Array 1 37-430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000101.1 Vibrio cholerae strain 984-81 DA89.contig00101, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 33 ............................ CATGCAGCACCTTGAGATCAGGCTTCTTCGCCA 98 28 100.0 33 ............................ CAAAAACATGGCTGCTGGACTCATCTGGAACCA 159 28 100.0 33 ............................ CCACTATGAGGGGTTTGAGCTTGATTCCAAGGT 220 28 100.0 33 ............................ TGCATTGCCGCTTGGAATTGGTCCTCAGTAAGA 281 28 100.0 33 ............................ TCGAGAGTCGTTAGGTTCTTGTCGCAGTATTCG 342 28 100.0 33 ............................ CATGGTTACGCTGCGTGCCGAAGAGCGCTTGGC 403 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TTCTGGTGCGCGTCCGCGGGGCGCATGCCGAGCTCAG # Right flank : CAAATGATTTCAACTTGCTCTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [16.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 425-31 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000102.1 Vibrio cholerae strain 984-81 DA89.contig00102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 424 28 100.0 33 ............................ TTAGATAAAGAAATCGACAAGGTGATAAAAGAG 363 28 100.0 33 ............................ CAAAAACCAAAACTTTCTCACTCAAGCGGTTTA 302 28 100.0 33 ............................ TTGTTGGGTACGTAGTCGAGTGCAAGGCATGCG 241 28 100.0 33 ............................ TATACCGTTTTTCAAAGGAGCACGATTTGAGGT 180 28 100.0 33 ............................ TTGGCTCATGCAAAGTAGCCACCAGCCAAGGCC 119 28 100.0 33 ............................ TAAAGCTATGACAACGCGGAACAGACTTGTTTG 58 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : ATTTCAACTTGCTCTGGTTGTCAGCG # Right flank : CTCATCGAGTGCTGATGTTAGCTCTATCTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [25.0-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35-366 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000109.1 Vibrio cholerae strain 984-81 DA89.contig00109, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35 28 100.0 33 ............................ CGGAACTGTTTCAATTACTCGTTTACCCGATAT 96 28 100.0 32 ............................ TTAGTCCTTTTGGCTATTTCAGCTTTGGCGGT 156 28 100.0 33 ............................ TATTTGCTTATCTACGCTTTCAGGGTCTTGTGT 217 28 100.0 33 ............................ TACCGTTTCACGGGTTACGCCCATATTGCGGGC 278 28 100.0 33 ............................ CGGGCAGGCCGCCGCCGCAGTCCATTAGCTGGC 339 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 6 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTAAGTATCGGCTTTGTCTGTTGGCTTTTTGGTTG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [33.3-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 61410-59343 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000017.1 Vibrio cholerae strain 984-81 DA89.contig00017, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 61409 28 100.0 33 ............................ CATACGTGGTCAGCCTCGAAACTAAGAAACTTT 61348 28 100.0 32 ............................ ACGAATTGAGTGTGCTCAGGCATACAAAACAA 61288 28 100.0 32 ............................ AACTAAGGAAAGTACCATGAAAGAAACAATCT 61228 28 100.0 32 ............................ GTTGTGTTCAAATGGGCTAAGGCTTCAATCTT 61168 28 100.0 32 ............................ ATCAGTGACTAGTGAACGATAAAAGCGAAATA 61108 28 100.0 32 ............................ TTTCTCAAGGTGGCCGCGCAGGCAGAGGCAGC 61048 28 100.0 32 ............................ ACTTTCAAGCAACTTTTGGAAGGTAGCAGGAG 60988 28 100.0 32 ............................ TCAATAGCACATTTTTTGCGTAGCTGACGGCG 60928 28 100.0 32 ............................ TTTCAGGCATTGAAGCGGCCGAACGTGTTACC 60868 28 100.0 32 ............................ ATATGCTTTTGTTTTGTATGCCTGAGCACACT 60808 28 100.0 32 ............................ GTTTTCACCTTCACAGTTAAAGGGGTCAGTAT 60748 28 100.0 32 ............................ ATTCCGGCGTATTGACCGCATTGCTTGACCTT 60688 28 100.0 32 ............................ ACATGGAAGCCACATACAACACCGACCCGATG 60628 28 100.0 32 ............................ GATCGAATCGAAGCGGGAAAACCTAGCGAGAA 60568 28 100.0 32 ............................ ATTGAGCGCCACATTGGCCGCTTCAATACACC 60508 28 100.0 32 ............................ ATTGATGCAGGCGTGGCTGCGTTGTACGCAAA 60448 28 100.0 32 ............................ CGCACCCTCTCGCAGCTCGTCAAGCGTCCCGA 60388 28 100.0 32 ............................ CATTCGCCAATCTTCTTTTTATCTTCGCATTC 60328 28 100.0 31 ............................ AATACTAAAATCACCGTAAGGGGTTTTAAAA 60269 28 100.0 32 ............................ ACAAACAGTGAAAGATGCACTTACCCATTACA 60209 28 100.0 32 ............................ AACGACTTCACTGGCAAGGCTGGCAACGGTTC 60149 28 100.0 31 ............................ AAGCCGAATCATATTTGATGATCGCCTAACC 60090 28 100.0 32 ............................ TGGCTAATAGAAGAGTCATTTAACCCAGAATA 60030 28 100.0 32 ............................ TCTGCGAACCTTTTGGCGCTCGATGTCGTTGA 59970 28 100.0 32 ............................ TTCAATCAGCATGCGGTCAATGAGCTTCTTCG 59910 28 100.0 32 ............................ AGCAGGTGCCGCCATTCTCTTTTCTTATCCAG 59850 28 100.0 32 ............................ GCTTCATAGTTCGCTTCGGTCAGTGCCGCTTT 59790 28 100.0 32 ............................ ATACAAATTCGCGCCAATGGCCGCGACTTTAC 59730 28 100.0 32 ............................ TTTTGCTCAATAAATGCGGCTCCCATGTAAAT 59670 28 100.0 32 ............................ TGCTTTGGGTTCCACCCAGTCAGATGGCCGTT 59610 28 100.0 32 ............................ CGCTGGGCCAAAAAAGACCAGGATATCTTTTT 59550 28 100.0 32 ............................ GCTCTCGATATCGGGCACACCCTACACGCGCA 59490 28 100.0 32 ............................ TAGCAACGGCTCGAACTCTAGCCCGTGTTCTT 59430 28 100.0 32 ............................ TTGAAAGCGCATACGGTAAGACAGTGTTTGCT 59370 28 89.3 0 ...........C.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 35 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTAACCATTTATTTTTGATCTTTAAAAATACGCTTTTAAAACAAATAGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : GAAAGTAAATCAAACGAGGCAGTTCACTTTCTAGATTACGTTAAGGTTCTTACGTTCTGCTACGTATATTTATTAGGGTTTTCTTAAATGGTCTTTTCCCAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCCAGTTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATCGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGCCAAGTTTTACTCAGGGCGAGTTTTGCGTCAATAAAAATCCTTTTAGAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCGCTACGCACTTGGTTGTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 661-22 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000031.1 Vibrio cholerae strain 984-81 DA89.contig00031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 660 28 100.0 33 ............................ CCAGGGTAATTAAGAAACATGATTTTATTCCTC 599 28 100.0 33 ............................ TCAGGTATAACAGGAGTGTTCTGGAGTACATCT 538 28 100.0 33 ............................ CCACAGTGGTTGCGATTGTAACAAGTTTGGTTT 477 28 100.0 33 ............................ TACAGTCACGAGGTGAGACACCAATTTTTAGGC 416 28 100.0 33 ............................ TATTAACATTGTATTATTTTAGATCTCCTTTAT 355 28 100.0 34 ............................ CAATGTCATTGGTGGTGTTGGTGGTCTCGGCCAG 293 28 100.0 33 ............................ TTAGTTAGTGTTGGCTCAGAAGGCAACACTGAG 232 28 100.0 33 ............................ CTATCAAACGTCGCTTTTTCGCTGACTGACGTC 171 28 100.0 33 ............................ TCTGCTCATTACGTGGACCAGGTGGTTTAGGTA 110 28 100.0 33 ............................ TGGCTAACGAAAGTGCAAGCTGTTCTTGATGAA 49 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACCCGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATTTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : CTGTGGTTGGGACAAACAGCAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [18.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 7-523 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000033.1 Vibrio cholerae strain 984-81 DA89.contig00033, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 7 28 100.0 33 ............................ CGTGCTCCTGCCTGACACTATCGTCGACCTGGT 68 28 100.0 33 ............................ CCCAATCATAGTCGCGTGCGATTTTAGGCAGGT 129 28 100.0 33 ............................ CACCCCAGACTTCACTTTTAGTGTGAAGCCATT 190 28 100.0 34 ............................ CTACGCCTAAGCCAGATTACACACCCGATTATTG 252 28 100.0 33 ............................ TTCTCGTGATTGATGCGACGGCGCAGGCCATTA 313 28 100.0 33 ............................ TCAATTTCATTGCCGCCAATGGTTGCCACGTTT 374 28 100.0 33 ............................ CTTATACTAGACAGTACCAAATCACTAAAAGCA 435 28 100.0 33 ............................ CCACGCTCATCTCTATGTCGCAAGATGTTTTAC 496 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================== ================== 9 28 96.8 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : ATGTCGG # Right flank : AGTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATAGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTCGCTATAAACCTAAACCAGAGGGGATTTGTGACAGCAGCTATGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGGTTACGT # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [5.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 728-27 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000078.1 Vibrio cholerae strain 984-81 DA89.contig00078, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 727 28 100.0 33 ............................ TCAATGGCGGCAAGGAGGGGCTATCTGACTCAC 666 28 100.0 33 ............................ TTACTACATGGTGGGTGTGAAAAATCCAACCAC 605 28 100.0 33 ............................ TGATGATATCGATCACCTGTTGCTCAGTAAGTC 544 28 100.0 33 ............................ CGCACAAGTAGAGACGTAAGTATTCGCACTGGT G [527] 482 28 100.0 33 ............................ TTTCATATAGTCTGAGTAAGACAAACCAAGCTC 421 28 100.0 33 ............................ TCAAGACAATATGGTGCTGAGAATCGATAACTG 360 28 100.0 33 ............................ CTTATGATGAGTTCATGGCTCGCATCAAAGCCC 299 28 100.0 33 ............................ CGCACAACAGGCCTGCAACCCTTGATTCAAATG C [294] 237 28 100.0 33 ............................ CGAGCTTGAATATGCCCTTTCTGTCGCGTTTTT 176 28 100.0 33 ............................ TAATAACGCCGTTAAGCATGGGCTTTATGCGCG 115 28 100.0 33 ............................ TAAAGTATTGCCGAATGTCAGTAGCCCCATAAC 54 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GCGGTGTTGTCATAAATAAAAGCGTCACTG # Right flank : CCTTCTCCCAGCCTTCGAAGCGGCACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37-672 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000082.1 Vibrio cholerae strain 984-81 DA89.contig00082, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 37 28 100.0 33 ............................ GACTTTCAGTTATCTAAAGCCTCAGAGCAAGCC 98 28 100.0 32 ............................ CGGTTACCGCGCTTGCGCAGGTTCTTGTCTCT 158 28 100.0 32 ............................ CCTCATCTTTGGCTTTTTGAGCTCATCCGCTG 218 28 100.0 33 ............................ CCCGTAAACTGGACTCTTTAAGTCACGGAAGGT 279 28 100.0 33 ............................ CATTGAAACCTTCATCCTTTAGCTGGATATAGC 340 28 100.0 33 ............................ CATCGAAGTCAAAGGCATTAACCATACTTTCTG 401 28 100.0 33 ............................ TTAGCTAGCAGCGGAAGCGATGAAGCCTTTGAC 462 28 100.0 33 ............................ TTTTATTTCTTCTGTTCGTTTCGAAGGTTCATT 523 28 100.0 33 ............................ TCTGACCGCTCAGGCGAATCTGTTTTCTATGTC 584 28 100.0 33 ............................ TATTACCTATTCAAAAGCTGACCGTGTATTTCG 645 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : TTCTGTGGTTGGGACAAACAGCATGAAGTGTTCCACG # Right flank : T # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [31.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-669 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000081.1 Vibrio cholerae strain 984-81 DA89.contig00081, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 30 28 100.0 33 ............................ TCACGTTTGGGACTCCATTCTAAGCGAGGAGGT 91 28 100.0 33 ............................ CAAGCTCATGGATGATAGCGGCCTTGGTTGCTG 152 28 100.0 33 ............................ CTTTAAAGAAAGCGGTTTGTGATTTTTTTGACT 213 28 100.0 33 ............................ TATTGATGAGGCTCACATGGTTGAGTTTTCCGA 274 28 100.0 34 ............................ TGCGAATGGATTCACAACTCAGCCGCCTAGTTTT C [283] 337 28 100.0 33 ............................ TACGGTTATAGTTAGTTTGTACTAATCCTATGT 398 28 100.0 33 ............................ TACTAAGTTTACTAAGGGTGAGTGGGTCGCGGA 459 28 100.0 33 ............................ CGCCGTGATAAGTTCCTGAAGGCCATGAGTGAT 520 28 100.0 33 ............................ CTTAGGCAGCAATCGTAAGCTGTACCCGTTTGT 581 28 100.0 33 ............................ CACAACTGGGGCACACACTCATGAAGTTCCAAT 642 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 11 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GACGTTTGCTCTATTGAACAGTTGTATTCG # Right flank : CTGATTTGCCGACCCACAAATCAGACTCACGACGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 601-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000085.1 Vibrio cholerae strain 984-81 DA89.contig00085, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 600 25 89.3 32 ---......................... TTTTGCAGATAACGTCAGTAAGGCTAAGGAAC 543 28 100.0 33 ............................ TTGTCAGGCTTTGCAACTTGCCCGCGCACTGGC 482 28 100.0 33 ............................ TTTTGCATGCAAAATTTTAACACGAGGCAAAGC 421 28 100.0 35 ............................ TTATCTATTCATACCAACTGAGGAGCGAAACAAAA 358 28 100.0 33 ............................ CGAGGTTAAAGTAGGCGCACTTGACGACATTAG 297 28 100.0 33 ............................ TCAACTTATGCACATCCACGCAAGCACGCGCCC 236 28 100.0 33 ............................ TGATTTGATTTTGATTTACCCAGCAGTAGACGT 175 28 100.0 33 ............................ CAACCGTCGTCAGTCTTGGCCGCTCACGTTCAC 114 28 100.0 33 ............................ CCATTTCTTTCTTATTCACCATGTGTCCCTTTT 53 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ =================================== ================== 10 28 98.9 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : | # Right flank : CTTGAAAGTTCTCAAAGAGATTGGCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [25.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 21-536 **** Predicted by CRISPRDetect 2.4 *** >NZ_JMBM01000086.1 Vibrio cholerae strain 984-81 DA89.contig00086, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 33 ............................ TAAGTCCCGATTCGGGACAAATCAAGAGGAGTT 82 28 100.0 33 ............................ TCCAGCCAAGCACCAGTAAAAGTAAAATCCGAA 143 28 100.0 33 ............................ TACGCACCTTGTTGCAGGTTCGAGTCCTGCACG 204 28 100.0 33 ............................ CCATTCTTTATGCCTAGCTTGGCATTCCATACT 265 28 100.0 33 ............................ CACCATTGATTACTCTTTTATGAGTTAACCAAT 326 28 100.0 33 ............................ GAAATACATTGGGTGATTTTGTTTATGTTTTCT 387 28 100.0 33 ............................ TAGTTGTTGATGTAAGCAGTGACCGCCATGCCG 448 28 100.0 33 ............................ TTGCTCACCCTTGCGATTTGTGACTTGTTCACC 509 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : GCGCGGCGTGTTGTTGGGTCG # Right flank : CAAAAATCCCCCTTGCCAATGCAGCAGGAAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.40,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //