Array 1 383274-384889 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPV01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 123 NODE_1_length_619818_cov_18.1842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 383274 29 100.0 33 ............................. TCGTACACCAGCGCTTTACCGGAGTGTCCGTGC 383336 29 100.0 32 ............................. ATCAAATATCAGATAACCCCCGTCGGCAAACC 383397 29 100.0 32 ............................. ATCACATTCCTGAAAAATGACTCCCTTAGCGA 383458 29 100.0 32 ............................. GAAGATATTGAAAGCGCCCAATCTTCCCAGCT 383519 29 100.0 32 ............................. TCCAGCATTGACGCGAACCCTGCGCCGCTGGC 383580 29 100.0 32 ............................. GCTGAAATATTGCTATTTCCGAAGGGGCTGAT 383641 29 100.0 32 ............................. TCCCGCCTGAACAAAATCGACCACGTTATTAA 383702 29 100.0 32 ............................. GCTCCCGCGGGCGCTCCTGTTGGCCAGCATCA 383763 29 100.0 32 ............................. CGTCCAATACGAGCTGAGTGCGCACGCCCTTA 383824 29 100.0 32 ............................. CAGATCGACCGCCTGGAGGTTGAGGTGGTTGG 383885 29 100.0 32 ............................. GCGTGGATTGATTCTGATCGCCGTGGGCGGGC 383946 29 100.0 32 ............................. GAAACAGAGATCGCGTCCGATAATGCCGACAT 384007 29 100.0 32 ............................. AGAATATTCAACTCCAGCGGGAAAAAGACGCA 384068 29 100.0 32 ............................. AACTTTCATCAAACTGGATCGAAGGGCCACTT 384129 29 100.0 32 ............................. CCGGTTTTAGCTCGCTGGAAACCTCGCTTTTG 384190 29 100.0 32 ............................. ACGCCGAGGGTGAATATTTAGACCGGGACGCA 384251 29 100.0 32 ............................. GGATCATCAATGTGGGAAGTTATCACAACGGA 384312 29 100.0 33 ............................. CGAAATTCAGCGTCTGGAATGCAAGGATTTTGT 384374 29 100.0 32 ............................. GCTATATCCCCGAATCGTGCGCTACGTGAAAA 384435 29 100.0 32 ............................. ACGAGGTCATTTTCAGCACTCGTCAGGCGCTG 384496 29 100.0 32 ............................. ATGCCCTGTTCGGCAAAATCCCGCCACGCTGG 384557 29 100.0 32 ............................. TAAAACCGGTGCTGGATTTTGATGAAGACGAA 384618 29 100.0 32 ............................. CCATTCAACATCGCACTTAAGAACTTGTGCCA 384679 29 100.0 32 ............................. CGATATTTATCCAGACTGTCGGACAGGGTGGT 384740 29 100.0 32 ............................. CCTCATCGGGAGCCAACGCCGCGAGAATACGC 384801 29 96.6 32 ............................C AGCACAATCATTATTAGATGAACTTTCATCAA 384862 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAACAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGTCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATATGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGATATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 401172-403069 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDPV01000001.1 Salmonella enterica subsp. enterica serovar Infantis strain 123 NODE_1_length_619818_cov_18.1842, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================================================== ================== 401172 29 100.0 32 ............................. GCGGAATACCACTATATAAAGCCCCTCAACCC 401233 29 100.0 32 ............................. ATTTTTACAAAAACTGGCCCCCTGAATTCATC 401294 29 100.0 32 ............................. TTGATTTTAATGGCGGGCGAATTGTATTTAAC 401355 29 100.0 33 ............................. TTTCCTGTAACATTCCGATATATAATTCTCCGC 401417 29 100.0 32 ............................. GCCCAATTGCCGGCGACGGTTTCCATGTCAGC 401478 29 100.0 32 ............................. TGGCGAAACAGGCCAGAGAACGCGAATTGCAG 401539 29 100.0 32 ............................. CGTGTTCGATGTAGGTTTCTTCCTGAAGGCGA 401600 29 100.0 32 ............................. CTACCAGGCCCGTTTGTCTCAACCATGACCAA 401661 29 100.0 32 ............................. TTGGCATGGCTGGCGACGTAGCGAACAAAATC 401722 29 100.0 32 ............................. CATAAATTACTCGATGCGTACCTGTGAAATCT 401783 29 100.0 32 ............................. ATACAGTAGCAAAATAAAAAGGCCGCGTGAGC 401844 29 100.0 32 ............................. CAATGCCGTTTTGCCCGAGTTTTCACCGCCGT 401905 29 100.0 32 ............................. CTCTATTGCCGGGGGTCGAGATGGCCGCCTGC 401966 29 100.0 32 ............................. GTGATCCGCGCCTATGACGCAATGGTAACGAC 402027 29 96.6 32 ............................T GTAGCGCAGGGACTGGCAACGGTGCCGGGCGT 402088 29 100.0 32 ............................. CAGGAGACGGCCAGCCGCACCGGTGGCGGTGC 402149 29 100.0 32 ............................. GGCGTTTTATTCGACCTGAAAAAATGGATCGT 402210 29 96.6 32 .............T............... ACATCTCGCGGACAATAGCGATTTCCACCGTC 402271 29 96.6 32 .............T............... CGTTTCGTTCATTTATTTAGTTTCCTGTTTCG 402332 29 93.1 29 .............T..............C CTTGTTAAATACAGGCGGCGGCGGGGTTG 402390 29 96.6 32 .............T............... AACGGCGACGGGATCGTTTTTTGTGGCGAAAA 402451 29 96.6 32 .............T............... CAGGATTGGATTAATGAAGACGGGTACGAAAT 402512 29 96.6 32 .............T............... AGATTGCAGAATTATATTTCACGCTGGCAGCA 402573 29 96.6 32 .............T............... CTGTTGTTATGCGTTGGATCGTAATAGTTAAC 402634 29 96.6 32 .............T............... CTTGGCAGGGCTGCGCCGCAATGGCAGCAACA 402695 29 96.6 32 .............T............... GTCTTATAAATTGGGCTGATAGTGCCGCTGAT 402756 29 100.0 32 ............................. TACCTGCCGGGACTGGAGTGCAGGTAACCCCA 402817 29 100.0 72 ............................. CGGCCAGCCATTTAAACAGCGCTGCAGCGGGGATAAACCGACAGGGTATATGAGCTTATACGTCATGAACCA 402918 29 100.0 32 ............................. TCGTTGGTGGCGTTCGTCACCTGGCTGTCGGT 402979 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 403040 29 93.1 0 A...........T................ | A [403066] ========== ====== ====== ====== ============================= ======================================================================== ================== 31 29 98.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACATCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGTAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //