Array 1 967556-969047 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075137.1 Salmonella enterica strain CFSAN044885 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 967556 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 967617 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 967678 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 967739 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 967800 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 967861 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 967922 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 967983 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 968044 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 968105 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 968166 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 968227 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 968288 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 968349 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 968410 29 100.0 32 ............................. CCCGTGTGCCCTTTACCCTTGCCGTAGTCCAA 968471 29 100.0 32 ............................. ACATTGATTGATACGTGTATCAATCGCTGGTC 968532 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 968593 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 968654 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 968715 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 968776 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 968837 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 968898 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 968959 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 969020 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 985304-986799 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP075137.1 Salmonella enterica strain CFSAN044885 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 985304 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 985365 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 985426 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 985487 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 985548 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 985609 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 985670 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 985731 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 985792 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 985853 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 985914 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 985975 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 986036 29 100.0 33 ............................. GGCCTAGATGATCCGTTGGCGTGGAACGTTAGC 986098 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 986159 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 986220 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 986281 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 986342 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 986403 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 986464 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 986526 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 986587 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 986648 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 986709 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 986770 29 100.0 0 ............................. | A [986797] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //