Array 1 11694-15750 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQV01000035.1 Bacillus subtilis strain DE0224 NODE_35_length_45921_cov_52.322757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 11694 32 100.0 34 ................................ TATTTATCCATCTACTACAAAATTGGAAGTAGGA 11760 32 100.0 33 ................................ CAATTTTGATTGGGGAGGTATTATACTAGATAG 11825 32 100.0 34 ................................ CAACCAAATCAAGGAAACGTTATGAATAGATTTC 11891 32 100.0 33 ................................ GCTCGTTACCGCTACATTGTAAGGTGGGTCTGT 11956 32 100.0 34 ................................ GCTAGGCTATGCGGAGGCTCACGGTTTGCTGTCG 12022 32 100.0 33 ................................ CGCCCGTAGCCTCAAACCAACTTAGCGCATCTA 12087 32 100.0 34 ................................ AAGAAGACCGGTGCGATGGTTACGGCGGCGGGCG 12153 32 100.0 33 ................................ GACGCCGAAGGAAATATGAAATCAATGCCGGAA 12218 32 100.0 34 ................................ GAATCTATTATCGGAGAATCTAGCGAATGGACTA 12284 32 100.0 34 ................................ CACTTGGAACTTGGTGAGATGGAATGTTAATATA 12350 32 100.0 33 ................................ GAAAAAGGGATTTATCCGTAAAGCCGTATGGAA 12415 32 100.0 35 ................................ GACGAGGTGCGGAGCTAATCCTTTATTTTTCGACG 12482 32 100.0 35 ................................ TCTTTATTCACATTTGTTAGCGCGTGAAAAACGGT 12549 32 100.0 34 ................................ GTAAGGCAAGTCGCAAAGTATCATATCGACCGAG 12615 32 100.0 35 ................................ ACGTAGTCGATAAAGTAGGCGCGGACTGCCTCCCT 12682 32 100.0 33 ................................ TATGGCATAGCCCTTGCCCAACGGAATCATTTT 12747 32 100.0 35 ................................ TGTCCGTTTTTCTTCTATTTTTGCAAGCGAAGGAA 12814 32 100.0 33 ................................ TTGGTGCTGATTGTTATGCTTGTGCAAGTGATT 12879 32 100.0 34 ................................ CCACTTGATTTCCACCTATAAATTACAGTTATCC 12945 32 100.0 35 ................................ CTAAAAAGAATGGTAAAACATTATTGGCGGTCGGT 13012 32 100.0 36 ................................ AGCAAGATGCCAGTACCAAGCATCATCCCCAAATAC 13080 32 100.0 36 ................................ TTGTACTAACCGTGTCGGCTTCCGTATTTGGAACTT 13148 32 100.0 33 ................................ TGATTTGGTGGTTTTTATTTCAACACCATCTGA 13213 32 100.0 34 ................................ GGGATATGATATAGGGACAGGTGGTAATGCAGGT 13279 32 100.0 34 ................................ TGTCGTTAACTCTTCGCCGTCTTTCGTGAGTATC 13345 32 100.0 35 ................................ AAAGTAGAGGATGACTTGGGAAATACGCTGATATT 13412 32 100.0 35 ................................ CTTTTCCATGTCCGTTACGGATACACCCCTCAACC 13479 32 100.0 34 ................................ AATTAAGAAAGACATTTTTATTTAGGGGAGAGAA 13545 32 100.0 35 ................................ GATGATGGATAGCCCTTCATTTGCGATATAAAAAA 13612 32 100.0 33 ................................ AAACGATAGCCCCGAAGCGTTAGCTTGTACGAC 13677 32 100.0 34 ................................ GCTCCGAAAATGGCAACGGATTATAGCCCGCCAA 13743 32 100.0 34 ................................ GAGTGCCTCACGGTCTACCTCCTGCGCCAAGCGA 13809 32 100.0 35 ................................ CATGTCGCTTACACTTACACCACGTAGCCAAGCAT 13876 32 100.0 33 ................................ TGGACCGGAAAGTCCGCGACTCGAATGGATGCT 13941 32 100.0 33 ................................ GACGGACGCCGTTACCTCGGCTTATCGGCTCCG 14006 32 100.0 35 ................................ ACCCCTTCCACTTATATCCGAATATGAACGCTCCC 14073 32 100.0 34 ................................ CCAATCGCCTCGGATTAGAGCCATGATCGTGTCG 14139 32 100.0 33 ................................ GATAACCGGACGCAAGGCATCTCCGTCGACATA 14204 32 100.0 34 ................................ CCAAATATTTACAAGTATGCCCTTTATCGATTCC 14270 32 100.0 34 ................................ CGGATGCGCAAGTCGACCTTAAATTCGACGGCTA 14336 32 100.0 33 ................................ ACGTGTAATTATTTACTCGAAAAAACTAAATAC 14401 32 100.0 34 ................................ TGACAATTGATGCGCCGGACCCGCAAACATTTCC 14467 32 100.0 33 ................................ GATCATCTCCTCCCATAATCCTATTTCTACATG 14532 32 100.0 33 ................................ GGAACTGGTTGAACTATACCAAAAATCTACCCA 14597 32 100.0 35 ................................ ACAACATCCTCAAATTCGTCAATTACATCAGCTGT 14664 32 100.0 34 ................................ CGTATCCTATAACTTTTAACTTTTTAGAAGATAC 14730 32 100.0 34 ................................ TTAAAGAGTGGGGAGTAGTCATCCTTGGGTTGAT 14796 32 100.0 34 ................................ GTGATCGTGAAGGCGACTTACAACTTTACGTCAT 14862 32 100.0 34 ................................ CAGAAATGGACCATCCCCGTACCCAGCGTCCTTT 14928 32 100.0 35 ................................ ACCCCCAAGAAATATAGGAAGTAAGGATCTGTCTT 14995 32 100.0 34 ................................ TGTTTCAAAGGAAATTGATCTTTCCAATGATGAA 15061 32 100.0 35 ................................ CCCTCTTGATCAATAATCCACTTCTTCCCATCGTA 15128 32 100.0 34 ................................ TGATACAAATATTCGGAAGAGGACATTTATCATT 15194 32 100.0 33 ................................ AACGAACTATCGTATAAATATGAAGCTATGGTC 15259 32 100.0 34 ................................ AAAAAAACCGAAGCTGAATGGTATAACTACCACC 15325 32 100.0 35 ................................ CTCTCTTTTGTTTGTTTAAATAGCTGATTCCCAAA 15392 32 100.0 33 ................................ ACAACGTTACAGCTGACTTTATTTTAGGCAGAA 15457 32 100.0 35 ................................ TTAGCCTTTGCATCCGCAGCTGTTGTATAACCACC 15524 32 100.0 33 ................................ AAAGCTTTATACGAAATAGCAACTATGCCAGAA 15589 32 100.0 34 ................................ CCCTCGGTCCTGGAGGACAATCAATGCCGTTATT 15655 32 100.0 33 ................................ GCTAATCAAATAGCTTTCCTAGAGTATACTAGC 15720 31 78.1 0 .....C..........A...A..A.A.-.G.. | ========== ====== ====== ====== ================================ ==================================== ================== 62 32 99.6 34 GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Left flank : CTTAGAGCGAGATGAAATGGGGGCAATTCATTCGAGGGAATAGAGATCCCTAATTGTAATTTAAATAGGATTGCTCTCTATTAAGGAAGCGAAGGAAGGGTAGAGCACCTGTAAAAAAGATTTTTAGGAAGTAGTAGGGGAAATTTATTTTATAAGTTTGGCCTGACCAATTTTTAAAAAACATACATATGCAAGCTTTCAATATGATGAGGCTGCTAACTAAAAATCTCCCCATATAAAATAACTAAAGATGCTAAACTTTTTTATTTTAATGTATAATAGTAGAAACAATATTATTAAGAAGGGGGGCAAGTCCATATTAATAGAACAAGTGCGAACCTCAAGTGCACATGAATATATTGGGAGATTCGCACCTGAATTTACATCTTATTTTGTTCGTTTTTTAACTTTTGAATTAATATTTGGCTTTAAACAATTAAGAAATAGTGCGGTTTAGGCAGAAAACACCTTATATGAACCTTCTTTTGCCTGAAATCGCT # Right flank : TTTGTAGTGATAAAAATTTAAAGAGTATTACTCTAGACTTTTCGAACTTTTGGTATTTCGCAAATAATTCCAAGTCAGCCCTAAGATAAACTAGTACTTGCTGGTTAATATCTCAGGATTTTTTTGTTTCAAGTTTTATGTACGGTTCAAGGAACCTTTAGGTAATATCATCAAGAAGATAAGAAAAAAATTTTAATTATTTTGGAGGATTTTGTAAAAAGGTGTAGAACTATAGATATAGTATAATATTCCCATGTTGATGAGGTGAGGAAATAAATGGATTATATTGCACATATTCGAGAGATTGATAAACAAATACAAACTGTTGAGGAGCACCTATTAGGTGTAAAAAAATTAGCAGAAGAATACGGAGAGAAAATGGGTGTAAAGCATCTTGCTGGACTTGCGGGTATGCTCCATGATCTGGGGAAATATACGAACGAGTTTCGAGACTATATCATAAAAGCAGTTCATGAACCAGAAAATGCGCCAAAGAGGGG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTACTTAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 24482-27813 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQV01000035.1 Bacillus subtilis strain DE0224 NODE_35_length_45921_cov_52.322757, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 24482 32 100.0 34 ................................ CATCGGCGTAAGTTCGACGTATGGCAATCGCGCC 24548 32 100.0 33 ................................ AGTGCGATAATATTTGCGACATATGGCTTTTTA 24613 32 100.0 34 ................................ AATTGCTAAACAGAATTGGTGAAGGAAAAGAAAA 24679 32 100.0 33 ................................ ATAACTCACCACATAGGCATAATATCTTGTCTG 24744 32 100.0 34 ................................ CCTTTTACTAATGAGGTAAAACAGAAAGAACCAT 24810 32 100.0 33 ................................ CACAGATTCCAAAAACTCTGTTAAATCTGATAC 24875 32 100.0 34 ................................ CCTGTAATGACAATATTATTTATATTTGTTACAA 24941 32 100.0 33 ................................ TGAATTGGTCACACCTCTTAGCAACATGGTTAA 25006 32 100.0 35 ................................ ATATTATGCTGGAACTGAACAGAAACGAAAATGCA 25073 32 100.0 33 ................................ GTATAATGATCATAAACTAGATAAAAGCGCCGA 25138 32 100.0 35 ................................ TTTGAACAAAAATATCAATTTACTAGTAAGATTTT 25205 32 100.0 33 ................................ TATCGGACGATATACAACTGTTTCTGCTTTAAA 25270 32 100.0 35 ................................ GTTATGAAAACGGCGTGTTAGTTGGTGAGATTGAG 25337 32 100.0 34 ................................ GCCCTCCGCTTAATCTCGCTTGATTCTAGCGCTT 25403 32 100.0 33 ................................ GTCCTGTGCCTCGCGCATAAATTCGATGTCTGC 25468 32 100.0 33 ................................ GATGATACAAAAGGCAGGATTGGGCTACGTATT 25533 32 100.0 34 ................................ ACAGGCTCCGCCGGATTAGACTCGATAACGCCGT 25599 32 100.0 33 ................................ GCCAAAATTAGAGAGGAACACGTAAGGCGATTC 25664 32 100.0 34 ................................ CTCCTAATTTTCGCAAGGGAGCGAAATGTTTATT 25730 32 100.0 35 ................................ ATCGAATATTAAAGAACTTCGATATATGTATCTAA 25797 32 100.0 35 ................................ TACCAGCTCCCTAATTGAGACAGGAAACTTATCTT 25864 32 100.0 35 ................................ ATCAATTGATTGTGCTTAGCTGCTAACTGGCCAGT 25931 32 100.0 36 ................................ ATCGTCTTCCTCATCATCTTTGTCATCGTCCTTGTC 25999 32 100.0 33 ................................ CTAAAAAGAATGGTAAAACATTATTGGCGGTCG 26064 32 100.0 33 ................................ ACAGATAACCCATTATTCATATATTGCACCTTG 26129 32 100.0 34 ................................ CACCATTTGGTGAGTATAAAATAGTGACACATCA 26195 32 100.0 34 ................................ GTTATGAGGACGGAAAGTTAGTTGGTGAAATCGA 26261 32 100.0 33 ................................ AAAATCGGAAACACAGAAGCGAAGCTTAAATTT 26326 32 100.0 34 ................................ TCCAAATGCGGAATAGAGCTGTTAGCACGAAAGA 26392 32 100.0 34 ................................ CTTGTGTGTTTCCTTTCCCATTTGGCCCATCAGA 26458 32 100.0 34 ................................ ACATTAAGTGACATCAAATAAGGAGGGTTTATCA 26524 32 100.0 34 ................................ CGTAAGGCTCAACGGCAGTTGGAACTTGCAGGAT 26590 32 100.0 34 ................................ GTTGATTATTCCTATTTTAGCTTATCTAGGCTAC 26656 32 100.0 34 ................................ ACACCTCAATTTTGTCCGAGTTAAACCGTTTTGT 26722 32 100.0 33 ................................ TTAAATAACCTAAAAGAATATAAAAACCTTAAA 26787 32 100.0 33 ................................ TCTTTCAAAACGGCAAATCATCATCCTGTATAT 26852 32 100.0 34 ................................ GGTAATAAAGTGAGTGCTTGTATTTCTTAATTCA 26918 32 100.0 34 ................................ TGGCGATGTGCAAGCCATTTTACGACAGGCTAAC 26984 32 100.0 33 ................................ TGTTAATCCCATGTTTAGAGCTCCCATGCTTAT 27049 32 100.0 35 ................................ TTAAATTGAAAAGTTGGTGATTAAATGCCAATTAA 27116 32 100.0 34 ................................ TCCCTAACAAGCCCTCGACCGTATCCTCAACTAA 27182 32 100.0 34 ................................ GCGAAGAAAAAACTCTGCGTCACCACCTCGTCAC 27248 32 100.0 34 ................................ GTCTGTCTCTTCCTGTACGTCCTCCGTGCCATCA 27314 32 100.0 35 ................................ AAAATATGAGGTAATCCACAAAGTCTTCGGTAAGC 27381 32 100.0 34 ................................ TTTACCTTTACGATTCCTAAACGCATTATCTTCT 27447 32 100.0 35 ................................ GCCAAAACAGCTACCGATAAGATTAGGACCCAGAT 27514 32 100.0 35 ................................ AAATTTAATCTAGGCGGTTTGTTGCGAGGAGATAC 27581 32 100.0 34 ................................ ACCAACCTGTACAGTTACGTTCACACCGCCAACC 27647 32 100.0 36 ................................ AAAGTAATGGATCAGGAATTGGATATGATAGCTAAT 27715 32 100.0 35 ................................ ATTGTATGGAATAACCTCTTTCTCAATCTCAACCT 27782 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 51 32 100.0 34 GTCGCACCTTATTCAGGTGCGTGGATTGAAAT # Left flank : TAGATGAGTATCCACCATTTCTTTGGAAGTAGGTGAACAAGATCTTAGTGTTAATTACATATGATGTGAGCACAACTAGTGGCGCGGGAAGAAAGAGACTTCGCAAAGTATCAAAGACTTGTCAAAATTATGGACAACGAGTTCAAAATTCAGTGTTTGAATGTGTCGTAGATGCTGCACAATATGCAACTTTAAAATTTGAACTAGCTACTATTATTGATGAAAATGAAGATAGTCTTCGTTTTTATCGGCTAGGAAATAATTATAAGACCAAAGTTGAACATATTGGAGTGAAAGAATCAATTGATATCGAAGGACCTTTGTTTTTTTAGTGCGAATGGGATGTGCACATAAATCTCCTAGGGGATTCGCACCTCTTTTTAAAGCTTTATTTGAAGTTATTCTAAAGTGCCTATTGAAGACTGTTTAATATTTAATAAAAAGTAATGCGATTTCGAAAAAAAATAGCATAATTATTAGCTTTTTTACCGAAAATCGCT # Right flank : TAAATATCACAACAACAAGAAAAAGCTTGATAAATACAAAAGCATAAAACCATTTAAAAGATAGTTTGAATTAGTATAATGAAGTTAAATAAAGATACAGAAATGTTTGGTACAAGGTGGGAAATAACGGAATGGATATTAGAGAAAAAATGCACAGTGGCAAAATTTATTGCTGCAATGATGAAGACCTATTAAAAGAACAAACAAAATGCTTAGAAGTACTATATGATTTTAATCAAACACGACCTTCAGAAGGAGAAAAAAGAAAAGAGATTTTACAGAAATTGTTTGCTGAGGTAGGAGCCAATGTGCATATTGAGCCACCTCTTCATGCAAACTGGGGTCGATTCACACATGTAGGAGATGATGTCTACGCCAATTTTAATTTAACATTGGTCGACGATACGGACATTCATATTGGCAACAACGTTTTAATCGGTCCGAATGTAACGATTGATGCAGGAACGCATCCAATCCATCCAGAATTGCGACGAAAGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATTCAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.30,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3606-1554 **** Predicted by CRISPRDetect 2.4 *** >NZ_VTQV01000048.1 Bacillus subtilis strain DE0224 NODE_48_length_29669_cov_56.290921, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3605 33 100.0 35 ................................. CACCTCGTTATACGTATTTAAAACGGCAAATCATC 3537 33 100.0 35 ................................. CTTGTCAAAAGTCTTTTTAATCTCAGCCAGTAGGT 3469 33 100.0 35 ................................. AGGAAGCCGTGTCAAGTACTTTTTTTACAAATCCG 3401 33 100.0 33 ................................. TCTTTTGAATCAAGAATCCCACTAATCATCTCC 3335 33 100.0 34 ................................. CGTCAAATTAGACGGTGACCGTGCGCTCGATTGT 3268 33 100.0 35 ................................. GTCATTTGCTAATCGCGCTAAACTTGCGGCACAGC 3200 33 100.0 33 ................................. GATGATACAAAAGGCAGGATTGGGCTACGTATT 3134 33 100.0 34 ................................. AACGACATTCCAGTAAAGGAGGCGATAGCTTGAC 3067 33 100.0 34 ................................. CTCACAAGTATGGAACAATAACGCATGATTTTCG 3000 33 100.0 35 ................................. CCAATGCGCTCCTTCGACGTCAAACTTAATGCCGC 2932 33 100.0 34 ................................. CGTTTAGAAAATGGATTTTACGAATTACAAAATC 2865 33 100.0 34 ................................. GAGAAATTCGTAAGTTAATTAATCGCGCAGCCAA 2798 33 100.0 34 ................................. TATATTGACGGTTGGCAGACGACATATTACTACG 2731 33 100.0 34 ................................. GGATTTGATAAGTAGTAAGCCGATGATCCTACGT 2664 33 100.0 33 ................................. TTTTCAAGGCATCACCAAAAGCCAACTCTTTAA 2598 33 100.0 34 ................................. TAAGAAAGAAAGAAGCTCTTGCTATCGAAAAAGA 2531 33 100.0 36 ................................. ATGAGGTATCTCTTTTTAAAATACTCGCTACACTCC 2462 33 100.0 34 ................................. ACGATTGTGAAGCGACAATAAAGCGCGAGCAAGA 2395 33 100.0 35 ................................. CGGAACGGCTTGGACACGCTGACATCCGGACTACA 2327 33 100.0 34 ................................. TATCTAGACGCATTAGGATGACCGAAACACCAAG 2260 33 100.0 35 ................................. ACCATTGAGCTAGTACCGCAATTCGGCTTTGCTAC 2192 33 100.0 35 ................................. GTGGGCCTTTTCGTATCGCTTGAGGTCTAACTCGT 2124 33 100.0 35 ................................. ATGGGGTTTATGGGTCGAATGTCTAGAAAATATCC 2056 33 100.0 35 ................................. AGTTGGAGATAACGCACAAGCAAAAGGGGACACAT 1988 33 100.0 34 ................................. TTCAATGGCATCATTTAGGGATTCAAGCGTATCC 1921 33 100.0 34 ................................. CGGGAATGGCGAAGATGGAGGATATATCATTCCA 1854 33 100.0 35 ................................. ACGCAAAAGTACGGCAGTAAATCGCAGGCAATTTA 1786 33 100.0 35 ................................. CAATGGGGAAACGACATCAAGTGGGATGAGCACTT 1718 33 100.0 33 ................................. CAAATATTTCTTCCACTTGCTTTTTAGTCATAC 1652 33 100.0 33 ................................. CTCGACATTCACTCGCCATCCCGCGTAATGATG 1586 33 90.9 0 ..................A............GC | ========== ====== ====== ====== ================================= ==================================== ================== 31 33 99.7 34 GTCACTCCCTGTATTGGGGGTGTGGATTGAAAT # Left flank : CATGTAAAAAAGCGTTATATCACTATCGCACTTAATACAAGTGCGTGGATTGAAATTCCGCTACCTTCATTCCTCAACTGAACCCTTAAATCGCACTTAATACAAGTGCGTGGATTGAAATTAAGTTATTGTTTAATACATACGGAAATGCACCTTCTCACTTACTATTTGATAAAATTAATATTAAGAAAAAGGACGAAGTTAACGTTCCACGTTCTTCTACAGATTATCAGGTTTTAATTGATAGAGAACTACCAAATGGAGTAACATTACATGAGATTGTTACGTTTTGATACAATTGAAAAGAAGTTATGGTGAATCTAAGAAAAAAGAAAAGCAAGGAGTGCGAACGTCAAGTGAACATAGAAACACCGTGAGGTTCGCACTCAAATATCAATCATTTTACCTAAATACTGTTAGGTGAAAGGACTGAATAGACAACTTCAAGAAGTTTTTGACTATATAGAGTATGGTGAAATTAATTCTATCAATATATCGCA # Right flank : CAAATCTAGCAATACGAAACACGTTATCAATAACGTAAAAGCTGCAGATATTCAGCTTGCAGAAGAAGATCTAGCCAAAATAGATTCTGTCTATCCAGAACCAAGTGTTAGCGAGCCACTAGCTTTGTGGTGAGGAAATTATAAAGGAAATAGTTCCTGTCTGGAGTCTCAATAAAGATAGTTTTTCGGAGTAGGTTTTTCTACTCTATTTTTTTATATGAATGAGAAAAAAGAATTAAATTCACCTCACATTATGACAATCCATGCTCACTAATTCACATAATTGTAAAAGTTATCATAGTTTATTTTCAAATTATACCGGTATAATATAGGTATAAGTCCATTTGTTATATCATAATACGAGGAGAGATTTCTATGACAAAACGTTTTAATGGGAAGACAGTCATTGTAACCGGTGGAGCAAGTGGAATTGGCGAAGCTACCGTTATTGAGTTTGCTAAAGAAGGGGCAAAAGTTGTTATTTCAGATATGTCAGACAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTCCCTGTATTGGGGGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: R [matched GTCACTCTCTGTATAGGGAGTGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-5.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //