Array 1 769-140 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFKN01000054.1 Acinetobacter baumannii strain 4300STDY7045752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 768 29 100.0 31 ............................. GCAAAAATAGGATCCGCAAATTCAATCACTT 708 29 96.6 31 ............................T TCAACAGACTGAGCAAATGCTTCACTAGGAA 648 29 96.6 31 ............................T AATCGCCCTTATGAGGTTGATACTTCTCAAA 588 29 100.0 31 ............................. TCTTGGATGACTTTGTTAGAAAAGCATCGTC 528 29 100.0 31 ............................. ATAAGCTCAAGCGAGTTGACCTTAGATAAAT 468 29 96.6 31 ............................C TAATTACTAACCTTTAAGGAGAGCAGTCATG 408 29 96.6 31 ............................T ATATGTTTATACGGTTAATAAATCAGTACAA 348 29 100.0 31 ............................. AGTCTCGGTAAACGTAGAGATAGAGATACGC 288 29 96.6 31 ............................T GTTAGGAGCCAAAAACTCACTTAAGATAGCC 228 29 100.0 31 ............................. TAGTCGCTTGCGGTACGATCTTAGCTGCACC 168 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 11 29 98.5 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCACGACACTATTGCGGATATAGCCAACAGCTACCTCGATCATGGAAATTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCTTTACCTATTCTACACGGTAAAACACGTCGTGGAGGACTAGTCTTTGACCTAGCGGACCTAGTTAAAGATGCTTTTGTAATGCCAATCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAACCCAAATACCTTATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : AAATCAGTTTTAAGGGGCTTTGTTGCACAAACCTATCTCTAAAGGCTTATTCCACAATATAATTTTGAGATGAATAAGCCTACACCTAAAATCTACCGTACAACCAATTGGCCCACATACAACCGAGCTCTCATTAATCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [65.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 6325-6831 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFKN01000054.1 Acinetobacter baumannii strain 4300STDY7045752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 6325 27 75.0 27 T...C.-....A......AG..G..... TTAATGCTTAGCATTGATTGATATGTG 6379 28 85.7 29 ...T.C.............G.......T ATAGGGCAATTCTGATCTTAAGTATTTAT G [6384] 6437 27 78.6 39 ....GC..C.AT...-............ GCCCTATTTTTCATTTTTCCTTCAAAAGTAATTTTGAAA G [6455] 6504 28 85.7 32 C..T......A.C............... CAGCGTTCTGCTTTACCGTTTACATATCGCGG 6564 28 92.9 32 ............CC.............. TTGCTTAGGCAAATGCACTGATTTTAAAGAAG 6624 28 100.0 32 ............................ TATCATGAACATTGTTCCTTGACCCACGGACA 6684 28 96.4 32 .........T.................. ATTCGATAGACTGATTCTATAAGCTTATTTGC 6744 28 96.4 32 ...G........................ TGAGGGTGCCACACATTGGCAGGCTGGAGTGT 6804 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ======================================= ================== 9 28 90.1 32 GTTATTCATCGCATAGATGATTTAGAAA # Left flank : TGCTGCTAAAACTGCGCTAAAGCAATTCAAATGCTCACCTAAATCTACTCTATTTTGAGGATATGGCATGAATGAGCAACCTGTTGTTAGGTTGTGAACTTCATAATCGCCATTTGCTTGAACATTTTGATTGATAATGAATTTAGACATAGTTCTTACTCCTCACAAATAGTAGTGATCGGAGGTAGATCTAGGCCGTGTTGTAGAGTCGAGTATGACAAAAATTTAAAATGTTGTGCTATCATTTGGATAGTCCTTATTTAAGTAGTAATAGCTTTGAAAATGGACAAAAGCAGGTATGAAGTTTGGTCACGGAATACCTGCTTTTTTTTATGCCTTTTCATAAATTAAGATATATTTGTCCAAAATCCTTGTCAAACATTATTTTTATTTAAATAAAATTTTACTATCAATCTTATCTAAGTATTAAGGGTAGTGATTTTTTAAATGAATATTAAGTATTCCTAATTAAGATTTGTTATGATACAACTCTTACATAG # Right flank : AACATTCAAAGAGGCTCATCGAATCCAATCGAATTTTATCATCGCTCAGATGATTCAAAATTTCTCTTTCAAAATTTAAAACGACATGTTTTGTCGTTAAAAGGCCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAATATTATATTTTTATTACATTCGAACTTTAACAATAAACTATGCATGTCATTCTCATCTCTGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCATCTTGGCAAGCACCAATGACAATGGAAGGTTTAAAAGAAATTCGTAGCGCATTAAAAAAAGTAGCCACCCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTTGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAGAAACAGCAAAAGTTATTGATGCTAGATGAATGGG # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.50, 5:0, 6:0.25, 7:-0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 154551-151941 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFKN01000005.1 Acinetobacter baumannii strain 4300STDY7045752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154550 29 96.6 31 ............................T GCAGTTCTGCGTTACGTGTTTCAGGATGCAT 154490 29 96.6 31 ............................T AAAGGGCGTGGCAAAGGCATTACGTGTGAAA 154430 29 96.6 31 ............................C TCTACACCTTCGCGAATAAGTACGCAGGGCT 154370 29 96.6 31 ............................T TCATGCGTGATGCAAAGCGACTTGCTGCAAT 154310 29 96.6 31 ............................T GAGCAGGTCGGTTATTCTGAACCTGAAAATA 154250 29 96.6 31 ............................T CCAAAATACCTTTGAGGACCTTGTAGAAGCC 154190 29 96.6 31 ............................T AAAACCATTGTTACTAGATGTACCTGTATTT 154130 29 100.0 31 ............................. GTCAGGCCCTAGCTTTTGAGTCACACTTTCG 154070 29 96.6 31 ............................T TCTGCACTCTGAAGATAAACATTACAAGTAA 154010 29 100.0 31 ............................. CAAGCGATAACTTGCCGCCAATCACTGTTTA 153950 29 96.6 31 ............................C TCAAGACATCAAGATCAATAAGACAGTTGAG 153890 29 100.0 31 ............................. ACAACGCAGTATTTTTGCGATGTTGCAAAGC 153830 29 96.6 31 ............................T AATGCTCAAAGTTATAAAAATAAGACTCCTG 153770 29 96.6 31 ............................T GTTGGGCCAATAATCAGAGTGTGGCCTACAT 153710 29 96.6 31 ............................T CAAGGATTGACTCACAAGATCGGTAATTGTA 153650 29 100.0 31 ............................. GTCTGACCATGGCCCGATATTCCCGATCCGG 153590 29 100.0 31 ............................. TTAGAACCAAAAGTTACTTCAAAAGAACGAA 153530 29 100.0 31 ............................. ACTATTCCTAAAATAATTGATACATAGATAA 153470 29 100.0 31 ............................. TCAACAACAATGGTTAAACTGCCATTAATCA 153410 29 100.0 31 ............................. AAGACAGTATTTTGGTAGCGCATCTCCTGCC 153350 29 96.6 31 ............................C TTGTACGAGCGTATTAAATGTACCTTCATCA 153290 29 100.0 31 ............................. ACCGATGAAGCACGAAACACAATCATGCTTT 153230 29 100.0 31 ............................. TACGGCGGATGATGTGGTTCGCCTTCATAGC 153170 29 96.6 31 ............................T TTAGCCACAGCACCGTTTACACTTGGAGCAG 153110 29 96.6 31 ............................T AGTGCACGTAGGTCATGAAAAGATGGGCGTT 153050 29 96.6 31 ............................C AGTAACAGCAAAAACAAAAACAGTAACTAAA 152990 29 96.6 31 ............................G TACAGGGGAATTCACGTAGTGCTGGAACAAT 152930 29 100.0 31 ............................. ATCACCATCATCGGTGGCATTAGCTTCAGAC 152870 29 100.0 31 ............................. TCACCAGTGCCAGTGCCAGTGCCAGTGCCAG 152810 29 100.0 31 ............................. ATATTCAAGAACCAGTTTCAAATATTGTTAT 152750 29 100.0 31 ............................. TCTCCCATTCTTCATCTGACTTCAGAAAATC 152690 29 100.0 31 ............................. GAATGTCTAAAATATCTGAGGCATCAGCAGA 152630 29 96.6 31 ............................G TCATCAATACGCTTCAGTGCATCAATGTCAT 152570 29 93.1 31 T...........................T AACAGAAGCGCAAAAAAAAGCGTATATCATT 152510 29 96.6 31 ............................T TCACCTGCAAAGTAAATCGCATAAATCTCGC 152450 29 100.0 31 ............................. ATTTCAGCGTCAATAGTCTCAATATGATCGA 152390 29 100.0 31 ............................. TCCCGGAAGGCTTGGCTAAACTTGTACTTTT 152330 29 96.6 31 ............................T CACAGTATGAAAAGATTGGTGATGCTTCGGA 152270 29 100.0 31 ............................. CTTGATGCAGGTCAGTGCAATAAAAATGATC 152210 29 96.6 31 ............................G ACATGGCTATGAAGTTTTATACACATACAAT 152150 29 100.0 31 ............................. CAACAACGCTGTCAACCTTTAGCTAATAAAT 152090 29 100.0 32 ............................. TTAAGCCTTTGATTCCATTGGGTTTTTCTTAG 152029 29 100.0 31 ............................. AGAAAGGTCTAGCAATTGGGGCTGTAGGTAC 151969 29 89.7 0 ........................AT..T | ========== ====== ====== ====== ============================= ================================ ================== 44 29 98.0 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GTGATTCACAGGTGCTCGGTGATTTACTTGGTCAAATACCACTTGATGAGCGAGTAGATTCTGTCTATACCGATGGAGCCTATGACACTAAATGCTGCAGACGAGTGATCTCAGATCGTCAAGCATATGCGGTGATTCCGCCAAGAAAAAATGCGAAACCGTGGAAAGATACAAAAGTTCATTCGCAAGAGAGAAATGAATTACTAAAAACAGTTAAGCGTCTAGGAAGAGCCCTTTGGAAAAAGTGGTCTGGTTATCATCGGCGAAGTTTGGTCGAAACCAAGATGCATTGCATCAAATTATTAGGCGATAAACTCTACTCAAGGAATTTTGACAGCCAAGTGAATGAGATCCATGCACGTGTAGCCGTATTAAATAAATTTACAGAATTAGGCAGACCTCATACCCAAGTTGTAACCTAAATTTTAGCAACTTAGGAAAACTTTACCTTCAAAGGCTTTATGCAACAAAGCCGTTTTAAGGTGTAACTGGTGCAATCA # Right flank : TTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAAGATGGCGGGAGTTGAACAAATATTTTAAATTATTGATTTTATAGTTACTTTTTCAACATATAACATGCTGGTATAACGCATGTATAACATTTAATTTTGATTAAGTATGATTAACAACAGTTTGTTTTTTGTTCAAGTCCGATGGCGTCAATTGAACAAATATAATAACATACTGATTTATATTAATTAATTTTTATAAAAAAATCCCAGTGTACATGACAGTGTACAAATTATATGTTGCTGGCCTATTTCCTTCGGGTTTGGTTGCTATATACAGAGTACAACTCATGTATTAAACACCTTACTGGCAATCCAGTAACACTACCCTACTCCACCACTTACACGGCATCACTTCGACATCTCGTCAACGCAATTTTGCGTTCGGCTTTGTTTTCAAAGGTTTATCCAGAATTAGACGCACCTAAAACCCGATAAAACCCTATCAA # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24103-25632 **** Predicted by CRISPRDetect 2.4 *** >NZ_UFKN01000025.1 Acinetobacter baumannii strain 4300STDY7045752, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================== ================== 24103 30 96.7 30 .............................T CTGGCGTGACAGTAAAACCTGTACTTACTT 24163 30 93.3 30 ............................TT ATGGTTCGCCTCAATATGCTAATCCACCTT 24223 30 93.3 30 ............................GT GAAGATTATGCAAGACGTGTCTACGGTCGA 24283 30 96.7 30 .............................G AAACTGCCGCATTGAATGCAATCCAGTTTA 24343 30 93.3 30 ............................GT TGTGTCATTTGCAGGTAGGTTAAAGGTTTT 24403 30 93.3 30 ............................TC ACCGTATGGATTCATAACAATGATTGACGT 24463 30 96.7 30 .............................T TAAGAACCTTAAACACCAATATGGTAAGTA 24523 30 100.0 30 .............................. TACTTGTCGCCTAAAGTCTCAATTCCGATT 24583 30 96.7 30 .............................G TATATTAACTGTTTTTTCGTACTTTGTATT 24643 30 100.0 30 .............................. GCTAAAACGCCTTCAAGTTCAGCCTGAAGT 24703 30 93.3 30 ............................GC AAGCGACTGTTGTCGTTTGGGGCTATGTAA 24763 30 93.3 30 ............................CG TATCAGCACTACGAAACACTGTAGAGCGTC 24823 30 96.7 30 .............................T CAGATACCGCTTGAAAAACTTCTGAATCGG 24883 30 93.3 30 ............................TG TACGTCAAATTACTTCTTATTGTAGTTGGG 24943 30 93.3 30 ............................TG TAAAACCGAATCCCAAGCTGAATAGGTTTT 25003 30 93.3 30 ............................GG ACATGTGAGCTTCACACCATCCTTCAGGCA 25063 30 93.3 30 ............................TT GTTGCGGCTCTCGCATGATGTGGTTTGATC 25123 30 100.0 30 .............................. CTGAAAAGATGTTGAGTGCAGGTTGTTCTT 25183 30 93.3 30 ............................TT GATGCTGAAAACTTCACAGCAGGCAATCCA 25243 30 93.3 30 ............................TG TAAAGGATGTGAGGAACGTCGTGAGTGGAT 25303 30 100.0 30 .............................. CTGACTAGTGATTTGAGGAATGTGCTCACC 25363 30 96.7 30 ............................C. AACACAGCATTATTGGGCCTTCAATACGAT 25423 30 96.7 30 ............................G. TGCAGGCGGAGTCTGCTATGCGACTGGTAC 25483 30 96.7 30 .................T............ ATAACCACGGTTATGGTAAGTCACTTTTAC 25543 30 80.0 30 .......A.A.....T.T..........GC GTTCAGGTTGAGGAGATGAAGTGATGTGAT 25603 30 63.3 0 ...T...A...T.....T..C...AGCGTT | ========== ====== ====== ====== ============================== ============================== ================== 26 30 93.7 30 GTTCATGGCGGCATACGCCATTTAGAAAAA # Left flank : GGCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACTAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAAAAAACAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTTAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGCAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAATAGACAAAGCCGAACAGCCTGCTGAAGTTGAACAGATTAAACAGTTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAA # Questionable array : NO Score: 5.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.21, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //