Array 1 26971-26532 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMR010000005.1 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_3_mod, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================================================== ================== 26970 25 77.8 66 GA....-..-...........G..C.. AGTGCGCTCTTCGCGGTCGGCGCGGTAGTCGTCGTAGTTGTCGTCGGTGGCGTAGCGCGGGTTGCG 26879 27 74.1 39 G..C....C.....C....C.....AA ACCGCCACGGCGGTCATCACGATCGCCACGGTCATCGCG CC,G [26856,26861] 26810 27 96.3 54 ........................A.. ATCATCTCGGGAGTCGCGAGCATCACGGTCATCGCGATCGTCGAAGTCACGGTC AAG [26804] 26726 27 81.5 33 GA.A..A.................A.. ATCATCGCGATCATCGCGATCGAAGTCACGGTC 26666 27 100.0 21 ........................... GTCGTAATCATCCTCGAAGTC Deletion [26619] 26618 27 100.0 30 ........................... GTCACGATCGTCGAAGTCACGGTCATCGCG 26561 27 85.2 0 ..............C....C.....CG | CC,G [26536,26541] ========== ====== ====== ====== =========================== ================================================================== ================== 7 27 87.8 41 ATCGGAGCGACGGCGACGCGGACGGTC # Left flank : TGACTCGGACATGGCGCGGCACGGCAAGCGGATTTTGCTGTTGGGCATAACAACAGACGAGAGAATAGATCCGGTCGTGAGCAACAGGATAGGTGCCATGCGGTGCCGTGTACAAACTGTTGTCAGTTGTCAACGCTTTTTAGCGTGGCTCCAATCATCTTAATGGCTGTTTTCCGCCATTCTTGATGCATGAGAATAGTTGTCAACTGACAACTGAATGTACATGGCAGCAGCACGAGTGCCCTATTCAACATCGAAATATGTAGCGCGAAGAAGCCGAAAAACCAAAAGGCTTCTATACCGAATGAAACGGTATAGAAGCCTTTTGGTTTGCGATTAAGCTCTTCTCACCCGAGAGAAGCTAGAGAACGATCAGTCCTCGAATGCCGAACCGTTAAGCGGGAAGCCCTGCGGGCTTCCCGTAGGTGAGGGGGGGGGAGAGCGGCTATGCCGCGACCGATCCGTGAGAGGGCTTTAGTCCTCGAACGGATCAAAGTCGC # Right flank : ATCGTCACGGTCACCACGGCCACGGCCGCCACGGCGGTCATCGCGATCGCCACGGCTCGGTCGGGCGTTGTTCTCCTGATCCTCGAAACCAGGGATGGCCAGGGAGATCTTGCCGCGATCATCGACACCCTGAACGATCACCTCAACGGTGTCACCTTCCTTGAGCACGTCTTCGACGGCGTCAATACGCTCGCCGTTGGCCAGGTTGCGGATCTGGGAGATGTGCAGCAGGCCGTCGGTGCCGGGGGTGAGGTTCACGAAAGCGCCGAACGACGTGGTCTTGACGACCTTGCCGTTGTAGGTTTCGCCGGCCTCGGGCACGTGCGGGTTGGCGATGGAATCGATGATGGACTTGGCCTTCTTAGCGGCCTCGCCACCCTCGGAGGAGATGAAGACGGTACCGTCATCCTCGATGGCAATTTCAGCGCCGGTATCTTCCTGAATCTGGTTGATCATCTTGCCCTTCGGGCCGATGACCTCGCCGATCTTCTCGACCGGAA # Questionable array : NO Score: 4.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.41, 5:0, 6:0.25, 7:-0.77, 8:0.8, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGGAGCGACGGCGACGCGGACGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGAACGACGGCGACGCGGACGATC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.30,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 370848-372674 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMR010000005.1 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_3_mod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 370848 33 97.0 33 ................................G CCGGTGTCGGCCGGGGTTTTGCTGTCGGTCATG 370914 33 100.0 32 ................................. GATCCTTGCCGAAAAAGCTCACGCCGGAAAGA 370979 33 97.0 35 ................................C GCTTGGCCGGCCGGTTTTCCACGCCGTCCGGCAAG 371047 33 97.0 34 ................................G TTGATTCTGGCCGTCATCCGGAATTGTCGCCGGC 371114 33 100.0 33 ................................. CGTTGCCGCCCGCGAAGCAGATATCACCGACAC 371180 33 97.0 35 ................................C TTCACTCGGTCACGGAAACGGCCGGTTGCGGCTCC 371248 33 97.0 33 ................................T GAATGGCGGCGGTGTACTTGCTGCGGTCGGTCG 371314 33 97.0 32 ................................T TCGAGGAGAACGTCAATGTCACGCAACCGAAA 371379 33 97.0 32 ................................T CAATCGGCACGTCGGTACCGTCCTTGAGAATG 371444 33 100.0 34 ................................. GGCATGGGTAAAGCGCGATAAGGCGGCTCGAATC 371511 33 97.0 33 ................................C CGCATCCACATGCACCACACTGGTCAAGTTATT 371577 33 97.0 33 ................................C TCGACCCGTTCCGAGTTCGGCGACCGCCAGATG 371643 33 97.0 33 ................................T GTCCCATGGAGGCCACGTCCTTGGCGAGGTCCT 371709 33 97.0 34 ................................T CGGACGATACCGCAAGGGATACATGGTTCGACGC 371776 33 100.0 34 ................................. CGCCGTAGAACGGTCCACCGCCGATGAAATTGCC 371843 33 97.0 33 ...................T............. GGGCTGAGCTGTTGCAGCGTCTCCCACAGTTTC 371909 33 100.0 33 ................................. GTTATTGCCGTACGGCATGGCGTGAAGCCGCCG 371975 33 97.0 33 ................................G TCTACTCTGCCAATCATCCCCGGCCACGCCCCC 372041 33 97.0 35 ................................G AAGCCATGTGTCACCAGTTTGTCGAATACGCGAAG 372109 33 97.0 35 ................................C ATGTACGGCGAGTTGGATGGTTTGGAGGCGGCGAG 372177 33 100.0 33 ................................. GGTCGGCACCGTCCTGCCATGCGCGGGCGTTCG 372243 33 97.0 33 ................................C GTGATGGTGTCGCCCGGCTTCGGGATCTTCACG 372309 33 97.0 34 ................................T ACGCGGCACCACGCATATGGTTCCTCGGAGCCAA 372376 33 97.0 34 ................................T CGACAAGCGCCTCCCCATTTGTCCGATGGACGTG 372443 33 100.0 33 ................................. CTTGCTGTCAACAAATAATATGATGGCACTTGC 372509 33 97.0 34 ................................G AGCTGGACTCGGAGGTCGCCGTCCTTCGCGGTGG 372576 33 100.0 33 ................................. CCAAAAACGCCCCCACGCCCGCCACCGAAAACA 372642 33 97.0 0 ................................C | ========== ====== ====== ====== ================================= =================================== ================== 28 33 97.9 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : GACGAATCGCAAGATAGCCTGCGTTACTACAATTTAGGGGCGAAGTATTCTTCGAAGATTGAGCATCGCGGAAGACAGCGGCACCTGCCAATCGATGACGTGATGATGCTCTAATGTCGGTTCGTGTGACGGTTTTCCATGATGACTGGGCAATGCAAAACCTTACTGTGATGAAGACCAAGGCGGATAAAACGAGGTAGGACAGTATAGGACGATACGATTAAAATCGTGGCTGAGCATCGATGCTTGATGCTGCAGCCATGTGACCAGCGCGAACTCTGAGTTCTCATGAAATACTTGTTCTTTCGCACTGAGATTAATGAATGCTTGGAGACTGATTATGTTCTCCTCGTCGTTTGATAACTCAAAAGTGGATGGTCTGTTGATGTTTTTGGTTCGAGAATTTGTGTATTGAGCGATGTACATGGATTTTCGCGATAAAATCAGTTTTGAGAACAGACGGAGCTTCCATATTATGGAATGCTATGCCCATTCTCGCG # Right flank : CACTGCTTGGAGAACGGGCCGGGATAATCCTTGTTTTTAGTCAAGTCGGTGTTTCGTGTTCGAGGTGGTGACGTTTTCTTGGACTCCCTGACCGGGAGGAGAACCCCCTCATGGCGAAATACAGCAGGGAGCAGCGCGACAGAGCCGTGGACCTGTACATCAAATACGAACGCTGCGCCGCCGACGTGATCCGCGAGCTCGGCTATCCCAGCAAGGGCGTGTTGCTGTCGTGGTACGCGGACCGGCTCGAGGAGGAGCGCACCGGCGTTCCCTCCGGGCGCGGGGAACGCTACAGGCGGTACACGGACGGGCAGAAACGGGCCGCGGTGGACCATTACCTCGAATACGGCAGACGGCTCAGCCGCACCATGCGGATGCTCGGCTATCCGAAAAGCAAGGAACTGCTCATGGCGTGGATCGACGAGCTCGCGCCCGGCCAACGCAAGTTGAGGCACGGTCCGGTCCCCGAGGAGCTGAAACGCGAGGCGGTGGTCGCGGTC # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 376913-377934 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMR010000005.1 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_3_mod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 376913 33 97.0 32 ................................C TTGGCCGACTTACCGCCAGGAATCACCACCTT 376978 33 100.0 34 ................................. CGAACGCGATCTGCTGTTGCGTGATGTAAGCCGA 377045 33 100.0 32 ................................. AGGTTCGAGGGTCGGCAGGATGCTGAGTGGTT 377110 33 100.0 32 ................................. TCGACAAGGCCACCAAGCTGTTGCTGTCCGAC 377175 33 100.0 33 ................................. AGACTGCGGATCAATGCGGCAACAGGACGTGCC 377241 33 100.0 34 ................................. CAGTCGACTCGGTTGACACATCCACATTGTCGAA 377308 33 97.0 34 ................................C ATGCTGCGATGGCGTCGATCTCCGCTCGTATCTC 377375 33 97.0 34 ................................C ATCTCACGTATTTCGGCCACGGTGTAGCGGGCCA 377442 33 100.0 34 ................................. TGCAGAGGAAGGCGACTTCGCCGCCGCCTCGCCC 377509 33 100.0 31 ................................. TCCAGAAAGTCGAATATGTCAACGCGCACTG 377573 33 100.0 31 ................................. TCCAGAAAGTCGAATATGTCAACGCGCACTG 377637 33 100.0 34 ................................. GTTGGCGTGGGTTGCCTCCCACCGTGGACGAACG 377704 33 97.0 33 ................................C GCAAGTGGAAGATTGACGTGGACTCGCTGTATC 377770 33 97.0 32 ................................T GCTCGCCCGAGGTCAAGAGTGCGCTCGACGTG 377835 33 97.0 34 ................................G TCCCAGTATTGGATTACCGCGCCTTGGCTTCCGC 377902 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 16 33 98.9 33 GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Left flank : CTCCCGCTCCGCCGCGGCCTCGCGCCTGAGCCGCGCCACGGTCCGGGTCACCGTCGACAACGACACCCCGGCCCCGTACTCGTCGCGCAACCGCTCATGGATGCGGGTCGCGGTATGCCGCTGCTTGCGCCAGGTCTCCCGGTCCTCGGCGAGCATACCCTCGATCATGGGCAGCCACTCGTCGATCACCGAACCACGACGTCGCCTCACGGGCGGCCTGGCCGATAGGTCGTCGACCCTCAGATACTTGCGCACGGTCGGCTCGCTGACCCTCTCGCTGCGCGCTATCGAGGCGATGGACTCACCGTTCCTGCGACGCGAACGGATAGACTGTATTTGGGGCATGCTGATCATTGCCTTTCCGGACCTTTCCCGAATGGAACTAGAAGCACCATCAGGCTAAGGCCCACGGGTGGTCGGCATGCCTTTCCGCCTAAACCCGAAAAACCTTCGTGACTAAAACCTCAACTTCCTATTGAACAAAAACAATAATCCTGGGT # Right flank : AAGAACAGATTCGTAGGACACTGCGAAAAACAAATAGGGTGCTTTCCGCCATCAACAGCGGAAAGCACCCTATTCTTATGGTATTCTTATGATCTCTCTGTCCTAATTAGAGCACCTCACTCCGCAGCAATCGCGGCCTTGAGCTCCTCGACCTTGTTGGTCTTTTCCCACGGGAACTCAACGTCGGTACGGCCGAAGTGGCCGTAAGCGGCGGTCTTCAGGTAGATCGGGCGCTTCAGGTCGAGCTTGTCGATGATTGCGGCGGGGCGCAGGTCGAAGACCTTGCGTACGGCGGCGGCGATCTGGCCGCGCGTCACGCCTTGCTCGGTGCCGAAGGTCTCCACGTTGACGGACACCGGGTCGGCAACGCCAATAGCGTAGGCGATCTGGATCTCGACTTTGTGAGCCAAGCCGGCAGCTACGATGTTCTTCGCAACCCAACGGGTGGCGTACGCGGCGGAACGATCGACCTTGGACGGGTCCTTGCCGGAGAACGCGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCACTGGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-7.00,-6.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //