Array 1 40079-41170 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWL01000003.1 Thermosinus carboxydivorans Nor1 ctg54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 40079 37 100.0 38 ..................................... GCTTTTATTGTCCCTTTCCGGCCAAGTACGATCTGGAC 40154 37 100.0 39 ..................................... GTAGCAATGCCTGGATTAAAAGTAGCTTGTAATGTAAAT 40230 37 100.0 39 ..................................... GTAATTGATCGCTTGTTGGGAAAGGTAAATGATGCCGTT 40306 37 100.0 41 ..................................... CGGCTTTATTACGGCAATATTTTGTTCCCAGTCGTTTATGA 40384 37 100.0 39 ..................................... CTCAGAGATTGAACCCCCTATCCCCATCTGCCATCCTCG 40460 37 100.0 38 ..................................... ATATATGAGTCAGGCCATTAAACTTGTATCGGATATAA 40535 37 100.0 37 ..................................... CAACGCACTTTTTGAGCCGGTCAAACGTTATGTCTTT 40609 37 100.0 35 ..................................... ATTGTTTTTGATGATTTGGTTAAAGCGTGTGAGGG 40681 37 100.0 38 ..................................... GTAGTTGACGTTTCTACTTCTTCAGGTTATCTATCAGT 40756 37 100.0 41 ..................................... GTGAGGCTGTCCGCAATCTTTTGAAGCGGCGTTTCCCAGAC 40834 37 100.0 39 ..................................... GTCCGACGCGCCTTCGGCGCAATTAGTTTTTTTCATGGT 40910 37 100.0 39 ..................................... TATCAAAACCTACACTAACGAAGGTGAACTAGTTTTAGA 40986 37 100.0 35 ..................................... TTGGTTAAATGGTGATTTAGTAAATGGTAAACGTA 41058 37 97.3 38 ....................C................ TCAGGCAGCTACGTTGCCCCCTCCGGCAGCCGCGGACC 41133 37 78.4 0 .........G..........C........C.A.GCCC | C [41161] ========== ====== ====== ====== ===================================== ========================================= ================== 15 37 98.4 38 GTTGCACCCACATTCCCCGCTTAATGGGGACTGAAAG # Left flank : ACTGGATGGGCGGTTTCTCGGGCTTAGTCAATATCTGAGCGCCGATGCGCTAATTTTGTCCGAACCGATGATTATCGACCTCAAGTTTGGTACGCCACAAAAATATCACCGCCTATCCACTACTGGCTATGCCTTAGCGATGGAAGCACTGTATGAGGTTCCGGTTAATTTGGGCTGTATTGTATACGGCGAGTTCCGCAACGGTCGCCTCATCGTAACCAAGGATATGCATTTGATCGACGATGAATTGCGGCAATGGTTTATTGAGTCTCGCGATAATAAAATGAGGATGATCTGTGAGGAAATTGATCCTGGTATTGCGGAGGGTTGTTATGAATATTGTCCCGGGTACGAATTTTGTCATCAGTAAAGTGACTTTCGCAAATACCGGTGGTTTTCGTGCAGAAAATGCTTTTGCGGGTTTTTGGAGTAGTGAAGTAAATCATGTAATGCTTGCTAACCCAGAAAATACGCGGGTTTTAGGACCGTCAACGTAGTCG # Right flank : CTAGATACTGAAGACATAAAAATAGCGCCAGCCGGCCGCCAGGGCCATCAGGCGCTTGTAAATATATGGGTTTATCGCGGATCATGCAATTGCCCTCCTTGGCTAAAATTGGGCATGAAAAAACCGCCCTTAAAGGCGGTAATGATAATTATTCTTTAAATTCCCAGACAACTTCTTTAACTTCATTTGGTTCAATCCACTCAACTTCAATGTTCGGATCAAGTGGATCAAATTCAATAACAAATGCCTTATTGCCATTTCTTTCAGAAATATCAATGATCGTGCCTTCGCGCCCGTCTTTAAGGCGTACTACATCAAACATTTTTGGAACTTTATTTGTCGACATAGGCTGTCACCATCCTTATTTCACCACTGGCTGTCTGTTCCCAGACTGTCAAGATTGTAGATGTGGCGCCATTTACACCTTGCACTTTCATTGATACCACGTATTTGGGGTTATTACTAACCGGCGTTTGTCCTGCATATACTGCTGGAAACTT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCACATTCCCCGCTTAATGGGGACTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 198420-200423 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWL01000001.1 Thermosinus carboxydivorans Nor1 ctg55, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ============================================== ================== 198420 35 100.0 39 ................................... GCAATTAAGGGGCAAAAAGGCTACCCACCATTATTTCTG 198494 35 100.0 43 ................................... TTGAGCGTATTACGGCGCAAACATCGGCGAGCTGGTGGATTGA 198572 35 100.0 38 ................................... TTACTACGGGTTATGCACAGTTAAAAGATGGAAGGCGT 198645 35 100.0 38 ................................... CAATTGGAGGGCAGGCTGTCAACCTAATGCCTGGGGAC 198718 35 100.0 40 ................................... CTTTGCCATCTTGTGGAACGGTAGAGACGACGCCCTCTAC 198793 35 100.0 41 ................................... GTTGAGTACGAGTGTCCAATATGTGATGGCAGGTTTTTTGC 198869 35 100.0 39 ................................... TGAGTCAATTTCCCGATTGCGTTGAAGCCGCCGAATAGG 198943 35 100.0 43 ................................... TTGAACTGTAAAAACTTCCCGACCGTGAAAGATTTACAAGATG 199021 35 100.0 46 ................................... GTCACTTCTTATCCCCATACGATGGGGAAGAGACAGAAATTGAAAC 199102 35 100.0 35 ................................... AAGCCAAGGCTTGGCGTGGTGAACATCATTTTAAG 199172 35 100.0 43 ................................... AATAGATAGCTCACATTTCGTGAGGGAGGTGATCTTTGATGCA 199250 35 100.0 41 ................................... CCGACGAAGAGCTAGCATTTTCAGAAAGAGAGGATGCATAC 199326 35 100.0 43 ................................... TATACCGGAACTAAGCAGTACGGCGATGCGTCGGTGACATATG 199404 35 100.0 45 ................................... TAATAATGCCTTCATCCGTCCCAAAACGGATGAAGAAGTTCGCAA 199484 35 100.0 42 ................................... ATCATAATTCATTGTCGACGCAGAAACAATATAAGCGCTAAA 199561 35 100.0 44 ................................... GAGGGATATATCGCCAGGGCGGTTAGCATTGATGAAATCGCTAA 199640 35 100.0 37 ................................... CACCGGCGGGCGAAATTGCCGGCGTTCCGATAATCAA 199712 35 100.0 40 ................................... CCGATATACTGCACAGGTGATTAATTGCGGCACATATTAG 199787 35 100.0 37 ................................... GAAGAACGGTTTTCCCACGAAGCCAATTCCGTAGTCA 199859 35 100.0 39 ................................... TCGCTCCAGGAAGTCCTAACCGTCCCAGAGGCCTCGCGC 199933 35 100.0 38 ................................... ATAAGTGAAGGGAGGGACGGAAGGACAAGCTAATCCGC 200006 35 100.0 38 ................................... GCGGTTGTAAAGCATTTATAAGCATTTTTCTCCCACTA 200079 35 100.0 38 ................................... GATGACGATTTCGCTTTCCCAAGCGGCAAAAATGCTTG 200152 35 100.0 43 ................................... AAGAATACAAGATAGAGAATAAAAAGCGAACTAATTTTAGCCG 200230 35 100.0 46 ................................... AATATCACAACCGGCCTGTACTAGTGGTTCAAAGTATTTATTTATG 200311 35 100.0 43 ................................... TCCGACAGAACTTACAATATAAGCGTTGGCGTTAGCGGCGCGG 200389 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ============================================== ================== 27 35 100.0 41 GTTTCCGTCCCCTTACGGGGTGAGGGTTGTACAAC # Left flank : TTTCCATGGCAATGCGCAGACCCTCAAGGTCGCTGAACAGATTTTGCGTCATGGTTTACGCCTCCTTTTGGCAAGTTTAATATGTCTTAATAGCTAAACACGAATTTGTACAGCGAATAAGGCTTGGCTGCTCTTTCATAGTATTCAAAAATATTCTGCCAAATTCCTGCCGCTTTTTACCTGAACAATGAAATTTTGTTATACGCGGCGGTATAGTGCCAGATAAGTAGCGCCATTGCCAACCAGATCAACCTCCTGGCCTCAGCTGACCGATTTTATGTCAAGTGGCTTGGGCAGCGGTACGCGTTAGACATAGTGTTTTTGCGATGTGGTTTTGGTCACGGCAAGGCAGATTTCACTATTGTTTTTCAATACGAATCAATCTTTTGCCAAATTTAGCCTATTTCATAGGCTTATTGGGGTATGTCTTTTTTTTTTGCCTTTTTCGGGACGGCGTTTTCACAATAACCGTCCCCACGGCAACCTATAAACCTATAAAG # Right flank : CCCTGCGGCTGGGAAGCCGCATAATTACTGGGCTGAAAATGCAGTTTGCGGGAACCTCGCCACTGTTTGGCTTGCTTTAGCCGTATGAGTCATGAAAAATGCCCTCTAAGCCTTGAGAAATCTACAGCGGGAGGTTTTTGCATTTTTTGCTAGCCACCTATTATTTATGCTAAATGATTTCAAGGATCTTTGTCAATGCCATTATTGCTAGCGAACGCTAGGTATCATCTGATATAAATCGGCTGGTAAATGTCCGGGTCTTCGTTTTCGATCGCCTGGCTGAGCAATTTGGCTTGGCGGGCAAGCAATTGGCGGAATGTCAGTTCTTTGCCGCCATATTTGTTTAGGCGCGTCATGCGCTTTTCATAGGCGGCGATAAATTCGGCCGATGCTTCACGATTTAGGTATACACCGCCGTTTTTATCAGGAGGCAGAAAGTCAAGCGGCTGGATTTCCCGGCGGTGGATAAGCGACATAACTAGTGAATCGATTATCGAAGG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTTACGGGGTGAGGGTTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.80,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 214287-211443 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAWL01000001.1 Thermosinus carboxydivorans Nor1 ctg55, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =========================================================== ================== 214286 23 100.0 56 ....................... AATTCGCGCCGAATCCATTGTCTTGCCCTTTCTTCGTTTTTATAGTTTAAAAACAA 214207 23 100.0 54 ....................... GCAAGAGAATGTGAATGATTACTTCGCAGAAATTGCACGCGTGTTTAAAAACAA 214130 23 100.0 56 ....................... AGTAGGAGATAATTCTGCATCTTTGCTAATTTCTTCGCAAAGAAGTTTAAAAACAA 214051 23 100.0 55 ....................... TATTCTGGCGCCTTCCAGTCGCCCCATTCACTAGCAACTATGAGTTTAAAAACAA 213973 23 100.0 56 ....................... GTCGCCCCATTCACTAGCAACTATGACCAGGTTCGCCGGCAAGCGTTTAAAAACAA 213894 23 100.0 56 ....................... TCGTAAATAATACGAGCTGCTTTTTTGGTTTTGCGAGTCGCAGCGTTTAAAAACAA 213815 23 100.0 57 ....................... CTAAGTCTACGTCAAGTATATCAGTGTAAGCGTTGGTGATAAGCGGTTTAAAAACAA 213735 23 100.0 55 ....................... CGTGGTAATCCACACAGTACAAGGAGCAGGGATTTGCGTTTTAGTTTAAAAACAA 213657 23 100.0 54 ....................... CTGGTTCTCAGGCAGAACCTTATGGTATAAGCCCCTGACAAAGTTTAAAAACAA 213580 23 100.0 53 ....................... ATTGTTTTGGGCGGTTAACTGGTATCACTTCGGGCACAGACGTTTAAAAACAA 213504 23 100.0 59 ....................... TTTCGGCAGGAAGGTAATATAGGAGAACAATGTCCCCGTTAAACCAGGTTTAAAAACAA 213422 23 100.0 51 ....................... CTTACCCATCTGCCACATTCGTTCAGCCAAATCATAGTGGTTTAAAAACAA 213348 23 100.0 54 ....................... AAACTGGTGCCAATTAGCCAATCCATTTTTTACCTCTTACCCGTTTAAAAACAA 213271 23 100.0 57 ....................... CGCCTTCATCCAGGTGTTTTAACATTACCCAGCCATGGACATGTAGTTTAAAAACAA 213191 23 100.0 58 ....................... TTAAATTCACTTAATTTCATGTTTATTCTCCTCCCGTTTTACTATTGTTTAAAAACAA 213110 23 100.0 55 ....................... TACACTTTTCCCAGTCTCCTATATACCAACACGAAATAGAGAAGTTTAAAAACAA 213032 23 100.0 53 ....................... ATGTAATGATTGTATAGCCAATATAGTCATCGGCATTTTCAGTTTAAAAACAA 212956 23 100.0 55 ....................... TTTCTGGCCCTATTTAGAGTCTTTGCTATTTCAGCGAAGAAAAGTTTAAAAACAA 212878 23 100.0 56 ....................... TTACTTGAGCAACTTGGCCGGTTATTACCCGAAATTAGCGAGGAGTTTAAAAACAA 212799 23 100.0 52 ....................... TCAAAAATATAGGCTATGCGCTCTTTTGCGGCTTCAAGAAGTTTAAAAACAA 212724 23 100.0 55 ....................... CATTTGGGTCAAAATTGTAATTGGCTGGGCCATGTTCGATTAAGTTTAAAAACAA 212646 23 100.0 56 ....................... CGCTGTCGAAGACGGAAAACGAGAATTTTAGAGACGAGTCGTACGTTTAAAAACAA 212567 23 100.0 56 ....................... ACAACGTAGTCAATGTAATTGATGATACTGTCTGGTATGTCTCCGTTTAAAAACAA 212488 23 100.0 59 ....................... CATTCTTAATCCTACCTATTTTTTTGTTACCGTCACTGATATGTACTGTTTAAAAACAA 212406 23 100.0 55 ....................... GAAAAATCTAGGGCAAAGTTTTTAGTGAAGGCCAGGAATTTTGGTTTAAAAACAA 212328 23 100.0 58 ....................... TGCTAGTTATGACGAATGGCATATTGGCGACTATCCCCCTGTCACGGTTTAAAAACAA 212247 23 100.0 56 ....................... ATTCCTCACTTTCTTCGGCCGGAAGGTAATACAGTAATACAATAGTTTAAAAACAA 212168 23 100.0 58 ....................... TCGCGGCTAACGACCTCCTTCCAGTCTTGCGTCCTGGTCGGTTCAAGTTTAAAAACAA 212087 23 100.0 54 ....................... TTTATTCTGGCCGCACATCTTCGCACTCGAAGATGTGCAAAGGTTTAAAAACAA 212010 23 100.0 58 ....................... ATTGAATTGAAGCGATTTACGATAGTACCGTAAGGTACTATATTAGGTTTAAAAACAA 211929 23 100.0 56 ....................... TATTGTATGGTGCACCGTCGCTTTTGTTTAGACGACTATGCCATGTTTAAAAACAA 211850 23 100.0 53 ....................... GGAATTGACTACCTTCCAGTTGTCATCCCATGCCTGCCGCGGTTTAAAAACAA 211774 23 100.0 56 ....................... CAAAAACTGGAAAATGGCATTATTCCATGGCGCAAGCCATGGGGGTTTAAAAACAA 211695 23 100.0 50 ....................... CTTTAAGCCCTTCGTAATATTTGCGCGCCTCTTCCAGCGTTTAAAAACAA 211622 23 100.0 53 ....................... CTGGCAGTTCAACCAAGGCTTTAAACGACTTTTCATGTATCGTTTAAAAACAA 211546 23 100.0 58 ....................... CGGGCAGGTTCAGACAGTTTTGTGATTCGCAGTGTTCGTTTGGCGTGTTTAAAAACAA 211465 23 95.7 0 ..C.................... | ========== ====== ====== ====== ======================= =========================================================== ================== 37 23 99.9 55 AATCCCCGTAAGGGGACGGAAAC # Left flank : TTGGACGACGAAAGCTTGCCGGCCGCTATGGCCTTACCACAGAAATATTTTGTGCTAGTCATCTATGATATTGTCTGCAATAAGCGCCGCCGGCGCATGGTAAAACTGCTGGAAGCCTTTGGTTTTCGCGTGCAAAAATCGGCTTTTGAATGCCAACTTGAACGGCGCCGGTATGATCGGCTGGTAAAAATCGCGCCAAGACTAATCGACAAAACCGAAGACTCTCTGCGTATTTATCTTTTAAGCGGCAAAATGTCGGTACTGTCATGGGGACGCGAAGAATTTGTTGACGACAACGGCACAATAATAATATGATAATAATGATGAAAAATATAATAAGGAAGGAAGTTGGAATTGCCCCCGCTATAGGAAAATCAAGGCTTCCTCGGCATTTTGGCAATTTTTGGCGCCGCTTGTGCGCCAAAACTAGCGTCAGCCCCGCAAACCGCCGATTCAGCCCAATAACCGTGCGACCTAGCGGGCACAGGGTTTAAAAACAA # Right flank : CTCAGCGAAAAAGGAAGAAGCAGGCACCACGTGCCTGCTTCTTCCTTTTTCGTCGAACCCGCGTCATTGCCAGCAGTTTTCCCAGCAAAGTTTAAATAGCGCTAACCTGAAAATTTTTGCAAATTTAACCACCGCATTGACAAGTTTCGACAACTCTCATGCCCTGTTTTTGTTAAAATAAAAACAAAATTCTACTGCGGCCACCAGCTGCAGGCTTACAGGAGGACTAGCCGATGGAGCGATGGATCCGCATAATATCGCTGGCAGGGCTGCTGCACGATGTCGGCAAAATTTGCTACCGCGCCGGGTGGGGCGAAGGAAGCCACAGCCAACGCGGTCGTACTTTTTTAGCCGACTGCTTGGGCGAATTCGCCGCTAGCGACGACGGGCGGCTGCTGCTCGAGTGCGTCGCCAACCATCATGCTGCTGACGTACGCGGCCTTACTGACACCAAGCATCTCGCCTGGCTTGTTTATGAAGCCGACAATATCGCCGCCGGC # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.76, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGTAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched AATCCCCGAAAGGGGACGGAAAC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //