Array 1 1315-2086 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000014.1 Pyrobaculum aerophilum strain YKB31 NODE_14_length_49402_cov_13.4775_ID_4323, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 1315 25 100.0 43 ......................... CTGCAACATAAATGGCAAATGTGGCACGAGGGTTTTGTCGCTT 1383 25 100.0 41 ......................... TAGCGTCATAGCGTCACCACGACGACGTTGTTGACTACGCG 1449 25 100.0 44 ......................... TAACTCGATATCCCCGTCCTCGTCTACTTGTTTGCAGTACCTCA 1518 25 100.0 43 ......................... GCAGAAGAATATACAGCCCTAAGTAACGAAGCGGAATCAACAA 1586 25 100.0 47 ......................... AACATTTCATTTATCCTAAACCTCAAGTCCTCTACTGCATCCTCTAT 1658 25 100.0 44 ......................... CAGATACTGTAACTGGAACTGAGAAACACGCCTTTGCTAATAAG 1727 25 100.0 43 ......................... GTATTGTTTCCGCTATAGTCTCTAGCGTCGTTATTTGCCATAT 1795 25 100.0 44 ......................... CAGTCGGCTTTGCATGTGATGCAGTAGGGCCCTGCAATGCGGCT 1864 25 100.0 41 ......................... TTTCTCTTATGGCTGAAAATATCATCAATTTTATTAATGAG 1930 25 96.0 39 ...A..................... ACATTAATCAAGGGACAAAGGCGGGCCCTTTACAAATAG 1994 25 96.0 43 ...A..................... GCCTCATTAACGACTGGGCCGTATATCCGCTGCAGTTCTTCCA 2062 25 96.0 0 ................G........ | ========== ====== ====== ====== ========================= =============================================== ================== 12 25 99.0 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : TATAAAGAGCTCTTCGGCGTAGATATCAAGCCCATTGCAGACAGGGCCCCCACGGCGCTTGAAATAGTGGGGATGAGGACTAAGGCCGTCAGAGTGAACATCGGGGACTCCAGGCTGGTCCCAGCCTTTCTGGGCAGGGCTCAACTAGCCGTGTTTGGCAACGTCGACGCTTGGCTCTCCCTTTTAAAACTAGGCGAGAGCGTCGGCGTGGGCATTTCGAGGGCTATTGGATTCGGCAAGTACAAAATAGAAGAAGTAGTCCTCCACGCCTAATTCCCTCCGATATTCACTCCCCCCCCCCTTCCTCTTCACCGCGGCGAAGAACGGCGTTGGGCATTCGCCTTTTTGGCTTTTTGCGGTTGAGATCGTTGCGAAGAACGGCGTGTTCTTCCCCCGGTCGGCGGTATATATGAATGTAAAGCGAGTGGAGAAAGGAGCTAGCCGTACAACAAAAAACCAAAGAAAAACTTAAAAACCCACAGGATCTTTAAACGCAAGCC # Right flank : CAATCCCTTTTACACGTCTCCAGCTCGGCCTTGGCGTTTGCCAACTCCTCAGCCAGTTCTACAATTCTCTCCCCGCCGCGGAGAATAGTGGCGAGTTTTTTCGCACATAATTTTAGCGGCTTCAGACGGCGCTAATTGTGCCATTTTTTTCACTTCCTCCTCGGGCATGTTTTTAAGCAGTAGGGGCATTGAGAGGTGGGCCCACTCCGTAATGAACTGCCACCACTCTATTGTCCTGCCCGTTAATTCTACGTATTTGCTCATCCACTCTAACGCCGCTCTTTCGGGCGAGTGAGCTCCCTCCTCGCCACGTTCCTCCCATACTGTTACTAGCTGGAGGTATTTTCGGCGGCGGACTGGAATTTTATAGTGTCCACCGCCGTAGTGCACTTCTCGTAAAAATCAGTAAGAGTGTACGCGCTGTTTTCAACTGCGCACTTCAAGCCCGCCTCAATGGCCTCTATTTCTTCTTTCGACAAGCCGACTGAAACGGCCAGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 39376-38730 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000013.1 Pyrobaculum aerophilum strain YKB31 NODE_13_length_53607_cov_9.70939_ID_4321, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================= ================== 39375 25 100.0 42 ......................... TGTCGTAGTTGAGTCGTTGCGGTTGCGCAACATGTTGTCCAG 39308 25 100.0 44 ......................... CTTACTGCTACTCCTTCTTGAAACCGCGTCAATAAGTTCCTTTG 39239 25 100.0 44 ......................... AGAGAGATTAAGCGCATATCTATTTCTATGCTAAAGATAAAAAA 39170 25 100.0 43 ......................... ACTATTGATATTTCACTACCTCCGTCCGCCATGTCCGCGATAT 39102 25 100.0 45 ......................... AGGACGGGACTAATGTCCTAGGACAGTCAGCTAATCCAATATCAA 39032 25 100.0 40 ......................... ACTCTGGCAAGAAGAGCCGTCTCGTATCTGGGTCTTCTAG 38967 25 96.0 40 ................T........ TAATGAGCTCTGCTACACCATCACCTGAGTATTAATATCG 38902 25 100.0 41 ......................... TTGATGAGTGGCGGATAGTCGAACGCAATCAGAGAACGCAA 38836 25 92.0 57 .....T....G.............. GTCTCGCAGTGAAACCTCTCTCGTGGGCTCTAAGTAGACGTAGTACGTCCTGCCGAT 38754 25 88.0 0 T.........C...T.......... | ========== ====== ====== ====== ========================= ========================================================= ================== 10 25 97.6 44 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTACACCTCTCCGCCACGTACTTCGCCATTGCCAGCGCCTTTGCCACTGCATAAGCCGCCGCCCTCACGTCCACTGGCTTTGGCAACAGCCTTTTCAACCTCACCGCAATTGAAAGGGGATTTGCGAGATTGCCGAGGAAGAGAGTGTCCCGCGCCCGCCAGCTGAGCTTTAGGTAAAGGCGACGGCCTAACAGCCACATGTAACCCCTAACGCCCCTTATCTCAACCGGGCCTATGTAGAGGTACATGCCCCTCTCCTCCTCCACATTTTAAAACATTTGTTTATATGAATGTAAAGCGTTTACGAAATAGCGCGGCGAAGAACGGCGTTGGGCATGCGCTGTTCTTACATAGTGCCATTATCATTACGGCGAAAAACGGCGTACGCCGTCGGCGGATAGGGAAATATATGAATGTAAAGCGAGTGGAAAAAGGCGCTTGCCGCAAGACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAACGCAAGCC # Right flank : AAAATTGAGAGAGTTTAATAGGCTGAACGGCTTGCGGTCGGGAATCGAAAATAGGGTAGATATCCTGCTAACGAGATATATATTGATGTGTTTTCCGACTGTCAATAATCCTCCATAGTGCTGTAAGCGTATTTTATTACGGCGGTTATGCCCATTACCGTCAGGGATCTCTCCTCGCCCTTATTATCCACAGCGAAGATACCTCTTTGTAAAGTGTATAGGCTATAAAGCCCTATGATCTGGGGGTATAATAATACATCTATAACTAAAGCCACCAATAGTCTCCAGTCCAATGCTTTTAAATTCTTGGGATGTATCTTTTATGGCTCTAGATTTTATAAAAGATGAGTTTCGGCGATATTTCTCGGAGTTAGATCTTTTCAGGAAAATTGGCGTATACTTGGCGCTTCTTTCCAGTTATGGGAATTACATGAATGTCTCCCACGACCCAGAGGCTTTGAGCGAGATAAAGAAAAAACTTGAAAATCTCATTAGAAGTT # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 19888-20041 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000001.1 Pyrobaculum aerophilum strain YKB31 NODE_1_length_124046_cov_12.2363_ID_4297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================== ================== 19888 25 100.0 39 ......................... ATATCAAATAGCAACTCTTTATTTAGAAATTTGCCTCTG 19952 25 100.0 40 ......................... GGCAGGCGGATAGACTCTAGAAACGGCACCCTTTGGTCAA 20017 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ======================================== ================== 3 25 100.0 40 GAAGAATCTACAAAAGAATTGAAAC # Left flank : CATCACGGAACAAGGGCTTGTGAAAAGACGCCACGGCCAAAAAAGCGGCTGAACGCCGCCTTATTCACAAGACAACAGGCCCTAACGGCTTAGGATAGACACGCCGCACGCGTTCTGGCATATCTACGGCATCCAAAACCAGTCACGCATGCATCCATGCTTTACCTCAGTAAAGCTCCATTCAAGTTAAAAATAGCCTAGACACACCTCTCTGCCAAGATTTCAAACCCTTGGATAAGTTTACAGAATAAATTTCAGTTTTTACGGCCTATTTTTTTAGCCTTTACTATTATAAAATTTGGGACTCGAAGCAAATACCCCTCAGCGTTGTCTTTATCTTTTTCTATTGTGTTTTTGTTAATGTTTATCTCTCTACCCAGTGTTGTGGTAAGTGCGCTGTGGCGCCCCGCCGAGATGCCCCAGCCGCCGTGGAGGAAAACAGACGTGAGACGAAAAATTTATAAAGCGAGAAAAACCAACATCCCGAATAAAAACCCACA # Right flank : CAACATGATAACGGCGAATAAGCTGGGGGTTTAAGCTGGCGTTGAGTAATACGCGGGAGTTGATATAAAAACTGACTGCGCTATTCGGAGTCCGCCAAATGTAAATCTGTGGGTGGTGGTTAGAAGCGGGATCGACCTGGCGGGGCGGGGAGGCCTATAGGCCGGCTTTAAAGGCGCCAGGGGTTTAAGCGGTTAAGGCCCTTTGAGCCGTCCCGCAGGCGCCGTGGGGATGCGGGGGAGGAGCGGGGCGCTGTAGTGTCGGGGAGCGTATATAAGCGGGAAAAACACGGTCTACAAGCTCTAAAGGGTAACGCCTTGGCAGTAGCGCGCGACGTAGATGTCGAGTATGTGCGCTAAGTCGTCGTATTTTGCCAGCTTGCGGTAGAGGTTTTTTATCAAGTCGTCTGTGTCGTAACCCAGTTTTTTATACCTGCACGCTCTTATTAAAGTCGCCAATTTGTCTGCAAACGAGACAATCCTGCCCACTAGGTTTGTCTCGT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0 Confidence: HIGH] # Array family : NA // Array 1 3100-3591 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000026.1 Pyrobaculum aerophilum strain YKB31 NODE_26_length_31225_cov_13.3757_ID_4347, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================ ================== 3100 25 100.0 41 ......................... AGATACTGTTGACGTTTACGAGATCATGGTAGAACTGTCAT 3166 25 100.0 41 ......................... CAGTATCATCTTGGCGATGCACCTGGCTGTCTTCGGATTCA 3232 25 100.0 39 ......................... ACATCGTTCATCGTAGCTATCGGTTTCACATCGCCATTA 3296 25 100.0 42 ......................... TTCAACGAATTCCCGCACCTCCGCCTTTTTACACGTCGCCAG 3363 25 100.0 43 ......................... GATATAGTCACCTATCGGCAACACGGCATTGCCGTGCTGTCTG 3431 25 100.0 42 ......................... TCTTCTGGGCCGCCGTGGTACTGCTGGCCATTTACGCAGCAG 3498 25 100.0 44 ......................... CTTAAAAATCTGGGATTATTCAAAATACTCTATTTCTCTCTTTA 3567 25 96.0 0 ........................G | ========== ====== ====== ====== ========================= ============================================ ================== 8 25 99.5 42 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : GCGGCGAGCCGTATGCAACAAGCGGCGCTGGCCGGGCCCGCAACAGATGGCAGTTATTGCGTTAAGGCCTTGCCAATTCCTCCAGACGCTGAGAAAGGCTGCCGATTGTACAGACACATCAAAGGCCTAAGTTACTTAACACGGCGCGGCAATCCGCGCGCTCACTAACGTTGCAGTACTGGTTGGCTGAGTAAACGCTTTCACACGCTACCCATTAGCCGACAACGGCCGGAGATAGGCTTTACCGGCCTAATTCCACGGCCCGTAGATCTAAAAACACGGCGCTCGCCGTTACGCTTACTCCCCCCCCCCCCCCCGGCGAAGAACGGCGTTGGCATTCGCCTTTTTGGCTTTTTGCGGTTGAGATCGTTGCGAAGAACGGCGTACGCGTCGGCGGACAGGGAAATATATGAATGTAAAGTGAGTGTGAAAAGGCGCTTGCCGTACAACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAGCGCATGCC # Right flank : GTCAAAAGTCCTCACGTGCCCCCCGCCGCACTGACGATTGGCGTGGGGCTGAAGTAAAGTTTTTAGATGCGGTTTTTTCTAGTGTTTATGAGGGCTCTTGCTTTACTTCTAGCCGCGTTTTCCCTGGGGGTGTCTGTGGTGGAGGTGGGGTCGGGGTCTGTGGCGGGCGGCTTTGTCTTCTCGGGGGTGGGGCGGGTGGATCTGTTCTACGCCTGCGGCGTGGGTTCTGTGTCTAATTTCGGGGCGTGTCAGGGGGACTGCCTCGGCTTTATTGCGGCGCTTGAGGGGGACTGGCGGAGGCTCAACGTGACTATCGGCGGGAAGCCCGCGGAGGTTTTACACGCCGTGGAGTACCGCGTGAGCGACGCGTACAGGCCGAGGCTTTACGTGGTGGTGTTTAGAGGGCGCGGAGTGGGCGAGGTGAGGGTGGCGGGGCTGGAAACGCCGGAGGCCTACCTCCTGGCCAACTTCGGAGTAGGCAAGCTCCAGGCCTACGAGAT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: F [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 26859-26297 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000026.1 Pyrobaculum aerophilum strain YKB31 NODE_26_length_31225_cov_13.3757_ID_4347, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 26858 24 79.2 43 CG..AAT................. TCTTGTACATAGGCATATGGAGAAAACAGCTGTTGCCGCACTC 26791 24 100.0 42 ........................ CCTCCGGCCTTTTCTGCGCCAGAACCCTGGCATAATTCAGCG 26725 24 100.0 46 ........................ CTACGTCTAAGGTCGGCAAAGTGGCGCTGGGCGCCGCCGCCATCGG 26655 24 100.0 41 ........................ CGAATATAGTGTTGCTGAACCCGTCGTATCAGATACTCACA 26590 24 100.0 39 ........................ CGTCTGTACACATACCTGACAATTGCACCAATCGGCGCG 26527 24 100.0 47 ........................ TTTCAAACAGCTTTTCAGCTAACTCCTTTGCTATACACTCCATATAA 26456 24 100.0 43 ........................ CCTTTTACTAAGTAGTCCTCTCCCAACAGTACATAGTTCTTCT 26389 24 100.0 45 ........................ ATGTGTTCTTTTACGGCACCTTCAACAAGTCGGTGTGTATATCAG 26320 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =============================================== ================== 9 24 97.7 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : GGCGAACTAGACACTCGGATTCGTAATTGCTAAATTTTTAACAAGCAATATAATTCCATGAAAACTAAAGTTCAAGTCGCGATAATAGGCAAACCAACGCCGGCAAGTCCACATTTTTCGCGCGGCGACTTTAAAAGACGTGAAAATCTCGCCTACTCCTTTCACAACCATTGATCCCAATATCGGCGTTGGCTACGTGAGAATTGACGATTGTCCGTGTAAGAGCGTGGCGTGCAACCCGAAAAGCTACGTTGTCGTGGAGGGGGTGTGTTACGCCCCTGTAGAGCTTATTGACGTGGCAGGGCTTGTGCCGGGGGCTTGGCAAGGCAGAGGGCTGGGGAACCAGTTTTTAGACCACTTACGAAGAGCCCCCGTGTTAATTCACGTGGTAGACGCCTCAGGCTCTACTGACGAGGAGGGGAGGCTGGTGAAGCCCGGCTCTCACGACCCGTTAAAGGACGTGGAGTTTCTGGAGAGGGAGGTGGACATGTGGATTGCGT # Right flank : ACGGCGAAGACCAGTCGCTGTGTGAAAGGATGAAGAATAAATGCGTTAAAGTGTTCTTCAGACAAGAATCGGAGAGAAATGTTGAGGTCCGCGCTGGGCTCACTGGCGCGGTTTACGGCCTAGCTTTTATATTTGAAGAAGTAAAAGAAAACAGAAACAGATTGCACCAAGTCTGCGTGGCCGGAAGCGATCCCAGAATTAAAAGAGCTGTTGAGATACTAAGTCTTAAGTGCTATTTTTCAAGGCAGGGCATCGCGGCGTTTATGTTCACCTTGATCTGGTAGTCGTCGCCGTGGGGGCAGAGCTCTGTGTGGCTGGCAAGCAAGCCCGCGTGCGCCACGAAGTTCCTGTTGTCCTCAACACAAGGCTGGGGGTCCTCAAAGGCGTAGGGAAGAAGCTCAGCTAGTTTTGTGCACTGCTTCAGCTTCTTCTCTCTAAGTGCGTTGTACACGGAGTTTAACTCGTGGTGGACTACTTTCCTCGCCGTGGGCGTCAAGACT # Questionable array : NO Score: 9.15 # Score Detail : 1:0, 2:3, 3:3, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,9 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 5282-2156 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000021.1 Pyrobaculum aerophilum strain YKB31 NODE_21_length_36297_cov_9.87561_ID_4337, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 5281 24 100.0 44 ........................ CGGCCCACCGGTGGCTATTCTCTATCAAAACTTTCAACCATCTG 5213 24 100.0 45 ........................ TAATAGAAACCCGCGGCCACTGGGCGCCGCTGTGCGCCATTATTT 5144 24 100.0 41 ........................ ATTAGCCACGCCCCCACGTTGTCCTCACTCATGTAGTACGA 5079 24 100.0 44 ........................ AAACTCAAACTCCCCAAAATCCACCCCTTAAAATAAAACACGGT 5011 24 100.0 43 ........................ TCCCCCGCCACCGCGCGAGTCCGTGCGCCACGCCGCAATTGCG 4944 24 100.0 47 ........................ CTCTAAGCAAATTGCGCGCAGACCTGACAATTAATTGCAACAGGCGG 4873 24 100.0 45 ........................ GGACGGCCCACCGGCCGGCGGCCGTCAGGGCCCGGTACCGGGCCA 4804 24 100.0 43 ........................ TTTCTTATAACTTTTGAGAGCGCAGGAGTTACTATTATACGGT 4737 24 100.0 40 ........................ AGCTGTTACTTGACATGTACGGACTGCCGTACAGAGCGAT 4673 24 100.0 42 ........................ CACCCCAACTGGCGCATACGCCGGCGTGTTGACGGCCGCTGG 4607 24 100.0 46 ........................ TGTAATATCCACGGCGTCACACGGCGAATTATACAAATTTTGTAGA 4537 24 100.0 45 ........................ ATCAACAACAGCATGGGGGTAGCGGTGGCCGCAATATTACACCTA 4468 24 100.0 44 ........................ TCAACGTCTACTCAGCCTCCACCGGCTCCCTCCTGGCCAGCGGC 4400 24 100.0 45 ........................ CTACTTCTTAGCGCCTTCGCTAACGGCATTACGCCGATATGGTAT 4331 24 100.0 42 ........................ ACGGCGACACTAACATAACAGAAGTGCTCAAAGAAATTCTCC 4265 24 100.0 42 ........................ ATTCCCTACGCAATGCGAGGACGACATAATGGCCAGATACGG 4199 24 100.0 45 ........................ AGGAAAGCAGAAAGCCGAGGGACGGCAGGACAAACATTCGCAGAA 4130 24 100.0 45 ........................ CTAACAGCCAGACAATGGTACCCACAATATCACTAGGTGGCACCT 4061 24 100.0 47 ........................ CCACTTAGATTTAGAGCATCATATTGGAGCGGAACGGGGACGGTTGA 3990 24 100.0 44 ........................ CGATAGAAATGTATTACCGTTGCTGTCAATTGTGGCAACCACGA 3922 24 100.0 46 ........................ CACCTAAAGACCTCAACGCGACCGCCATAATAACATAGACGTTCAA 3852 24 100.0 39 ........................ TGATCAAGGACAAACGCGTAGCGCTTTGCGTCTAATAGC 3789 24 100.0 44 ........................ TATTTTAAGCACCGTCCTGCCGTAGCGATCTTTTGCAGCAAGCG 3721 24 100.0 42 ........................ CCACCAGCTACCCCATAACCACTTCAGGCCCTCCTGTATTCT 3655 24 100.0 42 ........................ TTTAGGCCTAGGCGGCTTTCTCTCGCGGTCTATAACAACAGT 3589 24 100.0 41 ........................ CTTACTGATAGTGAACCCGATAGAGAGGCATTGCCGAGGGC 3524 24 100.0 47 ........................ GGGTAGGGCTGGGAATGTCCCAGTGGGCGCGCCAATAAAACCTAGCG 3453 24 100.0 43 ........................ GGCCTTGAAGTGGTGAGGGGCGACCAGGGGATTGGCGTTAGGC 3386 24 100.0 45 ........................ CGACGCGGGACACTCTCACGCCCACGACGTCTCTAATCCTAACAC 3317 24 100.0 40 ........................ GGGTTTGGGTTTTTTGCCCATTGACAGTTTAGTCCGAGAT 3253 24 100.0 42 ........................ GGTGGCGGTTTCAACGCGGCCATCCTCTGGAGCACCCCCACC 3187 24 100.0 38 ........................ TCACGTACGTCCTGCCCGAACGCTTGTACATCTCCATG 3125 24 100.0 41 ........................ CGTTTGAAGCCGCTCTTCAGCTCGATACGGCTAAAAGAGCG 3060 24 100.0 44 ........................ TGCGACTAAGAGAGTGTTAGAAGATATCATAACAGATATGAAGT 2992 24 100.0 43 ........................ AAAACAAAGTACTGAAAATCATCGGCATAAGGACTGCAATAAA 2925 24 100.0 47 ........................ TCATGGGGGGCCAAATTCGCACCCATAGAGTTCACATTAGAAAACCC 2854 24 100.0 41 ........................ ATATAAGATACAAAGGCCTCGGCCTTTTTTAGTAAAGCCTT 2789 24 100.0 43 ........................ CCACAGTATGTTAACACATGCCCGGCCTAAAAATAAACGGTCA 2722 24 100.0 45 ........................ ATGATAGAAATAAGTGCCGATTCAATTAACAGCACTTTTAACTAT 2653 24 100.0 42 ........................ CCTCTACGGCATGGCCATTATACTTTGATTCGTCATAATCCT 2587 24 100.0 44 ........................ GTTGGCAAATATACAGACGTCTATTTGGACAAGTAAAGTGGGTA 2519 24 100.0 46 ........................ ACGTTGATAGTTCATCTCACGGAGACTCCGGCTTTGTCAACTTCAG 2449 24 100.0 45 ........................ ACAGTTGTATCAGTGGCCGCCTTCGCGCTGTGGCTCCACAGCGTG 2380 24 100.0 44 ........................ ACGACCAATACCACAACTACAACTATTACTGTCAGCGCCATTTG 2312 24 100.0 41 ........................ CCTCTAACTCAACCCCCCATGCGTCGGCCAACACTTTGTAC 2247 24 100.0 43 ........................ TCTTGTACATAGGCATATGGAGAAAACAGCTGTTGCCGCACTC 2180 24 83.3 0 ..................G..TGC | G [2164] ========== ====== ====== ====== ======================== =============================================== ================== 47 24 99.6 43 GAATCTCAAAAAGAGGATTGAAAG # Left flank : AACACATATAAAAACACACCGCACGCCCCAGGGGGCGCCAAAGACCGGTTCAATAGAAACTCAACTATCAAATAACCTTTTTCTTGATGAAAAATGTAAAGTAACCGAAATCAAGTGTATAAACTGCTATTTACAACACTGTCTTTTCACACAGCCTCCACAAAGCCCCGATATTAAACAAATACTCTCTATATATTCTATATATTTTTCGGCATTTAAAAATCGTCGTACACAGCTCTCTTTACAAATTCCCATATTTCAACTGTCTTTCCGAGTTAAAAATTGTAAAGAGGGTATCCAATTTATAAAACGTCGTACAGCAACCCGGCGCACCCCGGCGCCGATTTGCAAAAAATGGCTTTCAACCCTCAGCTGCAAGACCCAGCCGTATACTAACAGATACAAACCCCTAAAAACGACACAAGAAAAAACCGACCCCCAAGACAAAACAAAAGGAGAAAAACTTAAAAACCCCCAAAAACACTAATCAAGAACCCCCA # Right flank : GGAAAAATGCGAAGCGCTCCCTTTGGGTATTAGCTCTAATTGCAGATGCCCCATCAAGTAATTGCAGGGGATAAAAGGGATGTGGGTAACTGCCGACCGCGACTCCTTTCCTAGGCTTTTTCTAGAGGGCTATATTCCAGCACCAGGGGCGTTAGAATAAGGAGAGCTCAATTTATTGGCGTTAATTCTTCCGCATTGTAAAGGTAGATGTGCAACCTCCAGCCTCCTAAAATTTCAGCTACTTCAAGATCTCTTTTCCCTATCTCCCTCATTAAACGTAGCGAATGCGCCTTTGAAGTATGTCGTTATGAACGCTTTAGGGGCTTTGGTCAACTTCTTAGACACTTATCTAATATGATAATAAGTCCAGCTCGTTTTTGTCTATTTCCGGTACTCCTAATGTGGTTTCTCTGCGGCCATCTTCTAAGCTTTATTCTCTCTTCACCGAGGAGATATAGGGGACTGTAGCCGTAGGGCTTATAACTCTGCCCTGGCCACTG # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 32836-36261 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000021.1 Pyrobaculum aerophilum strain YKB31 NODE_21_length_36297_cov_9.87561_ID_4337, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =================================================== ================== 32836 24 100.0 51 ........................ TATTGTACTGTAGATGTAGACATTAAGCAAATAAACGCAGTGAGAAAAAAA 32911 24 100.0 43 ........................ CTTATTACATTGCACGTGCCGGAGGAGTGGCTACAGATAATGG 32978 24 100.0 39 ........................ CCGCGCTCGCGCGGCCGTTATGAGGAAGAATATCCTGAC 33041 24 100.0 49 ........................ CTAACGTAAGCGATAAACGGTAGCCTCGTCGCCTCTTCAAGCTTTGCCG 33114 24 100.0 43 ........................ TGTACCAGCAACAGCCGCCCAGCTCTACGTACATCCCCTCCTC 33181 24 100.0 42 ........................ GCGTCTCTTATCGCGAGGTTTTCCAACTTTCGCGAATTTAGA 33247 24 100.0 40 ........................ TCACTAATCCGCTTAACAGCGTCACTAAAGAAGGAAATAA 33311 24 100.0 42 ........................ GAATCTGCCTAAGGGGGCAGTGCCGCTCATAATGTTCTATGT 33377 24 95.8 39 A....................... CTTAGATTACTTATTTGAACCTGTCAAGAGAGAAATAGC 33440 24 100.0 43 ........................ TTTTTGCGTGTATATCACAAGGCGCCACTGAGTGCTTTTATTC 33507 24 100.0 43 ........................ TTTACATATGTCGAAACTGATATGCGACTAGTGGACTGGATGC 33574 24 100.0 45 ........................ CCGAGAGAATTGCGGTTTTTCCACAGGTTCTCAAATCGTCTCTCC 33643 24 100.0 44 ........................ TTGCGTACTAGTGCCGCAGTGATGAACGCGAACGCCCACACGGG 33711 24 100.0 48 ........................ GTCTGTACAACGTGTCGTGTGTGCCACCACGCCTCTCGAAGGCGTCTA 33783 24 100.0 44 ........................ TGATTATTTATTTCTCCCTGTTCTTGTCGGAGAAAAACTTAAAT 33851 24 100.0 44 ........................ ATGGCGCAGGTTTTCAAGGCGCATCACGGCCCGAGCTTGACCTC 33919 24 100.0 41 ........................ AATCGATTTGCTGAAGTGCGGCCTGCCATCTCCCCTCTTGT 33984 24 100.0 43 ........................ ACATATTCATCTAATAGTTTTCGACTGTAAGTCGTGCTTATCA 34051 24 100.0 39 ........................ TACGATTCGAATATGAGGGCGTGGTACAGCGTTGTTGAT 34114 24 100.0 45 ........................ ATGTGAAACGCCTGCGGCTTCTCTGCCGATATCTGCACCGCGTTG 34183 24 100.0 47 ........................ AAGCCTAACAGATGCAACACGCCACGAATAAAACCATATGCGTGAAT 34254 24 100.0 49 ........................ ATCAATGTACATAAACCCGTTGTGGGGCACCAGGGCGTTCAACAGGACC 34327 24 100.0 47 ........................ CACTGCGGCTCTGTGCGCGTGTACCGCGCCGATGGCGAATACGTATG 34398 24 100.0 44 ........................ ATAAAATCTCCCAGGTTTATAACGGTTTTGTTCGCCAAACTCAG 34466 24 100.0 44 ........................ ACCCCCTCCCCCGAGGGGATGGTTCACGGCGGGGGTTCACAGGG 34534 24 100.0 46 ........................ GTATAAACTTGTGTGAAAAATACACTAAGGAAATGGCCGAATGTGT 34604 24 100.0 43 ........................ TGAAAGGGAGTACCGGGTATGGCCATACACACTCACCTCCAAG 34671 24 100.0 46 ........................ GGTGATGTGGCCCTAGTGTTCAGGCTGACTGGGAGGCCCCAGGGTG 34741 24 100.0 48 ........................ TATATCAGCACTTGTTGCGGAACTCTTACTTCAGCGATATAGTTGTCG 34813 24 100.0 45 ........................ TTTTGTTTCTACGCGTTTGATTATATCGAATCTCCTTATTCCTTT 34882 24 100.0 39 ........................ CGCAGTTATTACCCAGCAGAGCGCTGTTTTAAGCTTTTC 34945 24 100.0 44 ........................ CTTGTACATCCATCTTACATCTACACGCAAGGGCAAATCGAAAA 35013 24 100.0 46 ........................ GCCAAGCGGTGCCCGCTACGCGCTATATATGCAGTGCAACGCCCGG 35083 24 100.0 45 ........................ TGTCCAGCTCCACCTCCACCTTCCTCCCCGTGGTTATGTCAACTC 35152 24 100.0 44 ........................ GAATTAGATGTGCGCGAGCGGTTGTGGGTATGCACAAGCAGATA 35220 24 100.0 43 ........................ CCGCACAAAGCGCCAGTCACTTGTCCTGCAATTGAGGGCACGA 35287 24 100.0 40 ........................ CTAACGCATGTGTTAACGTCCAATACGGAGATCAAATAAA 35351 24 100.0 45 ........................ AATTACATAGCCGACGTAGCCCCAAACTCCGGGTCCCAGCGGCTG 35420 24 100.0 43 ........................ ATATTCGTTGACGAATTGGCGTGGAGGTTAGGCGTATATGATG 35487 24 100.0 44 ........................ GTTGTGGTACAACAATGGCCAATATGCATACTTTTCAGCGTATT 35555 24 100.0 46 ........................ GGTCTGGCCAGGTACGTGGAGGAGGAGCACCTCTCCGTACCCTTTA 35625 24 100.0 46 ........................ AGTCGCAATTTTCTTCAGCACATACCGCTCAAACACGGAGTCCTTT 35695 24 100.0 47 ........................ TGAAATACCTGACTTAGACAGCACTTACAATATCTTAGTCTTAGCGA 35766 24 100.0 46 ........................ GTTCAACTCTTCTTAATGTATCCTCAACTTCTTTCCATTCCTTTAT 35836 24 100.0 38 ........................ CCCCCAGCCTGCGCCCGGTGGCGCCCAGTAGCCGTGTT 35898 24 100.0 46 ........................ AGATTTTGGCAGAGGGATCGAACTTGGCGCCAGCCTTCTTCAATAG 35968 24 100.0 46 ........................ CTGATCCGTGTAGCGTGGCAGGCAAGCTGATAACGTTAGCGAGACC 36038 24 100.0 42 ........................ GCCTTTACCCCGGCCTCGATCACGTAGCGTCTCACGAGAGAG 36104 24 100.0 41 ........................ TTGCGTCAAGACTATCAGCGATTTCCCACATGTCCAATACT 36169 24 100.0 45 ........................ GGCAGGCAGGGCTATGCCGAAGACCGTCACAGTGCCGCCGGACTG 36238 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== =================================================== ================== 51 24 99.9 44 GAATCTCAAAAAGAGGATTGAAAG # Left flank : CGGCGAATAGGGGGGAAACGGCAAAGGGCTTGGGCTTGGCGTCGTGAAGCCATCCCCCCACTCTAGACACCACAAGAGACTCCACCAGAGTGCCGGAAAACCCAGTCAACACCACTCCCCCGGCCAGCCTGCCCAGAACTCTAACTCTCCACACAGCCCGCACAACGCCCCCATATTAAACTACCCCTCTATATACTCTATATATTTTTTGGCGTTTAAAAATCGTCGTACGCAATTCTCTTTACAAATTCCCATATTTCAACTGTCTTTCCGAGTTAAAAATTGTAAAGAGGGTATCCAATTTATAAAACGTCGTACAACAACTCGGCGCACCCCGGCGCCGAGAGGCAAAAAACGGCGTTCAACTACCGGGAATAGAGTCAATCTCCAGAATAACAGCCACAAACCCCTAAAAACGACACAAGAAAAAACCGCCTCCAAAGACAAAACAAAAGGAGAAAAACTTAAAAACCCCCAAAAACACAAATCCAGAAACCCCA # Right flank : TTCAATACCGGCCTCAGGTATATTTGGGGCCCGGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAATCTCAAAAAGAGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GAATCTCAAAAAGAGGATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 1 2429-1522 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000061.1 Pyrobaculum aerophilum strain YKB31 NODE_61_length_13390_cov_9.97678_ID_4417, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ================================================= ================== 2428 25 100.0 41 ......................... CGCTCTGTAGACGTTCAGCGCCTCCTCAACGATCTCATCAA 2362 25 100.0 49 ......................... ATGCTATATACTTCATAGTCATAGCCATAGCGCCTAATTAGCCTTGTTA 2288 25 100.0 40 ......................... TGAGACAAGTTGCGCCGGTCAGAGTCAGACGCCCGGTTGT 2223 25 100.0 46 ......................... CAAATGATTTCCTGAACTGCTCCGTTTGCAATTGAATATCTGTTTA 2152 25 100.0 47 ......................... ACTGGCGAGATAACAGTGCCGCAATCGACGCAGACATAGTGACCGTC 2080 25 100.0 36 ......................... CGATTTAGTTGCCGGGCTGAATCTAAAGCCCAGCTC 2019 25 100.0 42 ......................... ATAAAGTATGTGTCTCAACGCATATGACAGAAAAGAATTAGA 1952 25 100.0 42 ......................... CTGATAACTTCTTTACTCACCCTGTCAGCTTCGGCGACAGCT 1885 25 100.0 42 ......................... CCGCCTAAGTCTTCGTCTCTAATAACGCCTAGAGTGAATATC 1818 25 100.0 43 ......................... ATTGCTTGCTCTATAATCAGCCACATCGGAAGTTTCTTCTTCT 1750 25 100.0 40 ......................... TTTCGCTATACGCGGCGGATATTGACGCGCTGAAGGGCGC 1685 25 100.0 45 ......................... GCGCCTATATATTAGCTTAGCATTTTTTTCACAGTACTGTACTCA 1615 25 100.0 44 ......................... CGGTGTAGCCTTACGACTGGGAAGCTTGATGACGGATCTACAAA 1546 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ================================================= ================== 14 25 100.0 43 GAAGAATCTACAAAAGAATTGAAAC # Left flank : TATTAGCTGATTAGCGGTTCGGCGTATTTTTCGCCGTATTACACCAATGCAGCCTTGGCCATTTCGCACATGCCGTAGTAAAGCTCCAATTGCTTCACTACCTTGCCCCCCGGCAAGACAGGCCGCTTAAAGCATCTGCAACGCCGATGCCTAAAGTTCTCTAAAAACATAAAGAGTGAATGCGCGTAAAACTGCCATGGACACACCTCTCTGCCAAGATTTCAAACCCTTGGATAAGTTTACAGAATAAATTTCAGATTTTACGGTATAATTGTTTTTTAGCCTTTACTTTGTAAAATTAGACATTTTGAGCGGATGTCCCTCTGCTTTGCCTCTATCTTTTTCTATTGTGTCTTCGTTAATGTTTATCTCTCTACCCAGTGATGTGGTAAGCGTGCTGTGGCGGCCCGCCGAAATGCCCCAGCCGCCGAGGAGGAAAACAGACGTGAGGCAAAAATTTATAAAGCGGGAAAAACTAACATCCCGAATAAAAACCCACA # Right flank : ATTTAGATTGATATCGGCGGCGATGTGAAGGCTGAACGGTTTGTAAGGGGGTCTGAGGACGTGCTGAGGCGTAGATACGGCGATGACGCAGTGAGAAAGCTAATTGAAGTGCTTACGCCGGCAAGAGAGGAAGGGACGATAGATCTGCCGCTTGCAGTTTACGACGAAAAGGGCAATATGGTAGCCCGTATTGTAGATTTGAAATACGAGTTCGTCAAGGGAAAGCGGAAGGGTAAGCGGTCTGCGGGTCGGCAGGTGGTAAGCCAGTGCACCGGAGAGGACTGTTGCCTGCGCATAATTGTGAAATACGAAACAGAAGGAGAAAGGGGGCAACTTAAGATGGAATGGTATTGGGCAAAGGGGCAGAAAAAGAAAGGTGAGGCAACGGTAACGTACTACTACGAAAGGGCGAACATCAGCATCAAAAACGACGTAGAAGTCGCCGTACTGAAGGCGCTAACGGGAAAGAGCGTGGAAAAGGGCAAAGTAGCGTTCTTCGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGAATCTACAAAAGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.77 Confidence: HIGH] # Array family : NA // Array 1 10920-9804 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMUE01000068.1 Pyrobaculum aerophilum strain YKB31 NODE_68_length_11463_cov_11.1755_ID_4431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= =============================================== ================== 10919 25 100.0 46 ......................... ACTGAAAAACTGACGTCGGTAATAATTACGGCATCGCTCTTCACGG 10848 25 100.0 41 ......................... GAGGTGAGGGGCACGCAGTGCCCCAGGGAGGGGGAGCACGT 10782 25 100.0 42 ......................... TGCCGAGCTTGGACGCGCCGATACAGCTGATCCCTGTGGAGG 10715 25 100.0 41 ......................... GCAGTCGTCAGCCGCGGGATAGCCGCGCTGTACGATCTCCT 10649 25 100.0 44 ......................... CCCTAACGCATTGTTCGAGCTCTTCATCTGTGAGCAGAGAATCG 10580 25 100.0 43 ......................... CGTGTACAGTCTGTACTTCATGCCTCGTGAAGCCAGGCCGCGC 10512 25 100.0 41 ......................... CTGCGCCAAGGACCTCCCACCGCTTATAGACGTTGTACTAG 10446 25 100.0 40 ......................... AAGTCCGGTTTGGCGAAAAGCGCGTTTAAGGAGGGCATCT 10381 25 100.0 43 ......................... CAGAGTTCATAAGGTGGATAGGCGCCGAGCCTAAAAAGCTGAG 10313 25 100.0 42 ......................... CTCTACGACGAGAGGACTGGCAAGTACTACTCAGTGGGGACT 10246 25 100.0 44 ......................... ATAGCAACGCTACCGCGTTCAAACCGGATAAGACCTAGGTCGTG 10177 25 100.0 44 ......................... GCTAGATCTTATTAGTGAGAGCAGTCGCAGATATCTAGCTAGTT 10108 25 100.0 47 ......................... ACAGTGCCGTTGTGCGCAATAAGGGCAGACTCGGCTTTTATCTCTAA 10036 25 100.0 45 ......................... CGTCGCTTTCTGATAGTAGTGAAACGGTGGTTTCTCCGTGTTCAT 9966 25 100.0 44 ......................... ACACAGGTCAAGGGCCAAAGGGGGCCTCTTTACAAATAACCCAG 9897 25 100.0 44 ......................... GGAGCCTCTAATGCAATTACAGCTACACGGTCCACGAGAGGCTG 9828 25 96.0 0 ....................A.... | ========== ====== ====== ====== ========================= =============================================== ================== 17 25 99.8 43 CCAGAAATCAAAAGATAGTTGAAAC # Left flank : CTACACCTCTCCGCCACGTACTTCGCCATTGCCAGCGCCTTTGCCACTGCATAAGCCGCCGCCCTCACGTCCACTGGCTTTGGAACAAGCCTTCTCAGCCTAATGGCAATTGAAAGGGGATTTGCGAGATTGCCGAGGAAGAGAGTGTCCCGCGCCCGCCAACTGAGCTTTAAATACAGCCTCCTCCCCAAAAGCCACATGTAACCCCTAACGCCCCTAATTTCAACCAGGCCTATGTAAAGGTACATGCCCCCCACATCCTCCACATTTTAAAACATTTGTTTATATGAATGTAAAGTGGTGGCGAGAAAGCGCGGCGAAGAACGGCGTTGGGTATACGCTGTTCTTACATAGTGCCATTATCATTACGGCGAAAAACGGCGTACGCCGTCGGCGGATAGGGAAATATATGAATGTAAAGTGGATAACAAAAGGCGCTTGCCGCAAGACAAAAAACCAAAGAAAAACTTAAAAACCCAAAAGAACTTTAAATGCAAGCA # Right flank : GATATTTGTAAAGCGTGTTAAATTGTCTGCGCCTCTCGGCGCCGTGTTTTGAACTCCTGGCAGTACGAATGAGTATGTCGAGCGGCTGTTAAAGGCGCAGTGGGGATGGGGGCCAAAATACAGCCCGTCGGCGCTTGATTTTGAGCGCGGCTACCGCCTTACCCACCTGGCGAAGGTCTGTATTGGGACGTAGACAAAGCGGAATTCGTCTCTCCAAGTGGGCATGATCTTCCCTTTTATGGGTATTTTCGCGCCGCAGAACTTACAGCGGTACTCGCCTCCCTTTTCCACCAGGTTTATTTCTAATATGTCAAAGCCCCTCCGCCTTATTACTACTCTGCCGCACTCGGGGCAGTAGGTGTGTTCATAGCGGTGCCCCGGCACGTTGCCCACGTACGCAAACCTCGCCCCCTCTTTCTTCGCCACTTCTACGTGTTTTTCCAGCGTTTCCACCGGCGTTGGGGGGAGGTCCATCATTTTATAGTCTGGGTGGAAGCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGAAATCAAAAGATAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: R [matched GTGGAAATCAAAAGATAGTAGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.18 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], //