Array 1 97718-98585 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUE01000015.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 97718 28 100.0 32 ............................ TCTTCGCTGCTTGATCACGTCGCCCAGGGCGA 97778 28 100.0 32 ............................ AGCGCCAGCAGGGCGGGGAGGTATTGTCCAAT 97838 28 100.0 32 ............................ AAGCCGGATTGTTGGGCTTGGAGAAGACGATG 97898 28 100.0 32 ............................ TTCACGGCGCCGCAGTCTGGGCATTGAAGGGC 97958 28 100.0 32 ............................ AGAAGTTTGGCCCGATGCTCGAGGATTTCATC 98018 28 100.0 32 ............................ GACGTAGTACAGGTCCAACAGGCGGCGATACG 98078 28 100.0 32 ............................ ATGCGTGCCGCGGCTGAAATCATTGCGCGAGG 98138 28 100.0 32 ............................ TGAACGGTTTGAAGTTTCAACGGCATGCCGTC 98198 28 100.0 32 ............................ AGATTCGCACTCGGGAGGCGGAGGCTTGCACA 98258 28 100.0 32 ............................ AGTAGGTCGCGTTCGGCGGCGAGGCGTTGAGC 98318 28 100.0 32 ............................ AAGCTGGCGCCGATGACGGCTACTGCCGCCAC 98378 28 100.0 32 ............................ ACCGTCATGCTCTGGCGCATCGATGCCGGCGA 98438 28 100.0 32 ............................ TTGTCTTCGGATGCGAAGTGGGCATTCGTCAC 98498 28 100.0 32 ............................ AGTCAAATACAGCCTGTAAGAGAACCCCCATT 98558 28 78.6 0 .C..........A....TG..C.G.... | ========== ====== ====== ====== ============================ ================================ ================== 15 28 98.6 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAGAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCTTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCGTCCCAAGCGCGACGCCCCCGGCCTGGCCAGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTTGCGCGTAAACGGCGAGGCTCACCGCCCGTCCCGCCCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGCTTCTTACGCCCTTTAAAATCAATAACTTACCAAGACACGAAAAAAGAGGGTTGCAGACCAGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : AGCCGGCTGCGTATCCCAGTGATGATGGGGGTTCCAGAGTCCACACACTGGAAGTTCCGCCTCGCCGACTTCATTGATTGCGCCCCACCGTGCCGATGATTTTGCCCCCGGCAGCGGCAAGGAGCGGCTACTCCGCTCGCCCCATCATCAATGAAAGTTAAAGAATCGTGCGGTCTCGTATCTACGACAGCAGTAGTCGAAGTGCACAGGAAGTTGCGCCTTTCATCTCCATTACTTTCGCGCGAGATATATCGCGCATGAACGAATGCAAGGATTCGCACATGAGTGGAAAACCCGCCGCCCGCGCCACCGATCCCACGGCCTGCYCTCTGCCGGGTCACGRCACCAGCCCCATCGTTCAAGGCTCTCCCGATGTCATTTTCGATGGCCTGCCCGCCGCACGMCAAGGCGACGCCTCGGCATGCGGAAGCCCGATCGCCTCGGCYGTTTCATCGACGGTMTTCATCAACGGCCAGCCCGCCGCCACCCTGGGCAGYGTG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 38284-39453 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUE01000025.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_25.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38284 28 100.0 32 ............................ TGCGGATATGAAACCGATCCGGCAGCCGGTTA 38344 28 100.0 32 ............................ TTCCAGCGCTGGCTGGTCATGTTCCCGAACAT 38404 28 100.0 32 ............................ TGCTGGTTCACCGAGTCGAGCAAGCGCGCAGC 38464 28 100.0 32 ............................ TGGCAGCGGGAGGGGTCATCACGACGATCCCT 38524 28 100.0 33 ............................ AAGAAGAGATGCGATCTTCCTGAAAATCATGAT 38585 28 100.0 33 ............................ ATTTCAGATCGCATCGTCGCCCACTCGGTTATC 38646 28 100.0 32 ............................ AGTACGTGGAGCAGGCCGCCAAGACAATCGTC 38706 28 100.0 32 ............................ GGTGCCGGTGTTCCGGCTCACGGTCGACGGCA 38766 28 100.0 32 ............................ AGAGCCTCCACCTTGCTCGTAACCCACTCCAG 38826 28 100.0 32 ............................ TTCGAGTTTCGCACCGGATTGGTTCCGTACCG 38886 28 100.0 32 ............................ ATCGTGCCGGACAGCAGCAGGATGCCCAGGAC 38946 28 100.0 32 ............................ TCGGCCCGGGCCGTGGTCACGCCATCCACCAG 39006 28 100.0 32 ............................ TTCAAGGTCAGCCAGTTCAACCCGCTGCGCCA 39066 28 100.0 32 ............................ TAGAAAGTCGGTTTCCCGTCATCGGTGAACTT 39126 28 100.0 32 ............................ AAAGGAAAAACAATGACTTACGTTCTCTACGG 39186 28 100.0 32 ............................ TGGCCTCGATCCTCCGTTTCAACGGCGACCGC 39246 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGCGGTCCAGGCG 39306 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39366 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCCTAGGGCGA 39426 28 82.1 0 T.........A......TC..C...... | ========== ====== ====== ====== ============================ ================================= ================== 20 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGCCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGTTTTTGGTCTA # Right flank : ACGGCCAGCAGACCTGAAGTATCGATTGATGTGGTTCGCTCTCGGCCGGGGCCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGATTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCTCGAAGGTCTTCCGCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 49067-48378 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUE01000025.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_25.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 49066 28 100.0 32 ............................ TGGTCGAGAATACGGTACCAAAAGGAGCCGCC 49006 28 100.0 32 ............................ AAGAGGCCCACATCGCTCATAGCGTCCTGGGC 48946 28 100.0 32 ............................ TCCGGCCCCTGGCGGCCCCGTAGTCGATGAAC 48886 28 100.0 32 ............................ TGTGGGTAGACGAGTGGGCCGACCAGTTCCAG 48826 28 100.0 33 ............................ CAGGCGAAGCGGCTGGAGTGGTGGGGATTATTC 48765 28 100.0 32 ............................ CACCCCTCCGGGGCCAGTTCCGAGCCCAAGAG 48705 28 100.0 32 ............................ TTGGCAACCACCGCAGCAAAAATAATGTTCAT 48645 28 100.0 32 ............................ AATGAAGCGCCGGAATTGGAAGCACGCCCAGC 48585 28 100.0 32 ............................ AAGCAGGTGGACTTTTCCGAGAAATCCGGCGA 48525 28 100.0 32 ............................ TGCAGGTGCTTCGAGACCTCCCACTCGCCACC 48465 28 100.0 32 ............................ CGTAAGTCCCCGCATGCCAAGCGTGCCGCGCC 48405 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGCGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGGCTCTGGCAGGAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAGCCCACCTCGGCCACAACAGCCGCCGGTTTCACTGCCGTCCAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTCCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCCTGGAAGCTCACGCTCCTCATACAGACGTAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATCTCCTCCAGCGAACTGAAGACGATCCTCCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 123800-124367 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSUE01000016.1 Pseudomonas aeruginosa strain IDEXX_Canine8 IPC725_16.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 123800 28 100.0 32 ............................ GCTTGTGTCGAGCAGTCTCGACAAGTCATGAG 123860 28 100.0 32 ............................ GTCATCATCAGGCGGTAGCGCGTTGTCCCAGC 123920 28 100.0 32 ............................ AGCAAAGCCGTAGACCGTGAACTCCGGCCCGA 123980 28 100.0 32 ............................ GCCTGCTTTGACTGCATGCGCTCATGCATGGC 124040 28 100.0 32 ............................ AGCCACAACGGCGAGGCACCAAGAAGGATCGA 124100 28 100.0 32 ............................ GTCACCAGTTCCAGAACATCGGGCGCGTATCG 124160 28 100.0 32 ............................ GGTAAGCCGGGTCCGTGACTTGCTGCCCAAGG 124220 28 100.0 32 ............................ ATCAGATGCATAGAACCGCTCAAGAGCCGTCG 124280 28 100.0 31 ............................ CGGTCCCTTGCTCGCGCCGACCAAGCGCCCC 124339 28 82.1 0 ......................G.CTTC | C [124359] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGCCACGCGGCGAGCATCGACACGCCGCCGTCGAAGACGGTGGACGTAGTAGCAAGACCGCGCCACATCGAAAGCTGAACAGACCACTTCCACCGACTCCTGCTCACTCAACTGGTCTATCAGCGCGTACGATCGAGTTCGTCCGACATCAAGAGAGCGGTAGCCTTTTTTAATATCGCTTTCTCCCGCTCCAACCGGTTGATCCGGGCTTCCAGCTCCTGGATCTTTTGCTGCTCAGGCGTCAACGCCTTGCTCTTCGGGGTCACACCCTGGCGCTCCGCCTCGAGCTGCTTCACCCAACGGCGCAAGGCCGAATCCACCACCCCCAGCGAACGGCAGGCGTCGATATGGCTGTAGCCTTGGTCCAACACCAGGGCCGCGGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGCGAGGATTCTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTACATCTGCAA # Right flank : CCACTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGAAGACAATGCCGTTCACACCCGGCTTTCCCCTGACGAAACGAATAGCCTGTCCGTCTCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGTATGAGTGGGATGGACCTCAAGCGCCGTCGCGTCGTGCAAGGCCTGGGCGCTGGACTGCTGTTGCCGGCGCTGGGAGCGCCGGCGCTGATCGCCTCGCCCAGGGCGCGGCCGAAGCTGACCGATGGCGTGCAATCCGGCGACGTGCAGGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGCCCGGCGCGGATGATCGTCGAATGGGACACCCGTAGCGTCTTCAGCGAGCCGCGCCGGCTAGTCTCGCCGGTCACCGACGAGCGCCTCGACTACACCGCGCGCATCGACCTGCGTGGCTTGCCTGCCGACCAGTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //