Array 1 164582-165509 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAC010000022.1 Pectobacterium brasiliense strain NAK:435 CFILONJO_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164582 28 100.0 32 ............................ AGAATTCATACGCATTTCCGGTTACGCCATCC 164642 28 100.0 32 ............................ GGAAACCCAAAGCCATCACTACGCTGGTGGCC 164702 28 100.0 32 ............................ TTACTTCCCTGAGGTGGAACTAACAGCATTTT 164762 28 100.0 32 ............................ CAGCACGGCTTTACTGGTCTGTGCATCGCACC 164822 28 100.0 32 ............................ TAAAACCATCACAAAACTATCACAACAGCATC 164882 28 100.0 32 ............................ CCGCGCGGGGCGTCATGCAGAAAGAAAATCCG 164942 28 100.0 32 ............................ GCCGCCGTGCTGCTGCTGGGCGTAGCTCTACG 165002 28 100.0 32 ............................ TGTGCCGCTTCCTGCGCCGCTTGCGCGGCTTC 165062 28 100.0 32 ............................ AATGCGCAGTTGGAAGCGCAAAAGACACAGGC 165122 28 100.0 32 ............................ TGATTACTCCGGCGCGGTTGGCGATGGGCGGA 165182 28 100.0 32 ............................ AACAAACCGATTAGTGAAGTGATTGCTGATTT 165242 28 100.0 32 ............................ AGCCCCGCCGATAGACCCCGTCACATACGGAA 165302 28 100.0 32 ............................ GGCAATGGATGCCGTGCTGGCCTCCGCTGATG 165362 28 100.0 32 ............................ CATGCCCGAAACGCCTCAAACGACTTAACCGC 165422 28 85.7 32 .....T.....T.C...T.......... GAAATCGTCGCCGATATCTTCAGCACCGGAAT 165482 28 82.1 0 ..C........A.C......T.A..... | ========== ====== ====== ====== ============================ ================================ ================== 16 28 98.0 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : ACATCCTGACGTTCTGTCATAAAGTCAGCGTCAGCGCGATCTTCTTGCAAAAACGAATGCCAATTGGGTTTAACAGGACGCAGCATGATGGTATCTCCCTCACGCACAATCTCCAGTTCGTTGACCCCTTCAAAGTCCATATCACGCGGCAAGCGAATGGCACGGTTGTTACCGTTTTTAAATACCGAAACAATACGCATGAGCACCTCCTCCTTAATACAGAAATTCAGCCAGCAACTTACCGTTTATTATTGCTGGCTAAAACATAGGCTAAGTATAGATATTAATCACTCGATTGTATATCCATAGCATATGCAGATACCTGGCATAGGCCTGTCGTCGATAAATAAAATCTTTGCCATACGTTCATGACCCTTTTTTTACGCATCGTCGTAACTCATTGATTTTAAATTTAGATTATCAGCTCTGATAAAAAAGGGTTTTCGGGAAAAATGGTTTATTTCCTTTTAAAATTAGGCAACTACCGTAAAATATGAACG # Right flank : AATAAAGCTCTCCTAAAATCAGGAATAAAAAACTCATAGGCAACGCGGCCTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGATTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCCTGACCAATCAGGAGCTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGCCGCATCGCGCTAGAACAGGCACAGCTGATTCTTGGCTATCATGCCCGTCTGTCGCCGAACGCCGTCGGACTGGAATGTCTGGGATTAATTGAGGTGCGACTGATCAATCACACCAGCGAATACGTTGAGCGTTTTCACCAGATGCTGGGGGAAGTGGATGCCATCATCGACGCCTATAAAACCACGGGCGATGCCGATTACCTGTTAAAAGTCGCCGTGGCAGATCTGCCCGGACTCAGCACGCTGATTAGTCAGATTCTGTCGCAGAACAAGAGTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 173013-171439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAC010000022.1 Pectobacterium brasiliense strain NAK:435 CFILONJO_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 173012 28 100.0 32 ............................ GATCCGCGTCAGCGGGGCGGGGCGCTGTACTG 172952 28 100.0 32 ............................ AAGCCAAATTATTTAATGATTGAATGATATTA 172892 28 100.0 32 ............................ AGATAGAAAAATTGCTAACGGTCTTTCTTGTG 172832 28 100.0 32 ............................ CCCAAAATAACCCGTTCGCACCTTTCTTCTTG 172772 28 100.0 32 ............................ TTGATCCCATGCCGTTAATTATACGGACAATT 172712 28 100.0 32 ............................ CTGAAGGACGGCCATACGACGCGGGGCGATGC 172652 28 100.0 32 ............................ TTGTAGCTGTTCCACGCATCGCGGCATTTTTC 172592 28 100.0 32 ............................ TCAACGAGTATAGCGCCGTAGTTCGTATAAGA 172532 28 100.0 33 ............................ GAAATGCAGAAGCAGCAGGCGCAGCAGAAGCAA 172471 28 100.0 32 ............................ TTTCATCGTCCGTGCCTCCGATACCTGCGAAG 172411 28 100.0 32 ............................ TGACAGCACTCGTCAGTGAGATGTGCTTTAAC 172351 28 100.0 32 ............................ CGCATCGAGAACGAAACCACGGAACGGGAGAG 172291 28 100.0 32 ............................ TGAGATGAAACTAATTCCTAGGCCGTTCGTGT 172231 28 100.0 32 ............................ GTCGAAGCATACGCCCTAAAAAAAGCAACTGA 172171 28 100.0 32 ............................ GCCCAATCCGAACGATCCCTCACCGCTATTTG 172111 28 100.0 32 ............................ ATCGGCTGGTTTTGGTTTGATGGATCGCGGTC 172051 28 100.0 32 ............................ GGGGAATTCATCTTCCAGCTTCATTGTTGCTG 171991 28 96.4 32 ...........G................ TGTTACCGCTCAGCGCAATAATCAGCGTTATA 171931 28 100.0 32 ............................ TAAATATGTGGGTTTCTGCTGCGTCAACGTTT 171871 28 100.0 32 ............................ CTCACGCGTACCCGAAGAAAGAAGTAGGCTGG 171811 28 96.4 33 ...........C................ ACGTTTTGAACGGCTCCTCTTTGTTTGCGATGA 171750 28 96.4 11 .............C.............. CTCGACCTGCG Deletion [171712] 171711 28 78.6 32 CGG.....G.A.G............... TGATGAGGATCGGCTCGCTAAAATCGGATATG ACTAC [171695] 171646 28 96.4 32 ...............A............ AAGCCAAGAGCAACAACTCGCCAATGATCCAC 171586 28 100.0 32 ............................ GTGGCAGCAAAATTACCAGCCACAGGCTACGC 171526 28 96.4 32 ...........G................ ATTTCGATCCCCGTTGAAGCGCCGCCGCCACC 171466 28 78.6 0 .............C......T...TCCC | ========== ====== ====== ====== ============================ ================================= ================== 27 28 97.7 31 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGTGACGGAGGTGCCGGTTCCCAACATCACCACGCTGGTATTGGCGATGGGAATATTCCAGTACAGAGACTGGTTTCCTTCCTCCGTCACATATTCGACACGTCCACCGTTAACGAGAATGCGGCAATGCTGGAGATAATAAACATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAGTCCGAAGGACTAAAGGCGTTATCCATAATGTATTTTCTGCCGCAATCGATAATAGCTGTGACGCCAGCGAAATAAATCGCAGGCTAACCAATTGATAAGAAAAAATATAATCTTCAGAAAACTAACGAAAATCAGATTATCACAGTTGTATATGAAAAATTCTGACCGCAAAAAATATTACCCAAACACAGACCCTTTTTATTTGGCCTATTTCACAGGCTTAATAATCAATGAGTTACAGATGAGCTGAAAAAAAGGGTTTTTGCAGGGAAAACGGCAATTGCTGCTAATAAAACAAACCGTTAGAGTGATCGGGCTACT # Right flank : CTGTCTTAAGCGCCATTATCTGGCTATTATCGAGGTAACACTATCGTCAGTATTTGATGCGTTATCGTCGTTAAATAACGTGTTTTTGATTCCCCTTTCTCGTAAAATTTTTAAGTAACGGGTTTCTTTGTGTGGAATGGAAAATTGCGGATTGGGCATTATTAACATTTAAAAATCATCATTTTTCCGTTAAAGTAGCCTTACAGGGAAATAGTTCGTTGACTTAAGTAAAATTCAAAGGAATGAGATGCTGTGAAATATGATCCGGTTTTAAAAACGCTTGTGGATGATGACTATCGGCTAGAAGATCATCTTGATTTTAAAAAGCAGCATGCTGATATTAACTATCAGAAATTACATGCTCAACTCAATGAAATAAATAACGATAACATTCATGCCATATTAACTGTGCAGGAAGCGACGTATTTTTTAAAGACGTTATGTACACCAAACCCTAATGAGTCGTGGAAAACGGCCATTTTTGCCTGTACCGATCCTGT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.06, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 181644-182030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACHAC010000022.1 Pectobacterium brasiliense strain NAK:435 CFILONJO_22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 181644 28 100.0 32 ............................ TGAATATGTCATTCAACATCTGCCGCAAATCC 181704 28 100.0 32 ............................ TGAACGCCAGTGCCGTATTTTAAGTCCGTAAC 181764 28 100.0 32 ............................ GCATTGGCCATGCACCAGAAGCTGTTACGGAA 181824 28 96.4 32 ...........C................ ATCAGATAATTTCCTCATCAAACAGCAGTTCA 181884 28 92.9 32 ...........C.C.............. ATCGAGGACGAGCTTTGCGCGTCCATTGGATA 181944 28 92.9 32 .......A.........T.......... ATGACTGATTTATTGAGCAAAGAAAGGATGGA 182004 27 75.0 0 ............GC......-..C.GCG | ========== ====== ====== ====== ============================ ================================ ================== 7 28 93.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGGCTCTATCCACGCTGGAGCAAGCGGCCTGGCTGAAAGGATTGCGGGATTACACATTGATTTCTGAGTGTAAAGCCGTACCCAACGGCGTGAAATTTCGCACCGTACGCCGCGTTCAGTTCAAGAGCAGCGCTGAACGATTGCGCCGACGCTCGGTGAACAAAGGCTGGCTAACGGAAGCAGAAGCCGCAGCACGCATTCCCGATACGGTGGAAAAACGCAGCACCCTGCCGTTTGTGCAAATTAAGAGCTTGTCCAACGGGCAAATGTTCTTCGTGTTTGTGGAACATGGCCCGTTACAGGATGCACCTATCGCAGGACGCTTTTCCTCCTACGGCTTAAGCGCAGAAGCCACCGTACCCTGGTTCTGACCCTTTTTTGGCGACCAGCTGCAAGTCATTGATTTTTAATTGCGGTTGGTCGCCCTAATAAAAAAGGGGTTTTCGAGATAAAATGAACATTCTCTTTAACAATCTGGTGGTTAGATTAAAAACCTAACC # Right flank : GATTATCGGGATGCGTCGCTGCCGCGACGCATTTTTGAGGGCTACTCCCCGTTGAGGGTAACCACCAGCGAGCGGCTGCCGCCGTGGTTGCGGTGCTCGCACAGGTAGATACCCTGCCAGGTGCCGATGTTCAGGCGTCCGTTAGTGATGGGAATCGTTAGACTGTTGCCGAGCAGGCTACCTTTTAGGTGCGCGGGCATGTCGTCGCTACCTTCATATGTATGGCGGTAATACGGTTCATCCTCCGGCACTAAACGATTAAAAAAGCTCTCGAAATCCTGCCGCACCGTGGGGTCGGCATTCTCGTTAATCGTTAGCGCCGCCGAGGTGTGTTTGATGAACACATGCATCAGCCCGACGTTTATCTGGCGCAGTCCAGTAACCTGCGCCAGTATTTCGTCAGTCACCAGATGGAAGCCTCTGGCTTTCGGCTTCAGGCGGATTTCATATTGTATCCACATCGCCGCCCCCTGCTATCAGGCTTCGCGTGCCAGAATCGG # Questionable array : NO Score: 5.81 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //