Array 1 80186-82347 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJOQ01000002.1 Streptococcus intermedius strain BCC34 D8825_contig002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 80186 32 100.0 36 ................................ TCGCTGACTCTAACCTTTTGTCCATTGACATAAAGG 80254 32 100.0 34 ................................ TGGCCGTCCAATCTCTGGGGTTACTACTTTCCTT 80320 32 100.0 35 ................................ AGACGAAATCACTGGCGCAAAGATAGATAGACCAG 80387 32 100.0 35 ................................ ATGTAGGATTCGTCAATACGCTTTGTTACAAGCTC 80454 32 100.0 34 ................................ TCATTCTGTGTTTATATTATACACCTTTTCTCTA 80520 32 100.0 35 ................................ AAGAAAGTAATCAAGCGTTCGACTGAAATAGGGAT 80587 32 100.0 35 ................................ TGAACAGGATTTTGATGATATTAAGTGGATTTTGC 80654 32 100.0 35 ................................ AACTTTCTACTATTAAAATACATTTAAACTAAAAT 80721 32 100.0 35 ................................ ACAGCTTTGGTTTCGAAATACTGATGATTATATTG 80788 32 100.0 33 ................................ ATAACGGTAATAAATTTGACAATCATTTTTTAA 80853 32 100.0 34 ................................ TTTATCTTTGTCATCCTTTACAGTATCGTATCCT 80919 32 100.0 35 ................................ TGATTCTTTTTGTAATGATGATATCCAAAAGTCTT 80986 32 100.0 34 ................................ ACATCAATATTATAGTCAAAAAACGTCAAAAAAA 81052 32 100.0 34 ................................ ATCAAAAATAGTTCCTGTATAACTATTTGCTTCA 81118 32 100.0 34 ................................ AATGGTTAAGTCTGATTTTTCAGACATTAAACTT 81184 32 100.0 34 ................................ ATTTAATTTTGGAAATAGATAATGATTAACAAAT 81250 32 96.9 34 ..............A................. AATGTCAGATGTAATAACATCTGTTATATCAAAT 81316 32 100.0 33 ................................ TTGGAGTTTTGGGGCTAACTGGAATAATCAAGG 81381 32 100.0 35 ................................ ACAATACTCTGAAGAATATGTTATTCTTGATTCAG 81448 32 100.0 34 ................................ TCAACAAAACGCTTAGGGATTAATAAACATTTAC 81514 32 100.0 34 ................................ TTTTAATTGTAATTACTGTCTTTGCAGCATTGGC 81580 32 100.0 35 ................................ AAAATTGCGGAAGCCATGAGACATCAAAGAACGAA 81647 32 100.0 33 ................................ TTTTTTGCCAAAATACATAAGGGATGAGCCGCC 81712 32 100.0 36 ................................ TAGTAGCTTCAAGATAGCCAAGTGAAGCAATAACAC 81780 32 100.0 35 ................................ TTCTATTAAATACATTTCATTTTTTTGGTTATAGT 81847 32 100.0 37 ................................ ACTACTACTCTATGAAAGCACTTTCGCCATTTTACAA 81916 32 100.0 37 ................................ GTAAGTCAAGCCAGATTGCCAATGAATTGTTGCAAAA 81985 32 100.0 34 ................................ AGGAGGCTATTAGTGGAGCAAGCAAAGACCGTCC 82051 32 100.0 34 ................................ AAAAAGGCGCTTGTACAACAATTATGCCTAAGCT 82117 32 100.0 35 ................................ AAAGAAATCCTGCCCTGTTTCAATGTGGCTAAAGA 82184 32 100.0 34 ................................ ACCACTCGTCACATACCCATCTGAAAGATATTGT 82250 32 100.0 34 ................................ TGATTCGTAAGAGAAAGAGATTCCTAAGTTATCA 82316 32 93.8 0 ................A.A............. | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.7 35 GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCCATTCGTGGTGAACTGGAATCCTATCCGCCGTTTTTAATCTAGGAGTAAATTTATGATGGTTTTAATAACTTATGATGTTAATACGGAGACTGCTGCAGGTAGGAAACGTCTTCGATATGTTGCAAAACTCTGTGTTGATTACGGTCAGCGCGTACAAAATTCCGTTTTTGAATGTTCGGTAACTCCAGCGGAGTTTGTAGAAATAAAAAATAAATTGTTGACAATCATTGACCAAGAATCTGATAGCGTCCGATTTTATTTACTTGGCAAAAATTGGCAAAATCGCGTGGAAACCCTTGGTCAAGATGATAGTTATGACCCTGATGTGGGGGTATTACTTTTATAAAAACTTGTGTGCGAATCTAGGTTGCACATCAAAACCTAGAGCATTCGCGTTTTAAAACAGAAGATAATGACAAAAATCTAGTTTTTATTAAATGAAATAGCTCAATAAATTCTTAGATTTAGTCACAAACGGTGCAACCATGCGCT # Right flank : TTTTGATGAGTTTGTCTTTAAAAGTTTGAACGAGAAACTGTACCAAAAGTTAGGTTTGGATAAATAGCGAAGCAAACTAACATCTGAGGTCAGAGAGGTTCTAAACATACATATCTTAGGTAGAGTACTTGAAGTAATAAAATTCCCGATATTTCCAACAAAAAAACAGCTCAATAATAGAGTTGTTTTTTTTAAATTGTTAGCAAATCTAAATTTGGGGTTTGTGTTGTGTATATATCTCGATTTTTAAACTTCAAAATTATAGAGAGTGGTTGATAAGTAGCGCTCACCATTATCTGGGGCAAGAGCTAGAATTTTTTTACCTGTTCCTAATTTTTGGGCCACTTCAAGTGCAGCATAAATAGCTGCAGCAGAAGAAATACCTACCAGAAAACCTTCTTGTCCACCGATACGACGCCCAAGTTCAAGTGCTTGATCAAAAGTAACGCGGACAATGCCATCGTAAGCTTGAGTGTCTAGTGTTTCTGGGATAAAACCAG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //