Array 1 2933052-2931502 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CM001471.1 Salmonella enterica subsp. houtenae str. ATCC BAA-1581 chromosome, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
   2933051	    29	 100.0	    32	.............................	GAAAGGTTAATTGCCTATGGCTTGATTTTACT	
   2932990	    29	 100.0	    32	.............................	GGTATTTATTATGACTTGTGGCAAGGATTATT	
   2932929	    29	  96.6	    32	............................T	TCCAGCAACTTCAGCGTATCGGGGCTGAAGCC	
   2932868	    29	 100.0	    32	.............................	CCCTCCAGCGCGTCCATACTTCCTCGGCCTTT	
   2932807	    29	 100.0	    32	.............................	TTTCCTCGGAAAATACTTCTTCCGGTGGCCGC	
   2932746	    29	 100.0	    32	.............................	ATAAATTTGGCACCGGGAAAAACGGGTTTACC	
   2932685	    29	 100.0	    32	.............................	CCGTTTGCCACGCCTGAATGGTGTAAAGACGC	
   2932624	    29	 100.0	    32	.............................	GTTCATCACTAAAAGGCTTAATCGATGAAAGA	
   2932563	    29	 100.0	    32	.............................	TTTCCGGTCTTGCGGAATTTCCCATTATAGGA	
   2932502	    29	 100.0	    32	.............................	TTCGATAGTGATCGCATGGTTGGCGGCAGGCT	
   2932441	    29	 100.0	    32	.............................	AATACACCCCTGTGAATGCTCTGGCTAGTTCC	
   2932380	    29	 100.0	    32	.............................	CAGTTCGACCAACTTTTTGAGCAGTACGACGC	
   2932319	    29	 100.0	    32	.............................	CAATTGCTGGTGGTCGGGAGCATGAATTCAGA	
   2932258	    29	 100.0	    32	.............................	GCAATGAAGGGGCAAACATTACTGGAGACTGA	
   2932197	    29	 100.0	    32	.............................	CGACTTCATGGATGCGCAAGACAGTGCCATTG	
   2932136	    29	 100.0	    32	.............................	GACGAGGCGGTCGCTCTTGGGGAGGGGTGCGC	
   2932075	    29	 100.0	    32	.............................	CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA	
   2932014	    29	 100.0	    32	.............................	AGTTGCAGTGGTGTATTAATATTGCAATGTCA	
   2931953	    29	 100.0	    32	.............................	ATTTGAAATATGAACTGGATGAAGAATATCGG	
   2931892	    29	 100.0	    28	.............................	TAATTAATTAAGAAAATGCCTGTAAGCC    	
   2931835	    29	 100.0	    32	.............................	CGTGTAAACCGCCGTGAGCGTGCGCCTCATAA	
   2931774	    29	 100.0	    32	.............................	AGTTGCAGTGGTGTATTAATATTGCAATGTCA	
   2931713	    29	 100.0	    32	.............................	ATTTGAAATATGAACTGGATGAAGAATATCGG	
   2931652	    29	 100.0	    32	.............................	ATGGCGCACATGGCCCGCCAGTAGTCGGCGTA	
   2931591	    29	 100.0	    32	.............................	GATCTGTCCGGTATGGTTATTGTCTGCGGATA	
   2931530	    29	  89.7	     0	............T..............GT	|                               	
==========	======	======	======	=============================	================================	==================
        26	    29	  99.5	    32	GAGTTCCCCGCGCCAGCGGGGATAAACCG	                                	       

# Left flank :   CTGATTGAAGAGGTCCTTGCCGCCGGAGAAATCCAGCCGCCGTCTCCTCCTGAAGATGCGCAGCCCATTGCGATTCCACTTCCTGTTTCTCTGGGAGATTCAGGCCATCGGAGTAGCTAACGATGAGTATGTTGGTTGTTGTGACGGAAAATGTACCGCCACGTCTGCGAGGCAGGCTGGCCGTCTGGTTACTGGAAATTCGCGCTGGTGTTTATGTTGGCGATGTTTCAACAAAGATCCGCGAGATGATATGGCAGCAGATCTCCGTTCTGGCTGAGGGCGGGAATGTTGTGATGGCATGGGCGACGAACACTGAATCAGGGTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTGGATCTTGATGGATTGCGATTAGTGTCTTTTCTGCCTGTTGTAAATCAATAAGTTAGCGATCTTTAAAAATACGGAAAAGTTGGTAGATTTTGGTATGCTAAAAAAAGCCTTTTAATTCAGTTGGGTATATTTAGA
# Right flank :  TTTTCACCAGCAGGTCAGGACGTTTTTTCTGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCCAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCATGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATATCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAAGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GAGTTCCCCGCGCCAGCGGGGATAAACCG
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.00,-13.50] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [48.3-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,5.92   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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