Array 1 50913-52796 **** Predicted by CRISPRDetect 2.4 *** >NZ_CQDY01000008.1 Streptococcus agalactiae strain RBH11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 50913 36 100.0 30 .................................... CCCTGCACATTCGTTCGTCTTGTTCAGTTT 50979 36 100.0 30 .................................... CCGTTCAATCTGTTCTTGCTTTTGGTCATC 51045 36 100.0 30 .................................... AAGGGTGTTAGATGATAATACCTTTTTTAA 51111 36 100.0 30 .................................... ACACCGTTGCGGTTGTTGTCGGTCACTCAA 51177 36 100.0 30 .................................... TCTATTAACAATAGTTTTATCCAATTGTTT 51243 36 100.0 30 .................................... TGAAAACAAGCGCAAAGCTGTCAGAAAACA 51309 36 100.0 30 .................................... AGTTATCAATGCTATATGGTTTCTCATCTT 51375 36 100.0 30 .................................... GTTTAATTTTGAATAATATCATGTTTACTC 51441 36 100.0 30 .................................... TATGTCATTGTGATTGTGGGAATACTTGTG 51507 36 100.0 30 .................................... GGCGAACTTGTAACGTTTGACGGTAATTTT 51573 36 100.0 30 .................................... TAATGTCTTTTCCTAGAATGTACATTTCTA 51639 36 100.0 30 .................................... ATTACTTTCAAGATGTCTATGACTATATGC 51705 36 100.0 30 .................................... TATTTCATCATAGAAAATCCTGCTAGTGGT 51771 36 100.0 30 .................................... GCGATGATGGTAAGTCATCATGGACAGCGT 51837 36 100.0 30 .................................... TTTTACACACGATGTCAGATATAATGTCAA 51903 36 100.0 30 .................................... AGTACTGCACTAGGAATTGTAGAGATCAAA 51969 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 52035 36 100.0 30 .................................... CGTACCATCTATCAATTTACCGCAAGCTGT 52101 36 100.0 30 .................................... CCGATTATTTCCTACATAATACGCACGTTT 52167 36 100.0 30 .................................... AACTGTGTGATACTTTTCGTTTTTTTCTTT 52233 36 100.0 30 .................................... TTTTATAAGTGATAGAGTGTGCAACACCGT 52299 36 100.0 30 .................................... TTAAAAGATTTAAACTATCAAGCGTCAATT 52365 36 100.0 30 .................................... TTCTAAATGCTGGTGACTGCTTTGCATAAA 52431 36 100.0 31 .................................... TTGCTGCTAGACCCAAACAGTTTATTTTTAG 52498 36 100.0 30 .................................... TCCTTTTTTAGATAATGTGCGATCACGGAC 52564 36 100.0 29 .................................... TTTTACCAATGCTTCCATATCGCTTATAT 52629 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 52695 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 52761 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTAAGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //