Array 1 9819-9088 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAQ020000020.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 9818 35 100.0 35 ................................... AAAGTTAAGCATTAGCAGCTCATTCTATTAACACT 9748 35 100.0 38 ................................... ACCCTTGTCGGCAACCCAAATCCTGTTGCCATTTTGAT 9675 35 100.0 35 ................................... TGAGACACTTTATACATACACTATTAGAATTTATA 9605 35 100.0 33 ................................... CTAAAGCCTCCGTCATCTATGAACTCTTTCATA 9537 35 100.0 34 ................................... AGCCACCTGTGTGGTGGTTAATAGTAAATATTAA 9468 35 100.0 34 ................................... CTCTTCAACCGTACCAGTATACCCAGCCCCATCA 9399 35 100.0 33 ................................... TTACAAAAATGCTTGTCCAACTAAAGTTTTTTT 9331 35 100.0 33 ................................... TAACTGCTCTTTCATACACATAGCTACTGTAGC 9263 35 100.0 36 ................................... ATATACATTAATAAACTACTTAAAACCTTAATTGAT 9192 35 97.1 35 .........A......................... CCACGGCGCAGAGTTATCACTCGCATCCACCGCAT 9122 35 77.1 0 .................A.....A..GC..AGT.G | ========== ====== ====== ====== =================================== ====================================== ================== 11 35 97.7 35 GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Left flank : GCATTAAATGAAATACTATGTTTTTTGTTTTGACATTGCTGATAACAAAGTGCGCTATCGTGTCAGTAGAATTTTGCTAGACTATGGCGATAGGGTGCAAGGCTCCGTATTTGAATTGGCACTAAAAAGCCATCACGATATTACCAAGATTCTAGAAAAAATAAATAAAATTATTAACCCAATGACAGATGATGTAAGATATTATTATCTCAGCGGAGAAAGTTTGCGTCGCTCAAAAAACCTACAAGGCGAACGAGTCAAGCAACCCCCTGCTATAATTATTGTCTAATTCGGCAAGCACGATAAAAAATAGTAAGTTAAGTTATTTCATTAAAAATCAATCACTTAAGTTTTTCGCTTGCCGAATGGCTTAACCACAATACTTTAACCAAATTAAAAAGGTATAATATGCACAGTTTCACTAGATTTTCTAAAAAATTACCGAGGTTGCCGAATTCGCTTTGTATTTCGTTGATTTATAAGGTGTTTTTTAGGGTACT # Right flank : TGCTTATGAGATAAGCAAGGTTTAATAAATTAAACAGAATTTTTTTTAATTTTGATATTGCCACTGAAGTTAGAAATTTTGACTCTTTAAACTTTTTTACCTAGATGATTTGTTTAATAAATATAGTAAGATCTGTAATAAAATTTAAGAATATATTTTTTAGTTTTTTACAGCAAGTTAGTGCTTATGTGATCTTATCGAAAAAGCGGTAAGTGGTTTTTTATCTATTTCTTGCGTTATTAATGACTGATTGAATCTTTCTCAAATCGTCAATATTCGTTTCAACATAACCTAAAGTTGTTTTAATGTCAGAATGACCAGTGATTTTAAATGGCATTTGCTATTGGTAATTTTTGTCGCTGTTGTGTGTCTAAATCTGTGGGGAGAGACAAGTGCGCCAATTTTTTTCGACCACTTTGTGAATAGTCTTGAGATTTGATCTTCGTTTATTTGTTCTGCTTTGTAACTGTTTAAAAATGTTGTGATATTAAAAACTTGTT # Questionable array : NO Score: 3.15 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGACCCGCCTATTCGAATACGGCAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 301153-300373 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAQ020000076.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 301152 36 83.3 39 ..TT...T..T..................G.....G GCTTTAGCGTAGTAGAACATCTCTCCCATATTTGTAACT 301077 36 94.4 39 ..........T..................G...... GAGTCGGTGTAGGAAAACATATACCCCATATCTGTAACT 301002 36 91.7 39 ...T......T..................G...... ACGATAGTGCTGGCGAACATGTAGCCCATATCTGTAACT 300927 36 86.1 39 ..A.......T...A..G...........G...... GCAGAAGCATCGAAAAACATCCAGCGCATATTCGTAACA 300852 36 83.3 39 ....CC.........C.G.T.........G...... GCTTCGGTATAGTCGAACATTCCAATCATATTTATAACA 300777 36 88.9 39 ..A..C....T..............T.......... GCAATAGCACCAGAGAACATATCCTCCATATTTACAACC 300702 36 88.9 36 .C..C..............T.....T.......... GGAGTTGAGGAGAACATTGAGCTTGTATCTGTAACT 300630 36 88.9 36 C...C..............T.....T.......... AGAGTGTCAATGAACATATGGCTCATATTTACAACC 300558 36 100.0 39 .................................... GAAGTGGCATAACAAAACATTTCTTTCATATTTACAACC 300483 36 100.0 39 .................................... ACATTGGCGCCATAGAACATTCGATTCATATTCGTAACA 300408 36 88.9 0 ....CC.................G...........G | ========== ====== ====== ====== ==================================== ======================================= ================== 11 36 90.4 38 TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Left flank : AATAACTCAGGTTAATTTTATCGCCTTCGCTAGCGTTAAAATCTTTAATGGTGTCATGACCCGCATTTTGATAACTATAAACAAAAGTATCCGCACCAGCGTTACCCGTAAGAGTGTCATCGCCTGCACCGCCGTAGAGTGTGTCGGCATGGTTGCTCCCTGTTAGCGTGTCATTGTCACCTAAACCGTGAAGGGTGATAGCCTCCCCATGTCCGCTCTTATCTATTGTATTCTTGGCGTTGTTGCCAACAAATACATCTTTAATACCATTGTTATTACTGTCATTAAGTAATCCATTATCAGCAATAGTCCAGTTCTTGTCCAGTAGTGCTTGGCGTGCCGTGGCATTGGTGTATTTAGTGTCATTTGCACCAAAACTTACGCCTGTTTTTATACCCTCATTGTCGGTTACATTAACATCTGACCAGCCTGCTAGTAATAGGTCGTAGTTTTCAGTGCTAAAGGCGGTTTTATCAAGTATATTATTAGCAACCTCCAGA # Right flank : CCTTCGTTATAGCAAACGCCTCGAGTAATAGTTTCGTCATAGCAAAACATATAACTCATATTGGTTGCCAACGAAGTATCCATGTTACTAATGTCGTCGTTGAATGAAGTGTGTCCGAAGTAGAGAAAGGAAAGATTGGCACTTTGTTCAGTGACCAAAGTTGCCACTTCATCAGTCATTATTGCTTGAGCAGCACTATCTGTTGGATTGGTAAAGTCTGTTTTTGCTTCAATAGCAGCTTGATAACGGTCTTCTAGGTAGTAATTAACACCTTTTGCCACCATGGATAATTGCTCAACAGTGGTTTTGTCGTCATCAGGTGTGTTCCCGACATAGCCAGAATCCTCGTAGATTTTGTTAAGAACATCGGCACTACTTAATACAGTAACATTAAAAAAAACTGAGGCTGATATCAACTGAACTGCATCAATTTCATTGTATTCATTGGCATTATTGCCAATCGTTAAGCGAATTTTATTTGATAAGTAATCAAGTGCATG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.52, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGCTAACATCCCAGTTACCAATATCTTGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.80,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-22] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 1 59743-49798 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAQ020000078.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 59742 28 100.0 33 ............................ ATAGCAAGAAGTTGTTTTTTTCTCCTCACGCCC 59681 28 100.0 32 ............................ AACGACGCTTATTAAGAATTTAGTATCACTTC 59621 28 100.0 32 ............................ TATTACATCCCCGTTTGAAAAACAAAGGGTAT 59561 28 100.0 32 ............................ TTTTTTAAAAGAAGAGGAAGACATTATTTATC 59501 28 100.0 32 ............................ GTTGGCCCCGCCGGCAGGTGAACTAAATTGTT 59441 28 100.0 32 ............................ TTCTGAAAAAGGCTCTTCAGACGCAGTCTGAC 59381 28 100.0 32 ............................ CAAGTAACATAAAGACAAAACCGTGTTCAACA 59321 28 100.0 32 ............................ ATTGACGGCTACGCTCAAGACGACAGCCGACA 59261 28 100.0 32 ............................ TAAACTAGCAAGTTTATATCCATTTTTTATTA 59201 28 100.0 32 ............................ AACAAGACTCGAGTTCTCGAGAAGTAAATAAT 59141 28 100.0 32 ............................ ACTGGCGAGAGCGCTCGAGGCGACAACCAACG 59081 28 100.0 32 ............................ AAGATTAGCAAAAACAGGCCAATAAAAATCAA 59021 28 100.0 32 ............................ ATTATTTGCGTTTTGATGAAGATGGTGTTTGC 58961 28 100.0 32 ............................ ATTCACTTTAAAGTAGTCTTTGGGATAAACAT 58901 28 100.0 32 ............................ TTCTATGGACGAAAAGCATTTTTCTCTTTTTC 58841 28 100.0 32 ............................ AATAACAACCGCTGCTTGATAATTATTATTAG 58781 28 100.0 32 ............................ ACCTGTGGTTTTTCTCAATAGTGTTGGGGTTA 58721 28 100.0 32 ............................ TAAAAAGGGGACCTATATAATTAAGACCGCTA 58661 28 100.0 32 ............................ CGTTAGATGGTTGGGTTGTGCTTCCTTACGAT 58601 28 100.0 32 ............................ TACTACCCTCACCTAGAGCCTTCGACATAGTA 58541 28 100.0 32 ............................ TGCCATTGTTGGTATGGATTATCAATCTTCTT 58481 28 100.0 32 ............................ TATGAATAATCAGGGTGTAACACATTCTGATA 58421 28 100.0 32 ............................ ATCAATATCTTGCTTGTTCTTAACGATGTTTT 58361 28 100.0 32 ............................ TGTTATTGACAGGAGTATTAGTAATGTTAAGG 58301 28 100.0 32 ............................ TGTAAAGCCAGTTCCACCAACGCCAACGCCAA 58241 28 100.0 32 ............................ TCATTAATATTGCCATACTTCTCTAAATTAGA 58181 28 100.0 32 ............................ TTTCTTGAGTCCACTTGGAAACTAGGTTTTTC 58121 28 100.0 32 ............................ ATTGGATCACCTTTTTGTGCCCATGGCAAACA 58061 28 100.0 32 ............................ TCAACCACACCAATAAACTGCTCAACACCAAT 58001 28 100.0 33 ............................ TTCAATAAAAGCACCATTTAGCGACCCCATATT 57940 28 100.0 32 ............................ TAATCAATTGGCAGATAGGGCTCTTAAACTTC 57880 28 100.0 32 ............................ CTTATCTGCATATCCGAATAATCCCTTAGGTG 57820 28 100.0 32 ............................ AATACCTATTGCTAATGCGGTTAACGGTATTA 57760 28 100.0 32 ............................ ACCCTCGCATACAACCCCGTCTTAATCGCATT 57700 28 100.0 32 ............................ ATAATAACAAGAAAATGCGTAAGGCTAAAAAT 57640 28 100.0 32 ............................ AAACGGGAAAAGATTATTTGTAAATAGAATTG 57580 28 100.0 32 ............................ ATACTCAAATATTTGTGGTACAATATTTCCGT 57520 28 100.0 32 ............................ ATAGAAGTTGAAATTATAAAAGACTCATCAGG 57460 28 100.0 32 ............................ TAAAATAATTATTTCCTATTTTGCATTGAACA 57400 28 100.0 33 ............................ GTCAGTGTATATTATATCATCCATTTTTAATCC 57339 28 100.0 32 ............................ ATATGTGAAAAGTTCTGGCACTTCGTTTCCGT 57279 28 100.0 33 ............................ TAAAGTTGTTACTGGTCATAAAGATAAAGATTT 57218 28 100.0 32 ............................ TCAGACATTAAAATAAGTTCAGATTTTATACT 57158 28 100.0 32 ............................ TCCACCATAACCTCTTTCCCATGCTTATCCGT 57098 28 100.0 33 ............................ AATTTAAAGCACGGAGCGATATTTGGTTTTTCT 57037 28 100.0 33 ............................ TTTATGCGCATAAATGTTTGCTGTTATACCGCA 56976 28 100.0 32 ............................ AACAGTCAATTTAAACCCGTTCATTAAAATAA 56916 28 100.0 32 ............................ TTGGATGCAATTCAAGTTTTAAAGATGATGGA 56856 28 100.0 33 ............................ TTTCATCGAGCATTGCCACTTGTCTCTCTGGAT 56795 28 100.0 32 ............................ ATTTGTAGCGACTCTTTCGTTTCGGGTTGTGC 56735 28 100.0 32 ............................ TTGCAATTAAAGTTAAAGCAAGCACAAGATGC 56675 28 100.0 32 ............................ ATATAGAAGATGTTACTGGAGATTATGAAATT 56615 28 100.0 32 ............................ GCTACAACACGGAGAGCCTTATTACTGGTGCA 56555 28 100.0 32 ............................ TGTTGAAGGAGGATTAATTATGAATAAAGATA 56495 28 100.0 32 ............................ GTCATTATCTCTGCTATCATCTATTATCTTGC 56435 28 100.0 33 ............................ CTAGCACTGCTTTGCTGATTTGTTTGTCTAGCC 56374 28 100.0 32 ............................ GATAATCAGAGCCGGATTTAGAAACGCCTTTT 56314 28 100.0 32 ............................ AGTAGTTATTTATTGATTGAATTTGATGATTA 56254 28 100.0 32 ............................ CTTGGGTATTCTTGGTACTCCGTCCACTACTA 56194 28 100.0 32 ............................ TAATGCCCCCAGCACATAGACATCATTTAGAT 56134 28 100.0 32 ............................ ACATAGTCAATAACCAAACCTTGGCGTTCTCC 56074 28 100.0 32 ............................ TATCAGATAGGATGATTGGCATTAGCCAGTGC 56014 28 100.0 32 ............................ TTAAACAATGGGTCGCTTGTGGGCGTATCTCT 55954 28 100.0 32 ............................ ACCAGCCTCAAGACCTTTAGCACTTACTAATA 55894 28 100.0 32 ............................ TTGCAGTTTCAAACGAAGTCATATATTCCTTA 55834 28 100.0 32 ............................ CATAGATTTGATGGGTCTCAACATTGGTTCAG 55774 28 100.0 32 ............................ TCTTCAGCCAAGTTACTTGCATCCGCCTTAGC 55714 28 100.0 32 ............................ CATAGATTTGATGGGTCTCAACATTGGTTCAG 55654 28 100.0 32 ............................ CATACAAACTATCAGTAAGAATTAATAAAGAC 55594 28 100.0 32 ............................ TTAAGCCTAGCAATAGTTTCTGGTGTTATCTT 55534 28 100.0 32 ............................ GCATAATCTTCGCCCCATCCTGTGAGTCCGAA 55474 28 100.0 32 ............................ TGTTCAAGTTGTAACTAAATGTGAGCCGTCTA 55414 28 100.0 33 ............................ AAAGCGTGCGATTTGTACGAAAAAGAGCAAGAA 55353 28 100.0 32 ............................ GTTTTTACTGATTTTGTTAGTTTTATTTGGTT 55293 28 100.0 32 ............................ TCTTTACTAATAGTGTCGCAGTCATCAAATCT 55233 28 100.0 32 ............................ TTCTAATGTTTCCGCCTCTAGTAATATTTTGT 55173 28 100.0 32 ............................ AATCTCCAACATTAATAATAATCTCCTTTGAG 55113 28 100.0 32 ............................ TTTTGCTTAAGTGGCGCAAGTTCATCATAAAA 55053 28 100.0 32 ............................ CTTAACAGAGACTTAGTAAAGTCCTATGTAGA 54993 28 100.0 32 ............................ AAGCAAAATTAAAATCAGGCATCCCAGCCAGA 54933 28 100.0 32 ............................ CAATGCGTCTAAGAGGTCTGATTGCATATTTC 54873 28 100.0 33 ............................ ATAGCAACCGATTGCAACACCAATAATAACACT 54812 28 100.0 32 ............................ TTTTTGCGCCCATGGCAAAACGGAAGTAAAAT 54752 28 100.0 32 ............................ TTATTAGAAGGGTCAGGAGGACTAGAAACATC 54692 28 100.0 32 ............................ TACGGAACATCAAAAGCCACAAAGAACGTGTC 54632 28 100.0 32 ............................ CGTTACTGAAACGGTAAACGAGACTGAATATG 54572 28 100.0 32 ............................ ATAAAGGGGTAGATATAAAAACTAAAGGTGGT 54512 28 100.0 32 ............................ AACAGTAGAAAAGCCTAGCTTCCAAGTAGACT 54452 28 100.0 32 ............................ TGAATTAAAAATTTTGGTTTATCTTCATTTTT 54392 28 100.0 32 ............................ AGTTATGGCAACTCTAGGCTCATTTTTAGCCC 54332 28 100.0 32 ............................ ATACACCCACAGAGAAGTTTGGTTTATTGTGC 54272 28 100.0 32 ............................ AGCAGAGTGCTCTTGAATTTAAACAGCAGCAA 54212 28 100.0 32 ............................ TCCCAATGAGCCTGCACAGCCTCCTCACCACA 54152 28 100.0 32 ............................ ATAGTACGGAAAATACTAGATTTAATGCGATT 54092 28 100.0 32 ............................ TTGTTGCATGGGTTACCATAGCAACCGATTGC 54032 28 100.0 32 ............................ TCACTAGCATCATCATACTCAGCGCAAACTTT 53972 28 100.0 32 ............................ TGATGATTTTGATAAACTAAGTTATTCTGTTT 53912 28 100.0 32 ............................ TTGCTAGCGTGTGCTTTTACTTTACCTTCTTT 53852 28 100.0 33 ............................ ATGCAATATATAAAGTTTTTAATCCTGTATGTT 53791 28 100.0 32 ............................ AGTAAAAACCGCCATTGTTGGTGGAATACTTT 53731 28 100.0 32 ............................ ATCTCAATTAATTTTTTAATATCACCTTCTTC 53671 28 100.0 32 ............................ TGAGATTGCTGAACCGAACTGTTTGGCGAATG 53611 28 100.0 32 ............................ ATACGATTTTGAGATTTCAACGCTAAAATATT 53551 28 100.0 32 ............................ AAAATATCGTTAAGAACAAGCAAGATATTGAT 53491 28 100.0 32 ............................ CGCTCAGTTATCTTATCCAACCCATCAGGCCA 53431 28 100.0 32 ............................ AACTTATGTTCGTTTAAATGCCAATGGCGATA 53371 28 100.0 32 ............................ TCTTGATCCATTGATGGATAATGTTCATTTTT 53311 28 100.0 32 ............................ ACTAACGCCTGAGCAAAAAGCATCAGGAATGC 53251 28 100.0 32 ............................ TTTTTGAGCCCAAGGTAAAACGGAAGTAAAAT 53191 28 100.0 32 ............................ TTCTCCGCGTCGCCCCTCCCTCGTATCATTAT 53131 28 100.0 32 ............................ GGCGTTGGGATACTCCAGTGCGGATGCTATAT 53071 28 100.0 32 ............................ TCCTGAATTATAAAATGGCTTTTCTCTTTTTT 53011 28 100.0 32 ............................ ACCCTATTCTCGGTCTTTCCGTTAAAGACGCT 52951 28 100.0 32 ............................ AATGGCATGCTTTCATCCTATGCAAGCTTTTC 52891 28 100.0 32 ............................ AATAGCAGGTTTTAATGACATATTATTATATT 52831 28 100.0 32 ............................ ATAGCCCCAACTTGTCATCAGTTATCTTGAGT 52771 28 100.0 33 ............................ TCCTCCAATGCTAAATGCAGTCATAGGCATACT 52710 28 100.0 32 ............................ TTTGAAATTCGGTAGATATGTTTTAAATGTGT 52650 28 100.0 33 ............................ TTAATAACTGATAACAATGTAACTATAGTACAT 52589 28 100.0 32 ............................ ATGATAAGCTGCATCGTTCTCTTGCTGCTTTT 52529 28 100.0 33 ............................ TTGGATGGCTCTTGGTGGTCTTGCTGGTTCTAT 52468 28 100.0 32 ............................ ATTAGGAATCATAGTCTCAACAGGAAGACCAA 52408 28 100.0 32 ............................ ATTTTTGAAAATCAGACTTCAAAAGACCTCTG 52348 28 100.0 32 ............................ TGAAGGCGGAGGATTGTGCTAAGCATCAGATT 52288 28 100.0 33 ............................ TCATTACCATGCCATCATTTTCGGTTTTGATTT 52227 28 100.0 32 ............................ TTCTAATTTTAAGTCTCGTCGTTTAGTTGGCC 52167 28 100.0 32 ............................ TCTTATCAGCGTTTGGGTCGTCGTTCTAATAA 52107 28 100.0 32 ............................ TTTATTAAACTGTAACTCTTCCAATTGAGCAC 52047 28 100.0 32 ............................ CACAGACCTTAAACGAATTGTTGTTAAAAAAT 51987 28 100.0 32 ............................ AACAAAAGAAGCGTTTGAAAAACACGATTTAT 51927 28 100.0 32 ............................ AGTTTGACCCACAATAATAGTATGCATAATTA 51867 28 100.0 32 ............................ TTATAGAAAAATTTATTTTAATGAATGGCTTT 51807 28 100.0 32 ............................ CGCTCCCTGTTTGCCCGACGATAATTGTGTGC 51747 28 100.0 32 ............................ TTATAAAAAGATTGAGTTGGTTGTCCACTATT 51687 28 100.0 33 ............................ GATGATTGGGATTGCTTTAAAAGAGGGTATATT 51626 28 100.0 32 ............................ ATCCCCTCCCATCCAATCCCATCCAATCCCAC 51566 28 100.0 32 ............................ TTATTTGAAAATCTAGCCACATGGCTAGACAA 51506 28 100.0 32 ............................ TACTAAAGTTTTAAAATTTTCTCTATCTGATG 51446 28 100.0 32 ............................ TAAACTAGCAAGTTTATACCCCTTTTTAATTA 51386 28 100.0 32 ............................ TTCTTATGGAGTGGCTCGTTTTTCTGCAATCC 51326 28 100.0 32 ............................ ATTTACAGTAACTACAATTCTTTCAATCATAG 51266 28 100.0 32 ............................ TCTAATACCTGATAATAATCCCCGTTCTCTTC 51206 28 100.0 32 ............................ AACTAATCAATAAAGGACACATATTTGACAAT 51146 28 100.0 32 ............................ GATTCTACAAAGGTTAGATTTTGCTTTTTTTT 51086 28 100.0 32 ............................ AACTACCCCAAAAACAGAGGATCCAGACCCTG 51026 28 100.0 32 ............................ ATCTTTGGTGGCTTTGTTGTTCTAGCATTGTT 50966 28 100.0 32 ............................ GCTTAGTCCTCTCTAACCCTATCTACTAAAGC 50906 28 100.0 32 ............................ AGTATTTTCTTTCCAAGCAAGAGGAACATTAT 50846 28 100.0 32 ............................ CAGTCATCATAAGATTCGGTAGTTTGCTGGAC 50786 28 100.0 32 ............................ AAATTCGTGGTATTGACAAGCATGTGCTTTGC 50726 28 100.0 32 ............................ TCTAAAATTAGGTCGCTTGTTAGATTAGTTAT 50666 28 100.0 32 ............................ TTTGCTAGATGTGGTGTGGGTGCTATCTTGCG 50606 28 100.0 32 ............................ TATCTTTAATATTGCTGTAAAAATAAGCGACA 50546 28 100.0 32 ............................ TGATGTTAATTTGTGCAGATATTTACTGTCTA 50486 28 100.0 32 ............................ GTCAAGACACATCATACTCACGCCATCACTAT 50426 28 100.0 32 ............................ TTTTATGGCAAACACGCCAAGATGAGAATTTT 50366 28 100.0 32 ............................ TTAAGGAGGTTTATCCGCTGGGGTGTGATTCA 50306 28 100.0 32 ............................ TAAACCCGTCAAAGAATCCTCTACGCATCTTC 50246 28 100.0 32 ............................ ATTCCTCTTTGCTTAGTTCTGAGGTTACAGTA 50186 28 100.0 32 ............................ TCTAAATAGTTTATGGTTAGATTGTTAGTGTT 50126 28 100.0 32 ............................ CAGTACGGAGAACCTTATTACGGGTGTTATAA 50066 28 100.0 33 ............................ AATAAATAGATTGTCATCATTGTAATCAGCCAG 50005 28 100.0 32 ............................ TCAGTAACCTCAACAATCTTGTTCTGAGCTTC 49945 28 100.0 32 ............................ CAAACAAAAATCTTGATGACATGTGTTTCGAC 49885 28 100.0 32 ............................ GCTAGAAGCAAAACTATAGACGGCTTTCCAAT 49825 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 166 28 100.0 32 ATTCACCGCCACACAGGCGGCTTAGAAA # Left flank : AAACTGGTTAGGTGGCTTATCTGGCTATTGTAAGACAAGTAATATCTCGAAAATACCTGATAAAGTCAAAGGCTACCAAGTAATTTCACGCATTCGTCAAACAATGAATGAAACCAAGTTAAGCCAGAGAATTTCACATCAAACACAAAATAATATTTTAAAAACTGATACAGATATTCAAGCATATGAAAACCAATATCGAGCAAAAATGATAGCAACAGGGTTGGGTAATCCATATTTAGAATTAAATAGCTCCAAAGGCGGATTGTATCGGATTTATTTGCATTTTGGCAAAATTCAAAATAGTCCTATCGCTGGTAAATTTAATAATTTTGGACTTAGCAAAACAGCAACTATTCCAATCTTTTAACCATTGATTTGGTTGCTCTTTAAAAATTTGTTAAAAATCAAGTAGTTGCAATAACGATAAAAAACATTGGTAAAATCATCTTTTTGTTTTAAATGATTGTTACAATTGTTCTTTTTGCAATTAAAATACT # Right flank : GATCAACCTCGTAATTTAGCCAAATCAGTAACTGTGGAGTGAGGCTGATTTGGGTAGAACTTTATCGAGTTTGTCGTTATATTTAAGTAAACTTTTTTGATAGCTTGTTAGGGCTTTGATGTAGTCTAATTCAACATCGCATTTTTCTTGATAAGCATCAATCAAGGTTGTGATAGGAACGGATTTATTGAGGTAACTTGTGTGTGCTAAATTGGATTCGTCGTTTACATTGGTGATTAATTTTTGGTATTCGTTGAGTGATTTTTTTGCCAAATGTAATTCAACAATTAACGCTTGTGCGTCTGAAAAAATATCTTTTAATTTATTGTTGTAATCTATGTCGAGTTTCCGCAAATTTAAGTGCGTTATTCGAATGTTTTTTTTATTATTAATGTCAGTGCCAATTGGCATGGAAAAATTAAGTCTAGTAGTATAAAGGACGCTCGTACTCTTGTAATCGGTGGTCATTGTATTGCCTTTGTTATTATTCACTTCGGCAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCACCGCCACACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACCGCCACACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.90,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16418-16079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAQ020000080.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXS, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ==================================== ================== 16417 39 92.3 36 ...C..G....................G........... GAATGCCGTTTCCTTAAACATGTTTTGCATATTAGT 16342 39 100.0 36 ....................................... AGCGACTGCACCATTAAACATGTGTTTCATATCGGT 16267 39 100.0 36 ....................................... GTTATATGCAGAACGAAACATATCAGTCATATCAGA 16192 39 87.2 36 ...T...GTG...................C......... GATGTGTGCGCTATTAAACATGCTTTGCATATTAGT 16117 39 92.3 0 ........T.....C.....C.................. | ========== ====== ====== ====== ======================================= ==================================== ================== 5 39 94.4 36 CACATTACCAACATTCCAACTGCCAATATTTTGGTTAAA # Left flank : CCTGCATTTTTAAAACCGTAATAAAAGACATCTCTACCACCGCCACCGACTAGAAGGTCATTGCCTGCACCACCGATTAAGATATCATCTGTAGTGCCACCTATCAGCGTATCATCACCCCCTAAGCCATGCAGCGTCGTCCGTTTGGCATCTGTGTTGAGTGTATCAACACTATTGCTACCCTGTATCGTTTTACTGCCATCAAATATGCCAACATCAATATCCCAGTTATAGGTGTCTATTAAATATTGTTTGGCAGTAGCATCAGTATAGTTTGCGATACTCCACTTAACATCACGCTGAATAGTAGTCTCTCCTGCAGCGGTATCAAGTTTTGCCCAACCACGCAAGGTATTATCCATATTGGCGATATCCATATTGGTGGAAGCCACTGAGATGCCAGTAAACATACGCTCTGCATTTGTTAAACTCGAAATGTCCCAACTGCCAACATCTTGATTGAAGCCTGTTGCGCTCCGAAACATACCCTCCATATTAAC # Right flank : TTTCTTTGCGTTAAAAAATGCTTGAAATGCGCTATTTGCATGGGACACATCCCAATTGGTTAAATCAACATCAGAGCCATTACCATCAACATCAATATACCTTTGTAAACTGTAAAGCGTGGTTATATTTTTAGCGATGGCAGTATTGGCATTGCCAGCAAGATCTACAAAGGTATTTGCTGCAACTGTGATAGCAACATTAGCATGCAGTCCACCTAGGCTTGCTAACGCCACAGCAGTATATTGGCTTGCACTTACTTTGGTAAGTGAGACCGCATTAAGAGTACCATTTTCAATGCCAATATCATCTGCGGTAAACGACCCATCTTGAATGGCTTCACTAAAATTAAATGTGATTGTTCTGGTATCTTCACCACCACTACCTGTAATCGCAAGAGTTGGTGTGCTGGTGTTTAGCGTGAAGGCAATGGTTTGCTCATCGGAAACATTTCCTGCTCCATCTGTTTGCCTTACTTTTACTGTGTAAATGTCGTCCTCTG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CACATTACCAACATTCCAACTGCCAATATTTTGGTTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 69707-71181 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAESAQ020000099.1 Bathymodiolus thermophilus thioautotrophic gill symbiont isolate B thermophilus SOXS, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 69707 37 100.0 34 ..................................... ATTGAGTCAAGTTTTGTCCTTTCTTCCTCATACA 69778 37 100.0 36 ..................................... ATAGTGGCTGGATTTGAATATGGTACTTCTTTGCTG 69851 37 100.0 34 ..................................... CATATGACTATTCAGAATGCAGAAGATGTTACTG 69922 37 100.0 37 ..................................... TCAAGAACTTGCTACTCAAGGTTCTTCTGCCTCCCCA 69996 37 100.0 35 ..................................... TATTTTTATTGCACCTATGGGGGATTTGTCTCAGG 70068 37 100.0 34 ..................................... CTGAGAAGTGGGTGTCAACCGTAACCTATGCTGT 70139 37 100.0 36 ..................................... AAATTCACGCTCAATTCTTGATGCACTGTGTGTAGT 70212 37 100.0 34 ..................................... CAGGCAAATGAGGACCAACTAAACGACGACCACG 70283 37 100.0 35 ..................................... TCTTTTGTTTCTTTTTTAAAGATTCATCGTCATTT 70355 37 100.0 34 ..................................... TTAATCTCACAGATGAGCAGATTGTTAAAACTGA 70426 37 100.0 36 ..................................... AAATTTTTGTGAAATACCTTGTCTCCTCTTCTTCAG 70499 37 100.0 34 ..................................... ACAAACACGGTTTTAAACAGTCGTTTGATGAGCA 70570 37 100.0 35 ..................................... ACTTCTCACGCAAGAATTTATGATCCAGTCTTCGA 70642 37 100.0 36 ..................................... CAATATCGGAATTTTCAATACCTAGCATAGCAACTG 70715 37 100.0 35 ..................................... CTTCATCTTTAGTACTCTGCATAGCGCCATTCATT 70787 37 100.0 34 ..................................... GTAAAGTGCCTTATTTGGCTTTTCTGTTGACTTG 70858 37 100.0 34 ..................................... ACTTCTATGACAGAAGACACGAGGGTTTAGCGGT 70929 37 100.0 37 ..................................... GTTATAACCTTTGATAAAGACAATATGACAGGTTCCT 71003 37 100.0 33 ..................................... CGTTTATTTCAATTTCAAATAGATTAAAAAGTG 71073 37 100.0 35 ..................................... TCGCGGCCAGATTAATGAGTTAGTTGATAAGCGTA 71145 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 21 37 100.0 35 GTTTCAGTTGCTGGTTTTTTAGGTTATGATGTGCTGG # Left flank : GCCCAGTAGGCAATATATGGGTTATTGGCACACATTACAGTAAACAACGACTCAGAGATCACGACCATCCAATACACTTGCCATTCACTCAGGACACAGATCTTGTTGACTCTTTAAATAGATACCACACGAGGTTAGTTCGTCACGATGTTATAGTCAATCGTTGTTCTTCCAATCAAGTAAACGCTTACAGAGTACAACGAGTGGTAGAAGGCTTGGCTTACATAGAAACAGTAGAAGGGCCATACAGCCAATGGTCGGCTCCCGTAGATTTGTATGGCACTTGTTATCATAAGTTATAAGCGTGTTGCAAATACAGAACTAAAGCAAAGCAGTCAATTGATTTACTGTGCCAATAAATTGCCCGTCTTCACTAAGTGTTAAATGAGCGTGCATTTGTTTCAGCCATTATCTTTAAATACTTAACATCAAGACAAGACAACATTAGCGCCTGCATTGGCACCTCGTTATTACTTGAATAAAAATCTAGCATTAATTGA # Right flank : GTCTGCCTTAAAACCCTTACTAAATAAGGATTTTAAAGGTTGAAAAATTGATGTTTTTACGAAGTTCATAAAAATATTAAAAAGTGTTAAATTCTGCGAAGTTTATTGTTATAATATTTACTTTAAGTGCCAGCACATCATAACCTAACTAGCGATGCACTGAAATCATCTAAAATAAAAATTTTGACTCGACTTTCTGCTTTGCATGTCGGGTTTTTTATTGTCTAAATTAAGTGAAAATATTATACCATTTATCGATCGTTGCAATAGTTTAAATACTCGCATTGTGTGCATTGGGACGGTGTTGCCGGGCTATCTGGCATATAAGAATTATCTAAATCAAATAAAATTTTATCTCTAATTGTTATTACTTGTTGGATGCGCTCTTTAGCAAAATTTATCTGATGGGTTTTGCCTTTGTTTTCATATAAGATAAATCCTGTTTGACAAGGAAAGCCATATTTTTCTTGTAATAACATGCCATAAGCTGTAAGTTGCAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTTGCTGGTTTTTTAGGTTATGATGTGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //