59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61 28 100.0 32 ............................ GTGGCACGACCGTGACCTGGGATGTGCCGACA 121 28 100.0 32 ............................ AAGGGCAACGCTGGCCGTCACGGCCGCCGAAA 181 28 100.0 32 ............................ TGTGCCGGGCAGGCTGGCCAGCGCCTCATTGA 241 28 100.0 32 ............................ GTCGGCCTGGAGTTTCGTCGGGCGTACATCAG 301 28 96.4 32 .................T.......... CAAGCGGACGGTGACACGGACTATCAGACCGG 361 28 100.0 32 ............................ ATCTCAGCGCCGCCTGTTCTGCCGGCCGCATC 421 28 100.0 32 ............................ TACGGGCAGTCACGGCGAAAGGCACTCAGCGA 481 28 100.0 32 ............................ TCGCGCAATGATTTCAGCCGCGGAGCGCATAG 541 28 100.0 32 ............................ ATAGATAACACGTGTGACCGCGACCACTACCG 601 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 99.6 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCTTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAATAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38050-38976 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFQ01000006.1 Pseudomonas aeruginosa strain VET-23 NODE_44_length_47932_cov_19.9466_ID_87, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38050 28 100.0 32 ............................ GCCAGCGTACTGGGTGGCGATCTGTGCCACGT 38110 28 100.0 32 ............................ ACCCAGGACGCCATCCGGCGCATGAGCGAACG 38170 28 100.0 32 ............................ TATCCGATGAACGTCCGCATCCCCGCGGCTGT 38230 28 100.0 32 ............................ TTGCCCGCTCAGCGCTCAGGAACGACTGACCC 38290 28 100.0 32 ............................ AGACGATCCGCGCATTGACGACGGGCGGGCCG 38350 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATTAGT 38410 28 100.0 32 ............................ GTACCGGGGTGCTGCCAACCATACGAGGCGTT 38470 28 100.0 32 ............................ ATGACCTGGGCCCGGACCACCTCCAGCCCCTC 38530 28 100.0 32 ............................ CACATGTGCGCTTCGGCGATGGTGTCGGCCAG 38590 28 100.0 32 ............................ AGCCGATGGCCCGCAGTAGTACCCCGATCAGT 38650 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 38710 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 38771 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 38831 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 38890 27 92.9 32 .....................-..A... TGTCGCGAAGTTCATAAGCGGGCTTCGGGCGA 38949 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 98.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47873-47505 **** Predicted by CRISPRDetect 2.4 *** >NZ_RAFQ01000006.1 Pseudomonas aeruginosa strain VET-23 NODE_44_length_47932_cov_19.9466_ID_87, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47872 28 100.0 32 ............................ TGGCTGCGCGAACTCGCCAAGGACATCAGTCA 47812 28 100.0 32 ............................ ACATGCGTAGCGTGCAACACCGCTCGCGACGC 47752 28 100.0 32 ............................ GCGCAGTAGTGCGTCTCGCGTGTGATGCCGTG 47692 28 100.0 32 ............................ TTTGCCTGTGCTACGCCCAGGCTGCGAGTCAG 47632 28 85.7 8 ...................C..GT.G.. CCGCACGT CCTT [47607] Deletion [47597] 47592 28 100.0 32 ............................ ATCCGGTACGTCGTTTCGACGAGCAACGTTGC 47532 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 28 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCT # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.39, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //