Array 1 243-454 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIHB01000241.1 Klebsiella pneumoniae strain TUM14022 sequence241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 243 28 100.0 33 ............................ CTGCAGCGGGACATCATTTAGCGTGATGACATC 304 28 100.0 33 ............................ TGTTAAGCATGGTTTTGTCAGAGTATATGGACT 365 28 89.3 33 ...........G..T..........G.. TAAAAAAGAAAAACTCTCCGGTTCCCTGTTCGG 426 28 82.1 0 ......A.....C.T......C.....T | C [447] ========== ====== ====== ====== ============================ ================================= ================== 4 28 92.8 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : CCACGGAAGGCAAACGTCAAGACGTCGCGCTATATTCTGGGGATGACAAAAGCGTTTGGCGCCTGGCTATGGATCGGGCAGGCCAGTAGGGTAGGCCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATAAAGGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTATCGTAAATCTGGTGTTTTAATACGCCGCTAAACACAATATGCTGGTG # Right flank : CGTTTGATAAGGAAATTAAAATGAAAAGAGCCGAAGTAGACGTTGTG # Questionable array : NO Score: 5.50 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 188257-184268 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIHB01000004.1 Klebsiella pneumoniae strain TUM14022 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 188256 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 188197 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 188136 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 188075 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 188014 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 187953 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 187892 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 187831 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 187770 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 187709 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 187648 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 187587 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 187526 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 187465 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 187404 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 187343 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 187282 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 187221 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 187160 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 187099 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 187038 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 186977 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 186916 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 186855 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 186794 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 186733 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 186672 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 186611 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 186550 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 186489 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 186428 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 186367 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 186306 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 186245 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 186184 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 186123 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 186062 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 186001 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 185940 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 185879 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 185818 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 185757 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 185696 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 185635 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 185574 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 185513 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 185452 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 185391 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 185330 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 185269 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 185208 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 185147 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 185086 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 185025 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 184964 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 184903 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 184842 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 184781 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 184720 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 184659 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 184598 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 184537 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 184476 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 184415 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 184354 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 184296 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 66 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : GTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //