Array 1 47067-47636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOK01000002.1 Escherichia coli strain MOD1-EC5478 MOD1-EC5478_2_length_565311_cov_63.6692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47067 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 47127 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 47187 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 47247 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 47307 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 47367 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 47427 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 47487 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 47547 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 47607 28 85.7 0 ....................A...C.CT | T,C [47627,47631] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56694-58763 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLOK01000002.1 Escherichia coli strain MOD1-EC5478 MOD1-EC5478_2_length_565311_cov_63.6692, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 56694 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 56754 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 56814 28 100.0 32 ............................ AAATTGGGGACACTTTCTTCTACCTCTTTTGT 56874 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 56934 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 56994 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 57054 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 57114 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 57174 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 57234 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 57295 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 57355 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 57415 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 57475 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 57535 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 57595 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 57655 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 57715 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 57775 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 57835 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 57895 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 57955 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 58015 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 58075 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 58135 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 58195 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 58255 28 100.0 32 ............................ ATGAAAAGCGCCGCCTTTATGCGCCCGATTTT 58315 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 58375 28 100.0 33 ............................ GTTCGACGATTGAGTCCGCCGCTGTTGTTTGAT 58436 28 100.0 32 ............................ CGGCGGACCACTCATCATCGTATAAATCTTTC 58496 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 58556 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 58616 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 58676 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 58736 27 92.9 0 .......................-C... | T [58756] ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //