Array 1 604597-605687 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032312.1 Pannonibacter phragmitetus BB chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 604597 36 100.0 30 .................................... CCGCAGCGGATGCTGTACCGGCCGCAGCGG 604663 36 100.0 30 .................................... CTGAGGTTGTGTCTCCGACTGCTGAGTTGT 604729 36 100.0 30 .................................... CGATTAATCATGAGGTCTACCGCATCGACG 604795 36 100.0 30 .................................... GGGAGTTTGTGATGCTCGATGCGACTACGA 604861 36 100.0 30 .................................... CCTGATTGCCGATGCCAAGCGCACCCATCA 604927 36 100.0 30 .................................... GGCTCGTTGAAAATCCACGGCTCTTGATCT 604993 36 100.0 29 .................................... ATCCGGAAATCGTTGCCCTGCGCGACGAG 605058 36 100.0 30 .................................... CCCCTTGATGCCGTATGCCTTTGATCCGTA 605124 36 100.0 30 .................................... GTAAGACCCCATGGACCAACGCCGGTCTGT 605190 36 100.0 30 .................................... CGGCATTTCCGAGGTCATCCAGGCGCATGG 605256 36 100.0 30 .................................... TGCACGGAGCGTAACCGCACGCGGGAAATT 605322 36 100.0 30 .................................... GTCTGTTGGTCCGGTCCTCGGGCAGACGGC 605388 36 100.0 30 .................................... TGATCACGGCGCCATCCAGCGCACGGGCGA 605454 36 100.0 30 .................................... TCCGCGCAACACCGGCCGCCGTCGCCCGCT 605520 36 100.0 30 .................................... CTCAAACGGAATGAATTCGTCAGGGACGCT 605586 36 100.0 30 .................................... TCTTGGAACAATGTCAAACGTTACAGATTG 605652 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Left flank : CAGTCCAAGAGCCATGGCGCCAGCCGCCAGCCCCAGAGCCATACGGCGCGTGATGTTAAGGTCCTTGATCATTCAGTCCTCCCGTAGATGCGTTACAGCGCTGCCGGACATGGCCCGTGGCGAGCGCGCCACCGCGCTTGGTATCTCCTCCAAAGCCCGGCAAGGCTCCGGATCATTAGGCATCTTTCCTGTCCGGAACCTGTCCGGATTGTAAAAAGATGCGCTCCATGCGTGATGTTCTCTTCAGATCACCCCGCTCTTCGCTGGAGCACCAAGAATGTTGTGAAAGATCGTGCGGCCAAGGTCAAGCATCTTCAAGGCCTCGGCCCGGGCGGTGAAGTGCATCCGGCGAGGTGGCGGAGCGACATATTGAGGGCGTGAATCAAACATCAGCGTTACCCGATGGTTATTGTTGAGCCCTCAGGACAGGAAAGCCCCGTTACGTTTCCTTAGCCAGATTTAAACGGGCCGCCCATATTGCGCCGCAAATCCCGCCTGCC # Right flank : TAGGTGCCTGTCCAATTCCTTGAAACAAAAGGGGAATTGGGCAGTCCCCTGTGCGCAAAACGGCCAGAACCATCAGAACAGGGCGAGCTGTTCCGGGTTTTTCTTCCGCTTCTTGCGGGCCTGATCCGAGAACCGGACGATGTTTTCATACTGGCGGTCCGTGAACTGGAAGATGTAGATATCGCCCCATTCCGGCAGCGCCTGCTCGATCTGGCGGACATAGCTGTCAAACTTTTCCTTGCCGCTGCAGAATCTCAGGTAGTTTGAAAGCTGGCTCATTTCGAAGCCAATATCCAGCAGAAACTGGCGGAATTTGGTGGCCGCGTGCCTCTGTTTCTTCGTCTCGACCGGCAGGTCGAATGTCACCAGCATCCACATGATCCTGTATCCGCTCAAATGGGTTGCGCCGCTGTTGGCCCTGAGGTTCCGCTTGTTCATGTCTCCTCCACGTCCTCCCGGTCAGCATCTGGCTCTGGCTCCTGAGGCCTGCCGAGTGTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCGGCTGGACCGCGATTTCTGAACTGATAAGCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTGCGGCTGGACCGCGTTTTCTGATCTGCTAAGCT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 3033301-3032175 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032312.1 Pannonibacter phragmitetus BB chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3033300 29 100.0 32 ............................. CAGGCCGGGACAGGGTGGCTGTCTGTATTCCG 3033239 29 100.0 32 ............................. GCACGGCCAACCTCCTGCTGCAACACATGCGA 3033178 29 100.0 32 ............................. TAACCTCCGTCTCGTCAGGAACAGTGACCTTG 3033117 29 100.0 32 ............................. CGTCCGTTGGGGCTTTTCACGGCCTCGAATGA 3033056 29 100.0 32 ............................. CCCACCGCAGCGGAACGCTTGGTTCGTGTGGG 3032995 29 100.0 32 ............................. CCAGACCGATCCATCCGCTCGCCATGTCGCCA 3032934 29 100.0 32 ............................. CCCGGCAAGCGACTTTGAAGCCTCATTTGCAG 3032873 29 100.0 32 ............................. TCTGCCTGCATTTGGCGGATTGCTTCCAAGTG 3032812 29 100.0 32 ............................. ACGCAGATGGAGGCCAACCATGGCTGACAAAC 3032751 29 100.0 32 ............................. CACCCGTCACAGTTTCCCCCGACCGTCCGACC 3032690 29 100.0 32 ............................. ATGGAAAATGATTACTTTGCGGGACTTGTCGC 3032629 29 100.0 32 ............................. GCCTGGCGGGCGGGGGATCTGGCCGGGGCGGC 3032568 29 100.0 32 ............................. TTGCGCGTGAACGTGTCGATGAGGCGGCCACC 3032507 29 100.0 32 ............................. GCCTGCACAGCCTGCGGCGGCGACCAGCTCAG 3032446 29 100.0 32 ............................. CAGGATGGCAGCATCCATTTGCTGGGCAACCG 3032385 28 96.6 32 .................-........... GACAAATCGGGCGCGCTGATCCGCAGTGGCAT 3032325 29 100.0 32 ............................. CGTGCCGATGGTGGCCCGGGGCGATTCCAGCG 3032264 29 100.0 32 ............................. TCCTGCAGGAAGCGGAAATGATCGCCCGAGGC 3032203 29 89.7 0 .T........................T.T | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.3 32 GCGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CGGACTATGCCATCGATCCGGCCTTCAAGGATCCCTCTCCCTCCGGCGATGCGGGGCACCGGTCATGATGATGGTCGTCACCACCAATGCTCCGCCCCGGCTGCGCGGGCGTCTTGCCGTCTGGCTGCTGGAGGTGCGGGCAGGCGTCTACATTGGCACTTATTCGGCCCGCACGCGCGAGATGATCGCCAGTCAGGTGGCGGCGATGATCGAGGATGGCGACGCCGTGATCGCCTGGACGGCCCCCACTGACGCGGGCTTCGACTTCCAGACCTATGGCCGCAACCGGCGCATGCCCGTCGATTTCGACGGCCTGCGCCTCGTCGCCTTCCATCCGCCGGATGCCGGAAATCCGGGGCCGGGCGGGCCCGGATCAGGCTGATAGAGGCTCGCCGGACCCGTCATTCTGCCCGTCTCCGGAAGCCCTCAAAACCGCCCCAAAAACCGGTAGCTTCCTGCTCTTTGAAATTCTACAATGAGATCAATGCTCTCCAGCAAGA # Right flank : CTCGCGGGAGAGCGTGTCCGGTGAGTTGAACAGACTGTTGTTTGAGCTTGAGTAACCACAAGAACCGCAAGGTTTGGTTGTCGCTTGACAACCTGCTCATGATGTCCATTTATGGGAGGAGAGATATTGCGCAGAGTGCATCCGGACAGGGAAATCGAAGCGGCGTTAAGGCATGCTGAAGAGAAGGGCTGGCGCATCAGGCTGGGTGGCAGCCATGCATGGGGCAAGATGTATTGTCCTTACAATGATGATAGCTGCCGCTGTGGCGAGTTTTGTGTGACGAGCATATGGAGCACGCCAAAAAATGCCGGATCACACGCAAAGGCACTGCGGCGCGTGGTGGATAAATGCTCCATGAAGACTGGAGGGAAAACGGCTCAAGGCAGAGGGGAGTGACCATGATGAAGGAATACAGCTTTACATTGAAATACCGCCTGTCTGCAGAGGACGCCGGTCATGACGCTATCGTGGAACGGCTTGGAGAGGCCGGCTGCACGGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3042131-3041126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032312.1 Pannonibacter phragmitetus BB chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3042130 29 100.0 32 ............................. CACCTCATTATCAGGCTCTGACGGATCAAGAC 3042069 29 100.0 32 ............................. TATCGATTCGCTCCCCCGTCGCGCCCCTGAGT 3042008 29 100.0 32 ............................. CCCGGCAGCAGAACAAGGGCACTGCTGCCGGC 3041947 29 100.0 32 ............................. CCGGCGAGATTATTCAGCGACACATCCGCCGA 3041886 29 100.0 32 ............................. ATCCACGATCAGCGTCGGCAGCCGCTCGTCGA 3041825 29 100.0 32 ............................. GCCCCGGCTGGCTCACCAGTCGCCGCCGTCAT 3041764 29 100.0 32 ............................. ATGGATGAGCTGATCGAAGCAAGAGAAAGGGC 3041703 29 100.0 32 ............................. TGGACCGGATGCGACGCAAGCATTTGGGAACG 3041642 29 100.0 32 ............................. ATTTTGGGCTTTGTCATGATCGGGCTCCGAAG 3041581 29 100.0 32 ............................. CGTCATCCGGCGAGCCGCGTTATCATGGTGCG 3041520 29 96.6 32 ............................T TGAGCCCTAAATCGATTAGCCAGTCCGTCATG 3041459 29 100.0 32 ............................. TTACTGTCTCCGACAAATGTTGAGTCGGTCTT 3041398 29 100.0 32 ............................. AGCGACAACCTTACGCAGGATCTTGGAGTCAA 3041337 29 100.0 32 ............................. GTGGACCGCATCGCGGATGCAGTCGGGCTCGG 3041276 29 96.6 32 .............C............... GCGGCGGGGGCGCGGTCCAGCGCGGCGCCGAT 3041215 29 96.6 32 .............C............... GTGGTGACGGACCTGGCGGAGGAGGCCGGGCT 3041154 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCACACGCGGGGATGAACCG # Left flank : CCCTGCGTATCGCCCGGATGCAGGGCGGCACACTGATGCCATTGGCCGAACCCGGCGGCCCCGGTCCTGAGGCCATGGCAGAGGCCTGGGCCCTGTCCGCCCTCAGCTGCCGCAAGGCGATCCTCACCCGGCAGGGCAGGGACGCGCCCCCGGCACCGGATGCGGCAGAAGAAAAGCGCCGCGCCGCCGCCCGCGAAACCCTGCGCCGCAGCTGGCCGGAGTTCGAGGCCTCCATCGTCATCGCCATTCTGGGGGAGGACGGCCATCTGGACGCGGGCCCGGACTACAGCCGCACGCTCTTCTACTGCCGCAGGCGCGGCCTGACGAACGGTGCTGCGCGGGAATGATCCCGCACTGCCGGGGCTGCAATCAAGGCGGGTTTTTCTTGCCTGCCGCAACCCCTTGCGCCACTCTCCAATCCGCCCTCCGAAAGCCCCCGAATTTCCGGTAGCTTTCCGCTCTTTGAAATTCTACTGTCAGATCAATGCTCTCCAGCAAGA # Right flank : CATCTCCTTTCCGGACTTTTCCGGCTGCATCAGCGCGGGCGATACAATGGATGAGGTGTTGCGCAGGGGGGCGGAGGCCTTGGCCTTCCACGTGGAAGTCATGAAGGAGCACGGCGAGCCAATCCCCGCACCGCGCGAACTTCCGGCCATTCTGGCGGATGACACATTGGCGGAATGGCGCAGCGGGGCAACCTTTACCTCCGTGCCACTCGTTCCGGAATCCTGACGTGCTGCGCCGCATTCCGCAATCGAAGATTGATCTTCCGTTACGTTTATCATAGGGTTGAATCTGGCGAGTGTTTGCATCCTTGAGTGGGGGAGGTGCGGCATGGGCAGGCTGGTTTGGTGGCTGGGTGTTCCCGTCGTTTTCGGTGCGGGCGTCTTTGCAGGCGTGCTGTTTTCGCCGCCACTGGGCACAGCGCTGCTTGAGGCGGCCGGGCTTGATGGCGCTGGCCGGAAGTCATTGCTTGACCAGACAACGACAGTTGCCGTTGAGTCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [45.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //