Array 1 1182207-1182418 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041607.2 Streptomyces sp. S1D4-14 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1182207 29 82.8 32 TC.TC.................C...... GCCAAGCCATCGACGGGGAAGGGGAGTCGGCT 1182268 29 100.0 32 ............................. TCGCGTTTGGTGACGTATGCGCTGATGTATTC 1182329 29 96.6 32 .......................T..... AGCACCGCCGCCGACCCGTCCGCGTGCGGCAC 1182390 29 96.6 0 .................T........... | ========== ====== ====== ====== ============================= ================================ ================== 4 29 94.0 32 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : GACTCCACGGCCGGCGCGGCCTCAAGGCGGGCCAGCCAGGCGCGCACGACGTCATGCAGCGGGGTGAGACTGTAGGAGTGCCGGGAGTCCTCCAGTGCCCGCGACCAGTCCTGCTCGAACGCCGGCACCCAACTCTCAGCCCGGGCACTGACACGGAGCTGAGCGAGCAGCTGCGCGGCCGCGGTCGGCGCGATCGGCGCCGGCGGGACAGCCGCGTGATCGGGCTGGGCACTCATCGCCACCTCCAGGCAGGTCCTGACGCCAACGGTACGCGCGCCCCGCGCCGCCATCCAGACGATCCGTCAAAAACTGCTGGTCACCACCAGCGTCGGGCTGGCCCCGCCCTTCATCGGCTGCCGCCAGCACTGAGGATTACAGCGAGGACAGCGACCAGGGCAGCCACGGTTGCAACGCCGGCAGTGACCGGACCGTTCAGCGACGGACGTCGGTGAACCAGGGAGGACTACGGGCCGCCGGTCGGTCCCGCACAGCTGTACCCG # Right flank : GCCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTCGCCCTCACCGCACACGCCTTGGGGAGCGCAATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCCTCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACC # Questionable array : NO Score: 3.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [2,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGATCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1414383-1413898 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041607.2 Streptomyces sp. S1D4-14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 1414382 29 79.3 32 C..AC......CTG............... GAGGGACGCGATGAGCGGGCCTGCCACGCGCC 1414321 29 96.6 32 .......................A..... TCTTCTGCTACACCGTCGGTTTCGTCCTCCTC 1414260 29 96.6 33 ............................A GGCGGCAGCAAAGCCGCGCGAGTTGAAGCTTCG 1414198 29 96.6 32 ........T.................... CCGGACCTGATCCTTCACGTCCTGCGCGATGC 1414137 29 100.0 32 ............................. CCGCTTCCCAGCATTCGACTCAGCCCGATTCC 1414076 29 100.0 32 ............................. GCCATCACGTCGATGTCGGCGACGGCGGCGTT 1414015 29 96.6 60 .................T........... CCCGGAGAGCTCCTCGCTCCGAAGGGCTGACGCGCGGACGCCCAGGCCCGCTACGTTGTC 1413926 29 65.5 0 .C....A....A..C..CTT..G....GC | ========== ====== ====== ====== ============================= ============================================================ ================== 8 29 91.4 36 GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Left flank : GGAGTCCGGGGATCTCCTCGCCCGGGCCGTAGAAGTGCCGGAACCGCTGCCAGGGGACCTCGTCGTACCTGAACCCGTCCTTGACCTCCCGCGAGATCGCGCCCACGGCCGTCCGTACGTCGCAGTCCGTGCCGACCCACCGTTCCGGCCAGCCAGCCCAACGGTCATCGTCCATGGCTTGGCCTTCCAGTTCACCGACAGCATCCGAACCCCGGGAGTTTAACGACCGGTGATCAAGAGGCGGACCGCTTCTGCCGCACTCCGGTGGCACCGCACCACAGCGACGTCATTTCTCGTTCTCGTGAGCATCTGCAGCACTCAAGATCGCCATCTGCTGTCCAAACGCTGCTACTTCACGTGAACGAAGCCACCGGCCGGCTCACCCCCGCCTGCGCAGGGAGGACCGAAGAACGAAACGGCAAGAATTCCGGGACGACGGCTCACCCCCGCCTGCGCGGGGAGGACAGGGTCTTGGGAGGATCACTCTTTGTACCCGGCGG # Right flank : AATGAAGGCCATCTGGACACTCCTCACCCTGCTATTCGGCGTACTCACGCTCGGAGCCATTGCCAACGCCATCCAGTCGCTGACGGGCGCTGGAGCATCCGGCGCCCACAACAGCTACAGCATCAGCACCGGCATCATCGACGGCGCCCTGCAGCTCATCTTTATCGCGCTTCTCGCGCTTGCCACCAGAGCCTGCTATCGGCGAGCCTCACGCGGCAACCAGCCCCGCCCCGGCGCCGACAGGCGACCCTGGGAACGCTGACAACACAGCGCCCGCCCCAAGTTGGCTCGGGCGCTACGCGAGTTCCGGACCATCTCCCCAACGGTCCATGGTCACAACTGTGTCACCGCCCTCACCCCCCACTCACACTTTCTTCACACCACCCGTTACGGTCACTCCACCACGAACCATCCCTGGGGGGACCATGTCGTACAACCAGCCGCCGCCACCGCCCGGATACGGGCCGCCGGCCGCCCCTGCACAGCAGCCGCCCAGGCCG # Questionable array : NO Score: 5.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.57, 5:0, 6:0.25, 7:-0.19, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCGCAGGCGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 11130986-11130597 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041607.2 Streptomyces sp. S1D4-14 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================================= ================== 11130985 29 82.8 32 ..T.A......TGG............... CTGTCGATCGAGGCCCAGGCCCAGGGCACGTC C [11130979] 11130923 29 96.6 32 .......A..................... GGCTTCAACTTTCCCTGCTGGAGGATCTCGGG 11130862 29 100.0 32 ............................. AACACCCGGGGCCGTGACCCCGTAGACAGGTG 11130801 29 93.1 33 .............G.........A..... GCAAGGAGTCGGTCACCGTCACCCTGTCGCAAT 11130739 27 82.8 87 ..T........A......-..C...-... TCCTTGATATCGAGCGTGAGTTCCCCGTCTGTGTTCTCCTTCCTCAGCGGCGGAGGTGCCATTGGCGAGCATCTGCCCGTCGACGTC 11130625 29 79.3 0 ...........CG........T....AGT | ========== ====== ====== ====== ============================= ======================================================================================= ================== 6 29 89.1 43 GTGCTCTCCGCGCCAGCGGAGGTGGGTCG # Left flank : TCGACGCCGAGGGCATCGATATGGGCCCGTCCCCGGTGGACGCCGCGCTCGCCGCCGACCTGGTCCTGCCGATCGAGGAGCTCGAGCTCACCGTTCGTTCGTACAACTGCCTCAAGCGTGAGGGCGTCCACTCCGTGGGTGAGCTCGTCGCCCGCTCCGAGGCCGACCTCCTGGACATCCGCAACTTCGGTGCGAAGTCCATCGACGAGGTCAAGGCGAAGCTGGCCGGCATGGGCCTGGGCCTCAAGGACAGCCCGCCCGGATTCGACCCGACCGCCGCCGCACTCGGTGCGGACGACGGCGCGGACGCGGGTTTCGTGGAGACCGAGCAATACTGAACGCTGCGCTGCGCCGGTCGTAGAGACGCTTCGCGCACCGGCTCACCTCCGCTCGCGCGGAGAGCACGCGTACCTGGACCGCGTCTTCTGGGACCCGGTCGGTTCGCCTCCGCTCACGCGGAGAGCACCGCTGGTTCTTCACCGGCGCCCGCTCGGTCGGCG # Right flank : CCGCTGCTCTGCTCAACGACGAGATTCGTCTCCCTCGCCGCACGCACCGAGCCGTGCCATCAAGCGACCGGGTGCGTCGGCAAGCATGTTGTTGAGCTGCTGGACGCCCGGGAGCTGGTCTGGATCTCGTGTCCGCGGCCAAGATCCGGGCCATTCCCGGAGCAAGTCGCCAACCGCTGCCGACAACGCTCCCGTCTCCGCAGGTCAGAGCAGGCGCCTCGCGTGTATCACCATGAGACGCGGTGGCCTCCGGGATGCACGGGGCAGGCACAGGGCGCAGAGACATCACCGCCCTCCTTGTCTCCCAGCGAGACGGAACCCAACCGGCACCAGACTGCCCGACCAAACAAGATCACCAAAGGCAGTCGCCGAATCCGCCAAGACCGCGTCGGAGTGGACCACGGCGGCACCATCCATGTGGACAAATACGATCAGGCCCTGAAAGCCGCGCATCAGGCCGGCTTCCCCCTGTTCTGCAAACCGGCCTCACTGCCTGGACC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.45, 5:-1.5, 6:0.25, 7:-0.97, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCTCCGCGCCAGCGGAGGTGGGTCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCTCCGCGCGAGCGGAGGTGGGTCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //