Array 1 970342-972566 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048649.1 Aminipila butyrica strain DSM 103574 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 970342 29 96.6 32 ............................C GGCGGAGACTAATCTTATCAGTGATGGACAAG 970403 29 100.0 32 ............................. CTGAATAAAAGAATTTCATCTGCATTGTTTGT 970464 29 100.0 32 ............................. TAGAGGTCATGTTTGATGTTGATGGGAGTGAA 970525 29 100.0 32 ............................. GCGAGGGTCTATGGCGATGCGGAGGTCTATGG 970586 29 96.6 32 ............................G ACAACCGCATAACTCTTATCAACCTAAGAAAT 970647 29 100.0 32 ............................. GAACGTGACCCGTATGGTCTGATTCTTTTGCA 970708 29 96.6 32 ............................C AACAGCTCATTGATGCCAGAAAAGAGCAAGAA 970769 29 96.6 32 ............................C AGGTTGCTGACACAAATAATAAGTTCATAGAT 970830 29 100.0 32 ............................. GCTATCTCCTTTTTCACAGTTTGCTAAAGCCT 970891 29 100.0 32 ............................. AACAATTGCCATATCTTCGTGGGTATCGATCA 970952 29 96.6 32 ............................C GGGGGCACAATTTGCGCTTCCATATGGATTTA 971013 29 100.0 32 ............................. TACCTTGATGGGAGATTTCGTCTTTGCTGGCT 971074 29 96.6 32 ....................A........ GCACCGTATCGGTATAAGATATTGTTAAGGAG 971135 29 96.6 32 ............................C AGTTCCCCAGCTTCTTTGTAGAAGTCCGCATT 971196 29 100.0 32 ............................. GTGTTAGTAGTAAGAGCGGTAGGCAACACCAA 971257 29 100.0 32 ............................. ATCTTTAGAGACAAAACGATGCATATCTGTAG 971318 29 100.0 32 ............................. ATAAATCAACCTCACTTAACACCGTTTCCGAA 971379 29 96.6 32 ............................C TATCAGTTTTCCAATTACCAACTATGTAGCTT 971440 29 100.0 32 ............................. ACAAAACTCCCCAAACTGAAAATCCCGTATTA 971501 29 96.6 32 ............................C CCCGCTGGCTCGAACTTTAGGGCTTTTGTAAA 971562 29 96.6 32 ........................A.... CCAGGAACGCTTTTACCTCCTTTGAAAGCGCA 971623 29 89.7 32 ...T........T...........A.... TTAGGGAGCACAAAATATAACAACTTGGCAGT 971684 29 86.2 32 ...T........T...........A...C CATGAAAAAGATTGACGGGGCTGCTAATACCG 971745 29 89.7 32 ...T........T...........A.... GCTGCAATTACTACTAAAACTAAAATGCCTAG 971806 29 89.7 32 ...T....................A...C GATGTGATGATGGATTCTTTCATGCTCATACT 971867 29 93.1 32 A...........T................ ACCCCAACCATCGCAACCAGCTTTTCCGGCTC 971928 29 89.7 32 ...T........T...........A.... ATCAATCAAAAGTGGTACAGCCTATGCACGGC 971989 29 93.1 32 .......T....................C AACGCGATAGACCGCATTGCGTCTGAGATTGC 972050 29 89.7 32 ..AT.......A................. ATTCCAGGCCAGCTCAGAATGGACGGCACGGC 972111 29 89.7 32 ..AT........T................ TCCGCGTACTTGAGTTGGACAGCAGTCGACCT 972172 29 89.7 32 ............T...........A...C CGAACCAAGCCAGAGCCAGAGACACTCTTTGA 972233 29 86.2 32 ...T........T...........A...C ATGGGGAAAAACGATAAAATAGTAAAGCTAGG 972294 29 93.1 31 ...T........T................ ACTACGACTTGATCATGGGAGAAAACGGAGT A [972318] 972355 29 86.2 32 ..AT........T...............C CAATCAAACAAAAAATCACTCCCTCTCTTTTA 972416 29 93.1 32 ..AT......................... GGAATCAATGTGGGGTAAGCTCTATTAAGGAG 972477 29 93.1 32 ...T.........G............... TTGAAAAAAGAGGCAGCTAAACGCCCCAAGAA 972538 29 79.3 0 ...........ATG........GA...T. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 94.5 32 GTGGTCCCCGCGCAGGCGGGGGTGTTCCT # Left flank : ATCCAGAGAAAGATCAGATTATTGAGATTGCTGCCATAAAAATGGAAGGCAGTGAGATGATTGTTTTCCAAAAGTTAATAAAGATTGAAAACGGACTTCAAAAAGAAATAGCTGAACTAACAGGAATTACAGATGGAATGCTTGCCAATGATGGGAAGGATATTGCTGTCGTTTTGGACGAATTTCTTGACTTTGTGGGAAATGCAATTCTAGTAGGGTACAATGTGAAATTTGATATCAGTTTTCTGAATGCTGAACTAAAAAAGAGTGGACATGCGGCATTAATGAATAAAAGCATATGTCTTTTACAAGAAGCAAAAAGGAAACAGAAACTGCTACGAGATTATAAGTTGAGTACGGTTTTAAAGAAATATGATATAAGTACAGAAGGTTTACATCGGGCTTATGTAGATGCCAAGGCGGAGTATGAATTAGCGATGAAACTAAATATTTTTTAATAATGTAGGATTGAGAAATGGCTGGAATTCAAGGATTTTTAA # Right flank : TTTTATGACACTAATGGAAAGATAATCTTATAAAAAGGGAATCTGTAATGGTTGCCCCCAAACATCCTAAAAAATTTATATGCTACTATTAACATGAGGAAGGTAAAAAGCTCTCCACCCCCCTAACATGAGATGACAATTTCGACATATTTTGGAGATATTGAAAAAATATCCTGGAAGATTTCGTTAATATATGTTATATTTCATATATTAGATGTATTTTTAGTTGATTATTGTTATCTATAACGGGAGGATGTAATAGATGTATTGTAAAAATTGTGCAAAAGAAATTGATGACAGAGCAGCCATTTGCCCACATTGTGGTGTTTCTCAGGCAGCTGCGCCACAAGTGATTGATAATGGCGGCTTTGGTTGGGGGCTTTTAGGCTGCTGTATTCCAGTCGCCGGGTTAATCCTGTTTTTGGTTTGGAAAGATACGAAGCCGAGAACTTCAAAAGCTGCGGGTATTGGTGCCTTAGTTGGCATTGGTTCTACTGCGC # Questionable array : NO Score: 5.37 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGGTGTTCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-36] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1455083-1456453 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP048649.1 Aminipila butyrica strain DSM 103574 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1455083 29 96.6 32 ............................C CTCACCTTTTGGAAAAAGGACAGCCCCCAAAG 1455144 29 100.0 32 ............................. CAGCATAACAAGGAAAATAACCCGGCTCACCT 1455205 29 100.0 32 ............................. AGGGTCTGTTGTTTGTGGGTTTACAACATTGA 1455266 29 100.0 32 ............................. CATAAACTCAAACGTTGTGACAATCAAAACTG 1455327 29 96.6 32 ............................C AACAAGGTTACTACAATCAAGCTTGTCAGGGA 1455388 29 96.6 32 ............................C GGTGTGCCAATGACTAACGACGATATCACTTC 1455449 29 96.6 32 ............................C TCAATACCCAGCAGACTGCGGTTGTACTTATG 1455510 29 100.0 32 ............................. GCTTGGCTGGCGGGTTTTGGGTGGGGGTGGGC 1455571 29 100.0 32 ............................. ATGACCAGTTCATCTAATAAAATCCCATCAAA 1455632 29 96.6 32 ............................C TTGTTGTATAAGACGCAAGATGTGGCTGAATG 1455693 29 96.6 32 ............................C ATCGCCCGCCCTATCATTCCAAGACCGTTCAT 1455754 29 100.0 32 ............................. TCCACAGACCCCGCAGTCTCAGGGAATTACAA 1455815 29 96.6 32 ............................C TCAGTAAGCTTTTGAGTGTCGATAATATCCCG 1455876 29 96.6 32 ............................C GTGAAGTGAGACAGGCAGACCAAAGAAAGAAA 1455937 29 100.0 32 ............................. CAGCTCCTTGCTATGATGTCTGCATATTATTC 1455998 29 100.0 32 ............................. ATCATCATTTACGGCTATATCTCTTAACTGTG 1456059 29 100.0 32 ............................. AAAGAAGTAGTCTTGTCCTTCCACGAAGATGC 1456120 29 100.0 32 ............................. GCCAATGTGGACAAAGCATTCGAGAAAATCAT 1456181 29 100.0 32 ............................. GTTGGGGTTTCTACAAACAAGTTGCTCGCTAA 1456242 29 100.0 32 ............................. TGGTTTCCTTGTTCTCGTTTAGCTGCATTTCT 1456303 29 100.0 32 ............................. ACAATTGCCGCCCATGGGGACTCTGCCCCTGT 1456364 29 86.2 32 ............T.T...........T.G CCCTTTACCCCACCGGCCGTTCCAAATGCTAT 1456425 29 75.9 0 A...........GAT...A....A....C | ========== ====== ====== ====== ============================= ================================ ================== 23 29 97.2 32 GTGTTCCCCGCAAGCGCGGGGGTGATCCT # Left flank : CAGGTTCGACTCCTGCCGGGTGTACCAATAGTTAAAGACAAGTTTTCAATAAGGAAACTTGTCTTTTTTGTGATTATAAACCTTTTCAAAAGTATCTTTCTCTTTGCAATTTTATAAATGCAAGCGCAAGATCAACATTGCAAATTATAGGTAAATATGGATTTTTCAGTTGATTTGAGACAAAACATTTTATATAATGCCAATATATAGCAAATTATTCATGAAGTGGTGAAACTTTTTCTAATAGACAGTTTGACACGTTGGTCATGCCGAAGAAATTTATTCTGAATATCTCGAACTTGATGAAGGTGAATTTCATTGCAGTATTGATGATGCGCAGTAACGATGCAGGTATTTGAGAAAGTAAAAGAATTTAAGAAGAAAATGGTACTTAAATTGCAAGCTTTGCCAAGGCAATTGATTCGATAGAACTTTTAAAAAAGTAAATGTATTTTATTGAATTTGAAAATAAAAGCCAGGAATTATGGGGTTTTTTAAGT # Right flank : CCAAAAGTGCTGCTCGGAGGCATGCAAAGCCACGTGTTCCCACAAACACGGGAAGAGTCTTGTGAAGTTGCGATATTTAGGTAAGATTTATCAAGCCTACTACACTGTTCCTGCGGCTTTACAGATTGTGAATTGCTCTGCCAGCGGAAGCATCTCTGGTGATCAAGTCAGGTGGGTGCAACCGATGCAGAAGCAACCGTATCCTTGGAACATGTGGATGATTCCATTCAGTCATCGGCGGTAGATGAGGCGGCTTAAACATCTTTAGAAAGTTACTGAAAGCTTTATGTGGCTTCATCAACGCTCTGTCCTTCAGGATATCCTGGGACGGAGCGTTTTTAAGCTCCTGTTGAAGGTAAAAAAGTAAACGTTTTTCAGTACCTTCGATTTATGATATACTATATTCAGAATTGTCAATAAGATATAAATGGCAGACGGTGAATAGCTGAAAAAAGGTATGTGATATTTGTCTAATCGGGGGTTGTTATGGATATGAATTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.94, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //