Array 1 13004-12680 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000029.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold29_cov26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 13003 36 97.2 36 .........C.......................... GCAACAATGTTACCTTCACTTTGGAAGCGAAGCAGA 12931 36 100.0 31 .................................... CGGAAAGCACAACATTTTTAATGCTTTGGTG 12864 36 100.0 38 .................................... ACTTATTTTCGTGATTGCTTGTGGCAATAAAAATAAGT 12790 36 97.2 39 ....................A............... AAAAAAGAAGAGTCACCTTTTCAAGGAATTAGAGAAAAG 12715 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 5 36 98.9 36 CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Left flank : GTCAACCTTTACAAGAAATAGAAATTCCTCAACATTTACTCTTTCCTCAACATTATAATGATGGTCGGATTTGTGCTTTTCTGCGTGTGGTAGACCAATGGGTAAAAGGTATTGAAACCAAGCAGGAAACTACACCATCTTTGTATGAGGGTGTGTATTCTCAATTATTAATGGATTTATCTCATCAATCTAATGAGTTAAGAACCTGGGTGGATGTACCAAGTTTAGATTCATTTTTAACAAATATTACGCCGTGTTGACAATTTTAGGTGAGATAATATACCTTTTATGAAGTGCGTTGAAATTTATCGACACCACTCGTCCGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATAGCTTGCACCGTAAAGGTTTCAGCCTTTAAATGGCATTACTTGTTGAGAATTTTCTGGGTTTTATTGAGAATTTAAAAAGTGGTGTCGAAATGGGGGTCTGAAAGCCTTACTACGCAAAGTTTCCAGAAGTGAACT # Right flank : TGCCAATTACCTGGAATTAAAAATGTTATAACATAAGTTATAATGACATTAGCACCCCTAAAAATAATGCGGTGTCTTCACTCAAGAATTATCTTATGGCTGATAAAATTTATCCTATCAATCCGGCAAAAATTGGTAATCAAGATGGGTTTCGTCTCCCTCGTTCTTTTTTTAAAGACCATCCCCATTTAGCAAATGCTTCAGGTTACATAGAAGTATTATCAGATAACACATTTTTGGTAAAATTAGAGCCGGAAAATGTTAATAATCATGATGAAGATGAAGGGATAATGTTAAGCCTCTTTTTAGATTTTCTCGTCAAAGATGCTGTTCAAAATCCTAAACAATTAGTTATGTATACTCAGGAAATAAGTCAAGAAATAGATGATTTAGTTGCTGATGTAATCTTAGATTAGATTCAGAAATCAGGAACAAGGTAAATATTCTTTATTCACCAATACAAATTAGCAATTAATGGCTGAATTTACTTGTAATGGCTG # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAAACCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 50184-51655 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000033.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold33_cov27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 50184 37 100.0 40 ..................................... CAAAAATTGTAGGTATTGCGCCTAAATAATTTCCGATAAA 50261 37 100.0 41 ..................................... GATGAAAACACTTTGGAGAATTATTTATGCAAACAGTAGAA 50339 37 100.0 42 ..................................... AATTGCCTTGATATCACCGAATTTAATGCTGTAGCGCCCCTT 50418 37 100.0 37 ..................................... GATTCCGGAGGCACACCAAGCGGGGGCTAATTCATTG 50492 37 100.0 41 ..................................... ATTTTTTATTCCCTATTAACAACAAGGCGGAAAGATTGTAA 50570 37 100.0 33 ..................................... TTAGCTCAAGAAGAAGAAACAATAAATTCAAAT 50640 37 100.0 39 ..................................... AAAGATATGTGGTTGATGTGGCATTGGGATTTTGATAAT 50716 37 100.0 44 ..................................... AGCTATTTTTTTGAGTTGTCTTTCAAATGCGTTGTTTATAGGAG 50797 37 100.0 41 ..................................... TCATTTGTAAAGTGACCTGCTAATTTAGCAGCGTGTAGCAT 50875 37 100.0 42 ..................................... ATTGGCTACTTCAGATAAGATAGCACTTGGTGAATTATCAAA 50954 37 100.0 37 ..................................... GTGGAATCTTTTGGCGGATTCTTCTTGGAAAGCTTCT 51028 37 100.0 35 ..................................... GGATACCCTGAATTTGAGCATACTACATTAAACCT 51100 37 100.0 37 ..................................... TTTCTTGGCTTCATTACTGGCATCTGGGCAATTACAA 51174 37 100.0 42 ..................................... GCCGTCGCACCAGGAACACCAATAATTTTCAGAACATCCCCA 51253 37 100.0 39 ..................................... CAAATATTTCCAACAAATCAGTATAAAATCCCTGAATAG 51329 37 100.0 36 ..................................... GAGTGTTAGCTTCGCTGAAGGCTCTTTACCAATTAA 51402 37 94.6 35 ..........C.....................A.... GCTGCATGAAAAAATAGCCCAAGAATCAGCAGAAT 51474 37 91.9 36 .........TC..T....................... TTTCACTGCCATTTTTTTGGCATCGACTTCTAGCGC 51547 37 91.9 35 .........TC..T....................... GTGCTGAACTCAAAAAACTTCTTAAATTAGTGCTT 51619 37 91.9 0 .........TC..T....................... | ========== ====== ====== ====== ===================================== ============================================ ================== 20 37 98.5 39 ATTGCAATTCTAAATAATCCCTATTAGGGATTGAAAC # Left flank : GGAATTCACGAAATTAACAGTACCAACATTGCTGGTGGCGGGGGAATATGACATTATTATTCCCGCAGAAATGGGACGACAAGCAGCAGCACTAAATGAAAAAGTTGAATTTGCAGTGATTCCTAATACTGCCCATTTTCCCATGTTGGAAGACCCAGAAACTTATTTGGCAAGGATACGAGAGTTTTTAAATGATTGACAATTGATATAGCGGTATTTTTTGACACTGCCCGGTCTAAAGACACAGAGATTCTGAAGCACTCCATTGGTTGATGCGCGGATGGGTGGGTGTAAAAATTTTGGTTGATTAAAAAATGGCTGAAATCAAATCTACATCAGGCTTTGGTTGATTTTCTGCTCTTGAACCACCCGCGCACTTTACCCAGTAAGGGTTTCAGCCGTTTTTCTTCTTGACACGATTCCTGAAATGGACTATCATGATCTCATCCGCGCAACTGTACCTTGAAAACTACATATATAAAGGGTTTCAGCCTACCGCT # Right flank : CATTGCTAATACAGCTAATAAAATAGTGTTAATGTTTTAAACTATCGTTAATTTCTCGTTCCCATACTCTGTATGGAAATGAATGTTAAAAAGTTCTGCCTTTTGTTTTAAACTGGAGTCAAAGACTCCTGATAGCATTTCCAGTCTGGAGACTGGGAACGAGATAATATCAGTAAAAAATAACTTTTAAATACTATCAGGATCTACACCCAAAGCCCTCAATCTTTCTGCTAATAATTGAGCGCGTTGTTCAGCTTTTTTCGCTCTTTCATCACCAGTCATCAAAACATTACCATCTTGATCACACCAACGTAACCAAGTATCATTTATTCCTTCAAACTCTCCCTCCCATAAAGTTAAACCTAAACCAATTTCTTCTAACCAATGATTTGTAGTTTCTACATAAGTACCCAAGCAAAATTAATTGTACATATTGATTGAAAACAAAAATGTCTGTATTCCTTACCTATTCCCTATTCCCTCTTCCCTATTACCTCTCC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTCTAAATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : NA // Array 1 25962-26509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000037.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold37_cov29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 25962 36 100.0 36 .................................... CGTCATCACTAACTGCATCGCAGGAAAACCTGAATC 26034 36 100.0 43 .................................... TTCTTCTGTTGGGGTTGTCCTTACATCCCCGCAGGAAAAGGAA 26113 36 100.0 36 .................................... GCCTAAAACCGTTCTCAGAGACATTTAATAAACCAC 26185 36 100.0 38 .................................... GGCAGACGTAATCTGCCTGGGTGGTTTCTATAAAAACT 26259 36 100.0 34 .................................... GTAATCGGTGCAATATAGGTGTTTTGATCGCCAG 26329 36 94.4 37 ............A..T.................... CCAAACTGACCACCGTAGGTTTTTACGCCTACTACAC 26402 36 91.7 36 ...........AA..T.................... TTCAAGCCATGCAAGCACGCATCGTAAGGGCGTTTT 26474 36 91.7 0 ...........AA..T.................... | ========== ====== ====== ====== ==================================== =========================================== ================== 8 36 97.2 37 CTTTACAAACCCGCTCCCCCGAAAGGGGATGGAAAC # Left flank : AACATATTTTACCAATTAGCTGCAACAGATGGAGACTCCAGCACTGCACCTGTCACCTTTTTACTCAACCCTGGTGACACCTTTGGTTTTCGAGTTGCAACCGTAGATAATTTAGGTGGTCTAGGAATATTTACTGTTCAAAATTTCAACGTCCAACCAGTAGCAGTACCTTTTCAATCTTCGCCAGTAATCGGTTTAGCAGTGTTAGGTTTAAATGGATTGTATCGGCAGTGGCGGAAACGATGTTAGGTTTAGTTACATTATCGGCTTGACAATTTCAGTAAAATCATCTATTTTAATGTGGTGTGTTCAAATTTATCGACACACCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTAAGGTGTGTCGATTGCTTGCACCATAAGGCTTTCAGGCTGCGATTTTGACCATTTCTAGAAATTTTTTTTCCATTTTCCAGAGGTGTGTCGATTAGGGTATCTGAAACCCTTGCTCTGTAAGGTTTCCAGAAGTGAACT # Right flank : CCCAATACCCTAATTACCAGCAATTCTCATTTTGAAAAAAATAAAATGAAATTCTCTTAATTTAAGTGTAAAACTTGTATCAAATTATCATTTTTTGGTAGATAGTTATCATCCGATGCTGGAGATAGATAGGGTTTTAAAAATCTTGAAAAATTCAGACATGAAGAATTGATTTCAACTTCGCACCAATTAACTTCGAGACTTGAGTCTTCATCTTTTAAGGGAACTCTAGAAGTTTGACACTATGGAATAGTTTTAATATCTGCTAGTCCAAACCTAAATGTAGCTTGATAGCATCATTGACCAAATGGATCAACTCTTGACTTAAACACCCTACCACATCTCCTAAAATGCGCTGTTTAGAAATTGTCCGTATTTGTTGCGCTTGTACCTTAGAAGTTTTAGACAAACCCGAATCTTCTGGATTTAATAAAACTTCAAAAGGATAAACACGACTCATATTAGATGTAATTGGTAAAATCGTCACCGTAGTAGAGGCA # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCGCTCCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTACAAACCAACTTCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 5499-3830 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000038.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold38_cov31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 5498 37 100.0 38 ..................................... GCCAATAATAAACCCGCCAGAACCGCCTGGTTTTTGAA 5423 37 100.0 34 ..................................... TATATTTTATATAAAATGTACCCAGTGACTATCA 5352 37 100.0 35 ..................................... GTTGTTGGTTGTTGGTATGGTTGGATTAGTCTTCA 5280 37 100.0 32 ..................................... GCTTGCCCTGTTGCACGAAGAAATGTGCAATT 5211 37 100.0 35 ..................................... GTTTACTGCGACAATGGCGCGTATATCTTAAGTTC 5139 37 100.0 35 ..................................... TTTTCACTTTATATCGCAAAACCAAGACAGAGGTA 5067 37 100.0 39 ..................................... TTTCATGATCACTTGCTAGGGACTCCATCAACGATGCAG 4991 37 100.0 39 ..................................... CCTCCTGTTTGGTTAAGTAAGTCATGAATCCTGCCTCAT 4915 37 100.0 35 ..................................... ATCAGGTGCATAATCTGAATAACATTCTGCTGTTG 4843 37 100.0 40 ..................................... GCTAAGGATTTAACTTGAGCATAGGAGTAGGCGATCTCAT 4766 37 100.0 37 ..................................... ACGATTATTCGGAAGAGGTAAATAGTATATTCTCTGA 4692 37 100.0 38 ..................................... ATTGCTAACATTCAGGGCATAGAGTGTGCATCAGTAAC 4617 37 100.0 42 ..................................... GGGTTGAATTTTTGAATGACTCTTTTTGAGAAAATATCCGCA 4538 37 100.0 36 ..................................... CCAAGGATAATAACAAACGACGCTCACTTTTTAACT 4465 37 100.0 29 ..................................... ATGGTAAAACAAAATCTGGTAGAATAGTT Deletion [4400] 4399 37 100.0 40 ..................................... CATTTTATAGGAAGATACTTGACGATAAAATAGATATAAA 4322 37 100.0 39 ..................................... ACATTCGGTTTACAAAGCAAGTATTTGTCAACATTAAGA 4246 37 100.0 46 ..................................... TTTGATAGCCAGACTATTTTCTTCTTTGGTAGAAAAGCGATCGCTC 4163 37 100.0 35 ..................................... TTCACGAATTTAGTAGCTGGTCAAAACTACATCAA 4091 37 100.0 38 ..................................... TCTAGAAACTATTTAACGACTCTTTCTAGTGGTCATAG 4016 37 100.0 41 ..................................... CCTGCAAAACCAAAGAAGGGGTACCGGATGCGGGTAAACAA 3938 37 100.0 35 ..................................... ATGAGCGTTTAGGTGGTGGGATTTGGACTATAGAA 3866 37 94.6 0 ..............................C.....A | ========== ====== ====== ====== ===================================== ============================================== ================== 23 37 99.8 37 ATTGCAATTTCACCTAATCCCTATTAGGGATTGAAAC # Left flank : TTGATCGACTGCTAAGGCTACGTTCTCATCTAACCAGAGAATTTTTAAGATAAATTTCGACAATCGTACCTCCGGGACAAATCCGGCTATAACTTACTAAGTTTGCGATCCCTTATTGTAACTTAATATCTGTCCAATTGACTAATGAGTTTGAATATCTGGCAGGAGGAAGGTGACAGGTGACAGGTGACAGGTGACAGGTGACAGGTGACAGGTGACAGGTGAAAGAAATTTGTATGGAAGCGTCTGGATCTATTTTGGATTTTGAATTTTTGCGCGAGAGGGTGGGTGTTAAAAAACCATTCGCTGAAAAAAGCCCTGAATTCTTTTGCTGGCAAGACTTTCCAGGATTTTCTGCTGTTGACCCACTCGCGCACCTTACACAGCAAGGGTTTTGGCGTTTTTCGCTCTTGACACAATTTCTGAAATGGACTATGATTAGATCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCAGGATGCCGCT # Right flank : ATCATTTACCATTTGGACGTTGAATAATAGTTTCCACCACCCGTTTTTTAACCTGCGGATCAATTCCCACCAAGCGCACATACTCACCACTAAATTCAGCCAAACAAGATTCTAAAGTAGAAACAACATCAGATTCAGCATCAGTATTAATAGTACCGCAACTTTGCCAAGAACCAGTGCGAAAACGACGTTCATCTATATGTTCAATGCCGATTTTATAACCTTGAGACAAAATTTTGCGAACTTGGGCTTGGATATCTAAAGTTAAATGTGTATTAGATAGTTTTTCCTGGGGAACAGTAGCTTCATGAATTGGTGTTTGTACAACAGCAGCAGCAGGTTGAGAAATTGTACTCCGATGTAAACGATTATATTCATCAACCAAATGAGAAGTTTCCACCCGTTTTTGTTCACCCACCATGAATTTAGCAGACTCAATTAAATGAGATAAGCTGAAATCAGGCTTTTTAAACACTGGTGGTCCATCGGCGCTATTAACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACCTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 8960-9659 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000041.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold41_cov27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 8960 36 100.0 38 .................................... TCTCGTGGTTTTCCAAAAGCAAGAGTTATTAAAAAAAA 9034 36 100.0 39 .................................... TCACAGGAGCCAGGCATGGTGTTATAGGAACTAGTTATT 9109 36 100.0 33 .................................... TAAAGAAATACTACAATACATTTGATTCCCTCC 9178 36 100.0 44 .................................... GCCCCCTAAATTGGGTCCGCAATGGAAGGTTTCACTTTGGGCAC 9258 36 100.0 38 .................................... CCCTCAGTAATTACTTTGGGATTAGCGTTTTGAACGGA 9332 36 97.2 35 ...............T.................... AATTGTTGAGCCGCACCTTTAGGATTTGATTCAAT 9403 36 94.4 37 .............T.T.................... CTTGGGGGCTGCGGGCGGGGCATAATCCACCCGACTC 9476 36 94.4 38 .............T.T.................... TTAAACCCTACTTTTTCGCAAACTGCGGCAATAGTATC 9550 36 97.2 38 ...............G.................... CCTCCAGCACCGCCAGCATTATTGTTGTAGCTGCAATT 9624 36 94.4 0 ...............T...................T | ========== ====== ====== ====== ==================================== ============================================ ================== 10 36 97.8 38 CTTTACAAACCAACTCCCCCGAAAGGGGATGGAAAC # Left flank : CTGGTGATAGTACAGATCCTGTATATGGTCAATTGTTACGGGAAGCAATTCAAAAAGGTTTAGAAGTTTTACCCTGTCGCTTTGATATTTCCCCCGAAGGTATCCGTTATTTAGGTTTAGCAGAATTGAAAATTTAATTTAGCAACCAGGTGACAGGTGACAGGTGACAGGTGACAGTGTGAAAAGTCTTTTTTTATCTGGGTTTTATTATCCCTAACACGGGCGATTGCTATATCAGCAGTCAGCGGTCAAACCGTAAAGAAATTTTTGACACTTTCAGTAGAATTGTGTATCATTGTGCCAGTGAGTTGAAATTTTTCGACACACCTCGCCCGAACCTTGAAAACCCTATAACTTCGTTGAAGTGTGTCGATGGCTGACACCGTAAGGATTTCAGGCGACAAAATCAGCCACTTTCTGGAAAATTTTTGCAGTTTTTTAGAGGTGTGTCGATTGGGGTATCTGAAACCCTTGCTCAGTAAGGTTTCCAGAAGTGAACT # Right flank : TAGTAAGGGTTGAGCATTACCAAACCCCTACCTAAAGTCATTCCACAACCAACTTCCTCTGACGTAAATGTTAATATCAATAAAAAGATTGTGTAATCAAATCGGATTACTATATGTCAGAAACTATAGTGACTGAACCTAGCGTTAAACTGCCACCTACCCAGGCAGAACTTCCTTGTGATGACAGTATTCCAATCGAGACACAAAGACATAAATTCCAAATGGATCTTTTAATTGATACCATTCAGCCCTGGCTAGATCAAAGGACTGATGGATATGTAGGGGGCAATATGTTTGTCTACTACAGTTTAGCTCAATTAAAAAATCAAAATTTTCGTGGCCCTGATTTTTTTGCAGTCTTGGATGTCCCCAAAACAGAAAGACTTTCCTGGGTAGTTTGGGAAGAAGGAAAATCACCAGATGTAGTCATTGAATTACTTTCAGAAAGCACAGCAAAAAATGATAAAAATGAAAAAAAACTGATTTATCAAAATCAAATG # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCAACTCCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTACAAACCAATTTCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [13,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 29442-32064 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000054.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold54_cov28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 29442 37 100.0 35 ..................................... ACCGCAAACAGTATTTAATTTGCATTGCTCAAGAC 29514 37 100.0 34 ..................................... TTTCGGAACTGATAATTTTATAGAACCTTCAAAA 29585 37 100.0 32 ..................................... ATTACTACTTGGTGCTGACCGAAAAGTATGAC 29654 37 100.0 39 ..................................... TCAAAATTCAAAAAATAGAAATTACCAAAATCTTCAAAC 29730 37 100.0 35 ..................................... CACTAATGTTTGTTCAGTAGGTTGATCATGGCTTG 29802 37 100.0 35 ..................................... TATTACGCTGGTACTAGAGAGAATAGTACAGAATC 29874 37 100.0 40 ..................................... TTGACAACGATATTCTCTACAAGAAACCAGTACGCGATGG 29951 37 100.0 38 ..................................... GTTTTTAGAAACTTAGATTTTACTGGACACCTAGCACC 30026 37 100.0 45 ..................................... TAGCTAAGAATATAGAGATTGAAGCTTATGCTGCGTTGAAATTTC 30108 37 100.0 42 ..................................... CTTGATGGCAAAACAGGATTTCGGAGGATATGGCCATTTCAC 30187 37 100.0 35 ..................................... CTATAGCCTGGATGTACAGTATCCATGCCGATGAG 30259 37 100.0 34 ..................................... TTGTCTTCGGACGGAGGATGAAAATTACTTTTGA 30330 37 100.0 36 ..................................... GAAATTTGAAGTAAGGGTAGAGGGTAATAAAGATGC 30403 37 100.0 37 ..................................... TAAAAGTGGGGATCTATTAATTAAAATTCTTCCCAAG 30477 37 100.0 36 ..................................... CCCCTGATAGTTGCATTGCAAGTATATTTAATAATA 30550 37 100.0 35 ..................................... CGCACCCGGTTCTGCTACTTTGCGCCGCCGAATGG 30622 37 100.0 40 ..................................... TACCTGCTGAATTTATAGATATAAAAGCTAATTTTTTAAA 30699 37 100.0 39 ..................................... TCTACCTGGTGAGAAACCCACTGAACAGAATTTGCAAGA 30775 37 100.0 42 ..................................... ATCTTGAAAGTTTGATGATTGATTGCTTTTTATTTTGATGCT 30854 37 100.0 34 ..................................... TTCCTACAATCATTGCAAGTATAGGAGGAGAAGG 30925 37 100.0 35 ..................................... AAATCATCCAACCCTAATCTATGGCAATAAAAAAG 30997 37 100.0 40 ..................................... ATATTTGGCGGCGTGTAGTGTGCCGTATTCAGCCTTGAGT 31074 37 100.0 34 ..................................... GTACTATCAAGTTCAACGCAGGTGCAAAATGCAC 31145 37 100.0 38 ..................................... CATCAATTGCTGGAGTTTGCGAACCATCAACGACAGAA 31220 37 100.0 35 ..................................... TCCCCCTTTTCGATGTTTACTATCTCTAAATCAGG 31292 37 100.0 37 ..................................... TTTTGCACCGTTGCAGCAGAGCCGAAGCCATAGCCTT 31366 37 100.0 33 ..................................... TTGTTTTTAAGTCTTTTAAATACTGCTGTCCTT 31436 37 100.0 35 ..................................... AATAGGTTATGAACCAATACCATTTAAAAAACCAG 31508 37 100.0 39 ..................................... TCCTTTAAATTGCGTAGTGTTTCTCCATAGTCCTCTCTC 31584 37 100.0 38 ..................................... AGATCAGCGGAAACCAACCGGCTGATTCAAATTCAGAA 31659 37 100.0 39 ..................................... ATGGTTCTTTGCAGTTTGCTTGCTATGATAGTTGCCGTT 31735 37 100.0 37 ..................................... CTGATAATGTTTGAATGTTTAATGAAGACTGCGCCAA 31809 37 100.0 37 ..................................... AATTTATTGACCTTAAAACGGGTGTTTCTCAAAAAAC 31883 37 100.0 34 ..................................... GTAAATTTTCCCGTTAGCGAGAATTTCGACTGGA 31954 37 100.0 37 ..................................... CTTGGGGGACTCCGAATGGTTGGATATCAGTGGGATG 32028 37 91.9 0 ...........A.......T........C........ | ========== ====== ====== ====== ===================================== ============================================= ================== 36 37 99.8 37 GTTGAAATTTCCATTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGACGGACTAAAATTCACAATCTCCTCAAGTCCTATGGCCAATGGGTGCAGTATAGTATTTTTGAGTGTGAGTTGACTGATACTCAGTATGCTAAACTGCGATCGCGTCTTAATAAACTCATTAAGTCTGATACCGATAGCATCCGTTTCTATTTCCTTTGTGCTTGCTGTTTTGGTAAAGTGGAAAGAATCGGTGGTGAACAACCCCGCGATCATACTGTTTTCTTCGCTTGATGCGCGGATGGGTGGGTGTAAAAATTTCAGGTCAACAAAAAATGGCTGGAATCTTCTCTACATCAGCTTTTGATGGATTTTATCAAAGTTACCCACCCGCGCACCTTACACCGTAAGGGTTTCAGCAATTTTCGCTCTTGACACGATCTCTGAAATCGACTATGATTATGACATCCGCGCAACTGAACCTTGAAAACTATATATACTAAGGGTTTCAAAATGCCGCA # Right flank : CTTGTCTAATACTGAAATTGACACTCCCCTGCCTAAAGGCGAGGGGATTCTTGGTTCACAGACTCGCCATTAGACGACAGGTTGACACCAATCGCCCAAGAGGGCAAATCTCCCCAAGCGTAGCTTCCGGCGTGTCCCGCCGTAGTTAATCCCAGCTTTAGGATATTTATACTGGCGTTGATATCTCTATCTTCAACGAACCCACAATGAGTACAAACATGGGTTCTAGTTGATAGAGATTTTTGTACTTTCTGGCCACAATTAGAACAATTTTGAGAAGTGTTATGAGGAGGAACTGCAACAGTTACCTTTCCATATTTATGCCCAAAATATTCTAACCATTGCCTAAAAGTAGACCAACCAGCATCAGATATTGATTTAGCTAGATGTCGGTTTCTTAGCATGCCTTTCACATTTAAGTCTTCATAAGCTACCAAATCGTGAGATTGGATGACGGAATATGCTAATCTCTGGCAATATTCTTTTCGCTGCCTACTTAC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 30805-31058 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000068.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold68_cov25, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 30805 36 100.0 37 .................................... ATTTTTCGCCGACTTTTTTCTTGAACAACCCTATCAA 30878 36 97.2 37 ...........................C........ AGCAAGCCACTGATGAAAACCAGCCCAATGATCTGGG 30951 36 100.0 36 .................................... TTAACAGAGTAGGACTCTGGTTTTTGGTCGGCTCGG 31023 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 4 36 99.3 37 CTTTCCAAAACCACTTCCCCGCAAGGGGATGGAAAC # Left flank : ACACCTGTGAAGGATAAGGTTTAATTGTCTGAATCAGGATTTCCAGGATTAAAGGATTTACAGGATAAAAACTAGTATTTGATCACCAATTATATTATGTCCGGCTAATTACTGATAATAAACTTTTCCTGTTACCTGTTCCCTGCCCAAACAGATATGATAACTATTCAAACGGACATGATATTACCTATTACCAGATTCAACTAGATGACTAACAACTTAAATTATTAATTATTTGGTCAAAGTATTGTGGTATAAGCGTTTCAGGCTATTTGACAATTTCAGCAAGATAGTATATTCTGTATAAAATAAATTTCATCGACGCACTTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGACCTGTGTCGATGCCTTACGCAGTAAGCATTTCAGACGACAAATTTCATGAATTTGAGAAACTTTTTTCTCGTTTTTCAGAGGTGTGTCGATTGGGGTATTTCAAACCCTTGCCCTGTAAGGTTTTCAGAAGTGAACT # Right flank : CATAAATTGTTGACTTATTTCCCAATACAGAATCTACTAAAAATCCGATCTAAAACAGATTCAGTCACCTCTTCTCCGGTAATTTCTCCCAACGCATAAATCGCTCCTCTTAAATCAATTGTCCAAAAATCTAAAGGTAACTGCTCGATAATTGTTTTCTGCACTTGTTCCAAATCAATCTTTGCTTTTGTTAAAGCTGCGGCTTGTCTCTGATTAATCGCTAAATCCATATCAGCAGCTTGCACTTTTCCTGCTTGGACTATTTCTAAAATAGCAGTTTCTAAACCATCAATTCCTTGATTTTGTGCCGCTGCGGTTTTGACAACTTGCTGAATACTTGTTGGATATTTCAAATTTAGAGACGATTCATGAATCATCTCTACAAGGTCAATTTTATTAATTACCAAAATCACTGGACGATGTTTTACCTGTTCATAAATTTCCTGATCTGCATCCGTCCAACCTGCGGCAGCATCAATAGTAAATAACACTAAATCAGC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAAAACCACTTCCCCGCAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.68 Confidence: LOW] # Array family : NA // Array 1 36953-37863 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000057.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold57_cov27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 36953 35 97.1 39 ........................A.......... TCGTTTCTATAACGCCATCGGGTATGGCGGAGTGGATGC 37027 35 100.0 37 ................................... AACATTCAACGAATCAGTTATGCACACTTTAAGAAAA 37099 35 100.0 37 ................................... GGTTTAATGACGCTGACGATGAGCAGCGTTATAAAGA 37171 35 100.0 38 ................................... TCAATGGGTTGGAGTACGCCATCCGTGGTGCGCAAACG 37244 35 100.0 39 ................................... CAGAGCAAGAAACTCGCTTTCAAAAGGGTAAAAACTACT 37318 35 100.0 37 ................................... ACTCTAGTGGTACCCAAGGTACCGATTACCTGATAAA 37390 35 100.0 38 ................................... ATGATTATATCGTGAACTTGGATAAAATGCATAGTATT 37463 35 100.0 37 ................................... CACAGTTGTAACAGATCAAAACATTATTTTATTTTTC 37535 35 100.0 38 ................................... GATTTTTTTTATTGGCTCCGCCTCCGCGCAGCAGAAGG 37608 35 100.0 35 ................................... ACCAATTGTATTGCAGCATTCGGCTCCATAATAAA 37678 35 100.0 39 ................................... TTGGCATGCTCGTCTCAACTGCTTTAATCGTTTGGACTG 37752 35 100.0 42 ................................... TCAGATGAACAGCATAAACAACAAGGAAAAAAAGTCCAAGAG 37829 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 13 35 99.8 38 GTTTCCATCCCCGTGAGGGGAAGTTGATGAAAAAG # Left flank : ACCCAACTCAACAAGTTTGTCGTCCTTCCCAGTCCAGTTGGGGTTTTAAGGGTTTCCATGAATATTGGTTGAATGACACTAATGCTTGGATTTATCCCCATTTACATAAAGCTGCGGAACGGATGATTGAAATCTCTAAGCTAGAACCAGAGGATGAGTTGCAATGGAAGGCTTTGAATCAAGCAGCGAGAGAGTTATTATTGGCACAATCTTCTGACTGGGCGTTTATTATGCGGACAGGAACAATGGTTCCCTATGCAGTGAGAAGGACGCGATCGCACCTGATGCGATTTAATAAATTATATGAAGATGTGAAAGTGGGTAAGGTTGATAGTGGTTGGTTGGAAAAAGTGGAATTAATGGATAATATTTTCCCCAACATCAACTATCGGGTCTATCGTCCGTTGTAGTTTCCTCACAATCAGGATTTCCAGGATTTAAGGATTTACAGGATATGAATTTTTTCCAAAACTCTTGTTAATTCTTTCATCCTGTATTTA # Right flank : GGCCACTCATCTAGAAGGCTTATCACAATTGAGTTTGAAACGGGTCAATCTGAGGGGGTCTTTTTTGAGGCTAAATAATTGATAAATACTCTCAATAAGACCGAATCTGACACACTTCAAACGCTTACTCAGCAAGCTATCTGAGGGGGTCAACGGAAGAATAAGGGTTTCAGACGTTGCTTGACCCCCTCAGATGCTTATCAATCAATGACAAACTCATCAGTTTATCAAATGATTGAGAGTAGATTTAGAAACACTAACGTCAAGTTAAGCTTATTAATTTTTCATGGTTCAGCAAATCTAGTGACTAGTTTATGAAAACCTACGAAAAAAATCAAGGTGAAATAAAAAGTATAAAATTACACCAAAAAAATTTCTGCTTTTTAGCCCAACCCTGTTAAATTTTCAAGGTTTAATATTTTAATGGAAAGTACATTATAGATTTTGAAAAAATGCAACTTTTTTTTGAGGAGCATTGTGACACAAAGAGATATGCTTTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCGTGAGGGGAAGTTGATGAAAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 5307-4977 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000077.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold77_cov28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 5306 36 100.0 39 .................................... GCGGAGGTGTTTCCGATGGATTGAGTCTGATACGCTTGC 5231 36 100.0 40 .................................... GCTAACCAGCCTGAGGATTTGCCGTGTCCATTTTTCTCGG 5155 36 100.0 37 .................................... TCACAAACTTTAACCTGAAAAAAGTTTCCATAAACGG 5082 36 100.0 34 .................................... GTTGCACGCATTTCCAAAAATGGCTTTTTGCCAA 5012 36 97.2 0 ...............T.................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 99.4 38 CTTTACAAACACACTCCCCCGAAAGGGGATGGAAAC # Left flank : TTTTGATTTTAGAAGCAAAAAATTAACTACATCGTCAGCATTCAGCCGTCAGCTATCAGCAGTCAGCTATGTACCTGAAATATTGAAATACAAACAGTGAAAATCAACAGATGCAGATAACATTCCTGAAATTACAATTTCTAAATCTTTGTTATTGCTGTAAAAAGCTGATTACTGATGACTGATAGCTGAATACTTACACTACATCATCCCTCTTTATCTGCGTTCATCTGCGTTCATCTGCGTTTGCAAAAATAAAACTTTTTGCTTGACAAATCCCTGTAAATAACGTACTTTTAGCAATTAAGTAACAAACTTTCGACACACCTCCGCCGAACCTTGAAAACCGCATAACTTCGTTGACCTGTGTCGATGCCTTATCCAGTATTGGTTTCAGGCTGTGAAATTGGTGAATTTGAGAAGTTTTTTTATCACTTTTCCGAGGTGTGTCGATTAGGGTATCTGAAACCCTTACGCAGTAATGTTTCCAGAAGTGAACT # Right flank : TGAAAGCAACATCTGAAATTGAATTATATTTTTAGGGTTTAGCACTGCTAAACCCCTACAACCAATTTATATGTATCCAGGTGAATTGCTGTCACCTGTCACCTGTCACCTGTCACCTAAATAACTCAATAAGGATCAGAATCAAACCTTCCCCGCTTCACACTCCTGAGATAATAACCTTTGGACGGAATTTTATTTAAATCAAAAGTTTCACCTCTAGGAACTCGCCAAATTTTATAGTCGTAATATGTCAATGGTTTTCCCGGTTCACAAACTTCCGGGGGATGATCTCCAAACACGAAATATACTGCTCCTCTCCCCATCACTTTAGCAATTCCATATTTATCCACCAGTAAAGAAGTTTCCTCACTAATTGCAATTCCTAACGCAGTTGCAGATACGCCATCTTGAATTTGTCTAGCAATAAAAACCATAATTCTCCCCATTCTTTTTCTTTCATCAAAATGGGTATCAATGATGGTTTTTCGCAAATATTTCCA # Questionable array : NO Score: 3.03 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACACACTCCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 10475-9421 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000127.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold127_cov25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 10474 36 100.0 35 .................................... TTTATAGCACGAACCTGATTCATTGTAACGCCCTG 10403 36 100.0 37 .................................... GATAAAGCATACGGCATGGTATGCGATCGTTTTTTTT 10330 36 100.0 35 .................................... AAAATGGTTGTTGTTGTCCCTGGGTCATCGGGGGG 10259 36 100.0 36 .................................... GCGGAGAGTCCCGTTTTCAACGATACATGAAACTGG 10187 36 100.0 37 .................................... TTTCTCTCTCTTTTTCAAAATTAAGAAAGCCAATGAT 10114 36 100.0 35 .................................... CAAAGCTGTCAAATGCGGACTGTAAAATTGACTTC 10043 36 100.0 35 .................................... GACTCATGTAATCGTTCTTCTTTGCGTGTTCACCT 9972 36 100.0 38 .................................... TCTTTCACCTTTGGTGAAATCTCGTCTTTTAATTTTGC 9898 36 100.0 39 .................................... AACCGAAGCTGCAAATCAAGACAAGGATTTATTTCCGAC 9823 36 91.7 36 ...........A...C.....C.............. GGAAATAGCAGCCGCACCAATCATGTCACCTTCGGC 9751 36 91.7 40 ...........A...C.....C.............. GTTGTTAGACATTATCTTTTACCTGTACCTAATTGGTCTC 9675 36 91.7 37 ...........A...C.....C.............. ACAACTTCTTCTGAAAAATCTTGGGCATTTTTTTGAA 9602 36 91.7 36 ...........A...C.....C.............. GCATTAATGGTGATGCAATTCCCGTTGCTGTCAATC 9530 36 94.4 38 ...........A.........C.............. AGTGTATCACCGTTAATTGTGATACAGTTACCATTGTT 9456 36 91.7 0 ...........A.........C.........A.... | ========== ====== ====== ====== ==================================== ======================================== ================== 15 36 96.9 37 CTTTACAAACCCACTTCCCCGAAAGGGGATGGAAAC # Left flank : AGAAAGTTTAGCAGAAGCGATTTTAGATTTTTCTAGTCAAGCTGATGTAATTCGCTGGTTAGAAAATTTGTAAGAAATCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGGAGTCAGAATGTTGATGAAATGAAGAATAGTCCAGAAGTGAGATTTTATCAAAATAATCAAATTTGACTAAAAAAGCCTTTATTCTCCTGACTTGGAGTATTGTCTATAAAAGTGGCTCGTAATCTGTCATAAACTTGACATTTATGGTGATTTGCTGTATACATTATGGAATGTGTCGAGGTCATCGACACCACTCGTCAGAACCTTGAAAACCGCATAACTTCGTTGACTGGTGTCGATTGCTTTTGTAGTAAGGGTTTCGACGGTTGAAGTAGGGAGTTTTTTCTCAATAAGCACTGGTTTTTTCTCAATAAAAAAAGTGGTGTCGATTTGGGTATCTGAAACCCTTGCCCTGTAAGGTTTCTAGAAGTGAACT # Right flank : AATAATTCATTTTCTAGCGCGAGCAAAAAAGGTTGTTGTATTCTCCCAAACACCTTTATCAGTGGTTATTTTTTCAACTTCCGATGTGAATGCTAGTTGTAACTCCTCTAATTTTTCTGGTGATGGTTGTGGTAATAATGAATTACCTTTAAAACTTAAATTAATCGAATTCCAAGATAATTTATGATTTTGTAAATTGCTGTATCTTCCCCGTGGTTCAACTGCTATTTCAATATCTTTAAACCCTACTTGTTTTAGCAAATTCTGGCATTTTTCAGGAGTACCAAGAGTAGAAAGAATATGTGGTAAGGAAATACCAAAAGTTTTAGTCAAAGTAGCTATATAAACAGATGCTAAATAAGCGGTTTCTGGAGGACAAGTAAATGCTATATATCCTCCTGGTTTGAGGTAGTGATAGCACTTGTGTAAAATTGCTGGAATATCAGTCAAGAGTACAATTGCAGAACAACAAAAAATCACATCAAAACTATTTTCATTAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACCCACTTCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTACAAACCAACTCCCCCGCAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 25878-25446 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000013.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold13_cov28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 25877 37 100.0 44 ..................................... CGTTCAGCGCGTCTAAGCTCTTAGTATGATTCTTAATCATCCAG 25796 37 100.0 38 ..................................... TACTGGATCTCATCTAAATCATCATTGAGATCGGTCAC 25721 37 100.0 42 ..................................... CTCCCCACAGAGTAAAAATTCTACCGTCTTTTTTGACAGAGG 25642 37 100.0 42 ..................................... TCCTCTGTATCGAATCCTGATGCCTTGTTTCTAAATAATCCT 25563 37 100.0 44 ..................................... CTGCTAGTTCAGATTTCTTATCTGTAGGTATCTTTACTTTAATA 25482 37 94.6 0 ................................A...A | ========== ====== ====== ====== ===================================== ============================================ ================== 6 37 99.1 42 GTTTTTCATAACCACTTCCCCGCAAGGGGATTGAAAC # Left flank : CGAAATTGCTAATTTATGAATGAAATCTGCTTTACTTTCTGCTTGTTCAGCTTCTCTTACTAATGCGCCAATTGCAGTACCAGATCGGAGTAATTGCTTTGATAAAACAAATTCTTGTTTTTCGTTACTTAAATATTTATATAAGTTGACAACACGAACTGCAAAATCAAAGCTTTTACCCTTAATAATATTTTCTTTCATAATTGAGAATCATTTTATTTATCTTCGGGATAGCAATATTATCAATTGTCAATTGTCAATTATCAATTGTCAATTATCAACACAGATTAATATTTAGCAATTTTTTGTAATTGTAAGAAAAGTTTGGTTTTTTGAGTTGACATCTTCAGGTTTTTGTTTTATTCTGTTTTTATTGCCTCAATACAGCTATCTGAACCTTAAAAAATTAATACTTGTTTTGATTGTCACATTGTTGTTTCAGTAGCTCGGTGCAGTCGCACTTTAAAAGCTAAATGTGACAAGGGTTTCATAAGTGTAGG # Right flank : AACTTCCCTTTCTCAAAAAAATACCTTTCTTTTTCTTTGCGCCTTTGCGCCTTTGCGTGAGACTAAATCATATTTTCAAACATCAACACCAAAAAAATATGATTTTCGTGAATTGCTATGACACCTGGATGTGAAAAAATACAGATACAACCCAACCAATATAAACATTGAACTCCTTCCCCTATCCACCCACACCGCAAATATTACATTGGTTAGCAGCAGGACAACTAGCCAACAGATTACAGCGTTCAATCAGACTATGGGTAATATTAAATAAACTCTACGGGGAAGAAAACTGCACAACAGACCTACCAAAAAATTTTACCTACGCACAACTGCGCGATCGCCTATATTCTCCACACCATCCCAAAAGCGAAAAACTCAACGCCGAAGAAATAACTACAAAATGTCAAGATATCACTTGCATCTGTCATCAAACAGCATGGCAAATTATCCAAATATCAAATTGCCACATATCAGAAACCGAATGGCAACAAGAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCACTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : NA // Array 1 5444-6427 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000014.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold14_cov27, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 5444 37 100.0 45 ..................................... TAATATAACTTACTATCAAAGTAGTGTCAAGCATTTTAGTAAAAT 5526 37 100.0 42 ..................................... ACTTCTGATAAATTTTGGGGACGATATTTGCTGACTAAGGAC 5605 37 100.0 41 ..................................... AAAAAATTGAATCTGTTTCCTGTACTTTCTTTTTGCTAAAA 5683 37 100.0 37 ..................................... TCCTCACTACTAGCTAAATAATCTTCACCAACTAAAA 5757 37 100.0 44 ..................................... CCGGTGACAATATCGTGTAGCCAGTAGGGAAAACTTCTCTAACT 5838 37 100.0 44 ..................................... CACACATCAGGGTGAACCACTGCTGATAGTTTACGTCTACCAGA 5919 37 100.0 48 ..................................... TATTATGTGCGGCATTATGCGGCGAAACCTGTACCTGATAATACTCTA 6004 37 100.0 42 ..................................... TCTAACTCAACAAATGGTTTAGCTAAGTTAGTATCATTAATA 6083 37 100.0 37 ..................................... GTCAACCTCACTATGACAGTAAGTTATGCGGCATGAA 6157 37 100.0 39 ..................................... GGTAGATCAACTTCATTCTGTTTAACTTGTAACTCCTGT 6233 37 100.0 41 ..................................... ACAGCGTCACCATAAATCTTATTTTCGTTTAAGTATTCTTC 6311 37 100.0 43 ..................................... CAGAGTAAACCTTTTAGCGATTTGAGGCAATACATAGGGTGAT 6391 37 97.3 0 ....................................A | ========== ====== ====== ====== ===================================== ================================================ ================== 13 37 99.8 42 GTTTTTCATAACCATTTCCCCGCAAGGGGATTGAAAC # Left flank : GGACAGGCAAGATGCCTACTTCACAAGAATTAATTGAATATTTTTATTTGGAAGTTCCTAAAACTTTTTGCTACTCAGAGGATGTTTTAAAACATCCTTTAAACAGAAGACGCGGGTGTATGGAAGTGAACCTCCTGATGAACCACCGGATTATTTAATTTTGTAAAGTTTGATCTTCATGGTTATGGAGATATGCAGGTGGCTTAAATCAGCCTTACATCAGCTTTTGGGCAATTGTAACGGAATGTAAATGAATGTCCTGTTTTTGTCGCAGGGAGCTACAGAGATTAATATTTAGTAATTTTTTGTAATTGTAAGAAAAGTTTGGTTTTTTGAGTTGACATCTTCAGGTTTTTGTTTTATTCTGTTTTTATTGGCTCAATACAGCTATCAGAACCTTGAAAAGTTAATACTTGTTTTGATTGTCACATTGTTGTTTCAGTAGCTCGGTGCAGTCGCACTTTAAAAGCTAAATGTGACAAGGGTTTCATAAGTGTAGG # Right flank : ACGAATTGCATTAACTTTGCGAATGAAACCGAGGATAAAGCATCTGCTTAACTATTTGACCACCCAACAAATGTTTTTCCACCAGAAAAGGTACTTCTTGAGGTAAAACGCGACAATACCAGACCATATCTGGTAAAACAAGCACCATAGGTCCATTACCACATTGTCCTAAACACCCGCTAGGTTTAACAGTCACATCAGGAACAGGTAAAGCCTGAAAAGCAGCTAAAACTTCTACTGCACCTTGTTTTCTACAGGTACGATGTTGACACACCTGCACACATTTAGGAGTATCTAACTCCTGTTCTGGGACATTTAACATTAATTGATGCCATTTCGACTATAAACGCCAGTTATCGAGAATTGACCGAAAAAATTTTAGATTTTAGATTTTAGATTTTAGATTGAAATCAAAGTCTAAAATCTAAAAATAAGGTTTCAAGCCTCTCCATTTATGGAGAAAAATACAAATGTTTTTCGCCTTCAAGCCTCTTATTTAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCATAACCATTTCCCCGCAAGGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.30,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 5237-4545 **** Predicted by CRISPRDetect 2.4 *** >NZ_LUFH02000179.1 Sphaerospermopsis aphanizomenoides BCCUSP55 scaffold179_cov25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 5236 37 100.0 31 ..................................... GTTCATAGTGGTTTCTTTAAGGGAGGTTTTA 5168 37 100.0 37 ..................................... TGTTTCATTTATGCTGATTGAGACTTTTCCCGCACAT 5094 37 100.0 35 ..................................... AAAATTCCATTACCTTCAGAACGGGGCAAAAATCC 5022 37 100.0 34 ..................................... AACAAGAGATAAAATATTGGCAAAAAAGACAATT 4951 37 100.0 37 ..................................... AGCCAATTCACCCTGAAAAGACCACTAGCTGAGATTT 4877 37 100.0 37 ..................................... AGAACTTCTAACTTTTGTTTAAGTGGTGCTAACTGTG 4803 37 100.0 36 ..................................... GGCTTCCACCCTTGCAGCTTTATCCATATCTTCCTG 4730 37 100.0 42 ..................................... TTATCTTTCCTGTGGTAATAGTATCGTTCCGTGTTCTAGGTA 4651 37 100.0 33 ..................................... CAAATACTGCCACTACCCAATGACGAATCAATG 4581 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 100.0 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : CCTGCCTCCCCTGCATCCCCTGCTCCCCCTGCTGTTTCAGCATCTCACAGACAGGTGACAGGTGAGAGAATTTTTGCGCGGGTGGGTGGGTGTAAAAAATCAGATGTTGCTAAAAATGTCTGTATCTCTATCTGGACAATGGTTTGAGCTTGTTTTTATGTTGGACACACCCGCGCACTTTACACAGCAAGGGTTTCAGCGTTTTTCGCTCTTGACACGATTTCTGAAATGGACTATGATTAGAGCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCAGGATGCCGC # Right flank : AGGGATTCAAAACCATATATTCCAGCATCACTCACACCGGCAAGAATCACAGAACCAGAGTTCATTGGATCTAAACCGGTGTTATTCGGTCTTGGGACAATTACGAATTACGAATTACGAATTACCCTAACCTCTTAGCATTTGCAAACCGTTGATTAATTTCATCCCAATTAACCACATTCCACCAAGCGTCTAAATACTCAGGTCTGCGGTTTTGATATTTTAAATAATAAGCGTGTTCCCAAACATCATTACCAAAAATCGGATAATTTCCTGCCATTAAAGGACTATCTTGATTTGCTGTAGTTGTGATTTCTAACTTACCGTTTTTGCGGCTAACTAACCAAACCCAACCGCTACCAAAACGACCTGCACCAGCTTCATTAAACTGTTTTTTGAAATCTGCGAAATTGCCAAAATTATCTTTAATTGCAGTTGCAATTTCTCCAGTCGGTTCACCACCACCATTAGGTGTCATTATTTTCCAAAACATGGAGTGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA //