Array 1 187644-192353 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCFE01000023.1 Streptococcus ruminantium strain DTK360, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 187644 36 100.0 30 .................................... CTTTTTCCTTTAAATCTCCCGGTAAAAAGC 187710 36 100.0 30 .................................... CGTGTCATGAATCAGCTACTAACATTTATC 187776 36 100.0 30 .................................... GTCTTTTGATTAGTATTTTTCTGCTTTAGT 187842 36 100.0 30 .................................... TTCAAACCAAGTTCATGTGGGGTTGTTAGC 187908 36 100.0 29 .................................... AAAATCAGTTTTAGAGCTCAAATCCCCGT 187973 36 100.0 30 .................................... GCAGAATAAATGAATGTAGTGTAGATAAGG 188039 36 100.0 30 .................................... AGGGTATAAATTGTTTAACCCCAACCCTAA 188105 36 100.0 30 .................................... ATATATAGAAAAAGATGAAAACTATTTAAG 188171 36 100.0 30 .................................... TGACTTTTTAAACATTATTTTATAGGAGCA 188237 36 100.0 30 .................................... AAAAGTGGTAACAGCTAGCCATCAGTCTAC 188303 36 100.0 30 .................................... ATGGCAGTTCGTGCGCTTCCTGAACACAGA 188369 36 100.0 30 .................................... CCTAAACTATTGAAGTATCTTAATAGCGCT 188435 36 100.0 30 .................................... CCTGCATCTCGTTCCTCCTTGTTTCGTGGC 188501 36 100.0 30 .................................... ATCAAGTTGCATTTCAAAACTTCCGGAATC 188567 36 100.0 29 .................................... GAATTTAAACGAATATTTGAATCAGAAGG 188632 36 100.0 30 .................................... GAATGCTTAAAACGTAGTTTAAACAGATAT 188698 36 100.0 30 .................................... CAAAATCAGTTTTAGAGCTCAAATCACCGT 188764 36 100.0 30 .................................... CATGGGATTTTTAGATAGACTACTAAGACG 188830 36 100.0 30 .................................... TGGTCTTTCTGACAATAAATTAAATAGGCT 188896 36 100.0 30 .................................... GGACGTATCAATCATGCTACTGTGCCAACA 188962 36 100.0 30 .................................... ATTGAAATGACAATCCAATTAAACAGGAAC 189028 36 100.0 30 .................................... TCGTAGTTGCTAAGCCCACTATCCGGATAT 189094 36 100.0 30 .................................... AAAAGTGGTAACTGCTAGCCATCAGTCAAC 189160 36 100.0 30 .................................... TTTAAATTATAAAAACGCTTGTCATTTGTA 189226 36 100.0 29 .................................... TCGCTAGGGGTGCGCTTTGATTCTGTTCA 189291 36 100.0 30 .................................... AAAACGATTTTCAGGGGTACCCCAGTGGCT 189357 36 100.0 30 .................................... CCAAGAGAAGGGAAGAACAAAACAATTTAA 189423 36 100.0 29 .................................... ATGTTTAAAGTTACCTGAAAAACCATATA 189488 36 100.0 30 .................................... AAAATTTTATGACACGAACAATAAAAGGTT 189554 36 100.0 30 .................................... ATGGCAGTTCGTGCGCTTCCTGAACACAGA 189620 36 100.0 30 .................................... TCATGGTCGCCCACGCTAATACCATTATTA 189686 36 100.0 30 .................................... ATTCTGTCAAGCTCGCTTTTATTTCTACGT 189752 36 100.0 30 .................................... AACATGGAATAAAGCAAAAGTCATTGCCCG 189818 36 100.0 30 .................................... AAATCCTGACGAGTTCAAGGAGTCTGCTCA 189884 36 100.0 29 .................................... CTACTTTAGAACGTTGGTACAAGCAAACT 189949 36 100.0 30 .................................... CTATTGCCACTCTATTATCAAGCGTAGCCG 190015 36 100.0 30 .................................... TGTAGGAGTCTTTGACGCAATAGCAGAACT 190081 36 100.0 29 .................................... AAATCATTGATGTACTTTTTACCACCAAA 190146 36 100.0 30 .................................... GATACTTTGGTAAATATTGAGGGCTATGAG 190212 36 100.0 29 .................................... ATAATAGCATTTTTTCAACATCTTCATCA 190277 36 100.0 30 .................................... TAGCTATGATATTCTCGAGCAGAACTACTA 190343 36 100.0 30 .................................... CTGCATATGCTTTTTTAGTCAGCTCTTCAT 190409 36 100.0 30 .................................... GCTTGTGTCACTATTCGAAGGGGTGAGTCT 190475 36 100.0 30 .................................... CAGCTCCAGTGAATTTTTCAAAATTGTCAA 190541 36 100.0 30 .................................... TATGCAACACTAAATTCTAGTAGACTTCCT 190607 36 100.0 30 .................................... AACAAGACTATGAAACATAATTTACCACCT 190673 36 100.0 30 .................................... TTTGATTTGATTTAAGCATATCATTTCCAT 190739 36 100.0 30 .................................... TAGAAGACTATGAAACATAGTTGACCACCT 190805 36 100.0 30 .................................... ATTTGAAACAGCTACCTATATGCGCTTTGT 190871 36 100.0 29 .................................... GGTTAGATGTTGGTAGCCCCGTGCTTTCA 190936 36 100.0 30 .................................... CCTTTAATATACCTTTCATATGTTGATTTT 191002 36 100.0 30 .................................... TTATTTGTTTACTTATTTTATATATACATT 191068 36 100.0 29 .................................... TAATTTAATTTGATTTAATTGTATCATTC 191133 36 100.0 30 .................................... TTGTTTCTTTGTCATTGTTGTTCTCCTCTA 191199 36 100.0 30 .................................... TTCTCTGCCCAATCTAAAATATATTGAATA 191265 36 100.0 30 .................................... TCCTGCTTCTCAATATCCTTGTAAGCTCTG 191331 36 100.0 30 .................................... GCAACTTAAAGCCTACTTGTTGAGCTAACA 191397 36 100.0 30 .................................... TAAGGTAGCTAACTCAGTTCAATATAATGG 191463 36 100.0 29 .................................... AAAATTTAATCAGGGTGACACGGTTAACA 191528 36 100.0 29 .................................... TTCTTCAAGTCTAGGCAGTATATTTGCAA 191593 36 100.0 30 .................................... CGCCTGTTCTAATAAAGATTGTCTTCTGTC 191659 36 100.0 30 .................................... AAAATTTGTCGTTTTTATACAAAAGACAAT 191725 36 100.0 30 .................................... CAGGATTGTAAAAGATTGTTACAAGGTTTG 191791 36 100.0 30 .................................... CTGTCTGCAGCAAAATAAAGCAGGGTAGGT 191857 36 100.0 30 .................................... GGCTCATTTTAATTCCTTTATAGTTGTATT 191923 36 100.0 30 .................................... GCTCAACATCTCTGGTCAATCGACCAATCA 191989 36 100.0 29 .................................... AACCTGCACTTTATTTATAAGCCCTCTAA 192054 36 100.0 30 .................................... TGTTGTTAGGTCAGGGCGCGCAGCTCGCCG 192120 36 100.0 30 .................................... AAGCAATATGAGAGTCTTGTACGTGCAGGC 192186 36 100.0 30 .................................... AATTTTGCGGTAAGGTCAAGAAAAAAGTCA 192252 36 97.2 30 ...................................T CGTTGTCAGCTGTAATCGTGATATTCGATT 192318 36 88.9 0 ...............................CCCC. | ========== ====== ====== ====== ==================================== ============================== ================== 72 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Left flank : AAATATGGATGATTATTTGGGCTATTCTTCTTTTACAAGAATCGCTCAACACTTAGAAGTGCTCTGTCGAAAATATCCATATTTTCATGTTATGATATTTCCTTCTCAAGAGGGATATCTATACTTAAATGAAAGCACGATTGAAACGGTGAATATTTTAGCAGATCAAATTGAGCATTATCCAGCACTTGAATTTCTATATGAGCGCTATAAGGTCTCTTATCCTTCCAATAATCCATTAGACAAACAAGAATTTTTGACTTCTCTGCGAAAAGTTAGTTCCTATTTGTTTTGCTCTGAGATAAGCGAAGTGGTTAGTCTGTCATATAGAGATCTACTGACGTTAAAGATCATAAATACCCTTTATCAGTATGATACAAAGCCAAAATTTGAGAAATATTCCTTGTCTGTCTTGGAAGAAAATTATCTTAATACCTAAAGTTGACAAGTATTTTGATAGGGATTATAATTGGAATAAGAGAGTATAAAAATCATTTGAG # Right flank : CCTCTAAGGTCATTGATTTCTTGACCTTGTTTTTGTCTTCTTAAAATGAAGACAAACTTTTTGTTTTGCCCTGAAATGTAATTTTAAAAGGCTTTTGAATGAAAGAAGAAGCGATTTATTTCTCCGTTGAAGATCGCTTTTTTAATGTCGCGATTTCTTTGAAACAACAACTTTAAATTTTTAGTGATCATGTTTTGCTTTTTCTATGATAAAGTAATGAAACTGTTATGCCGTTGTAGTGAGTGTTTTTCAAAATTCTTAGAAAATGATAGAATGTTACCATGACTATATAGATAATAAAATACTTTTGTCTCATAAGGAAAACTATAACAACTTCTCAATACTTTGCGGTCTTTTCCAGTTGTTCTCAGAAAATGCAATAAGTGCCTATAGGATGATCGCTTCTATTTGGCTTATCACTATAGAAAGAATATCATGATCTTATTCGTAGTGTAAAAAAAGAAGTAAACCTTTCTATCTTGTAATGTAAGATAATTTGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACAGTAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //