Array 1 160079-160470 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZD010000004.1 Serratia marcescens strain S1SWMC NODE_4_length_274171_cov_29.73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 160079 28 100.0 32 ............................ GATTGCCAAAACACGACCTGTTCTTGACCATC 160139 28 100.0 32 ............................ ATCTTCGGCTAACGCCTGTAGTTTTTTCATTT 160199 28 100.0 32 ............................ AATAACACGGGTAAGAGACGAACAGATTTTAA 160259 28 100.0 33 ............................ CTGAGCTGCTGTTTGACCTGCTTGACGGGTTGG 160320 28 100.0 32 ............................ TCATTGATCAGCGTAGTAACTGTGGACGTGAT 160380 28 100.0 32 ............................ TGACCTGATCGCCGCATGGGCATGCTCTGCAT 160440 28 96.4 0 ....................A....... | A,A,G [160460,160463,160466] ========== ====== ====== ====== ============================ ================================= ================== 7 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATCCGGCCTACTACGGCCGCTTCGGCTTTAAACCGGCCGCCACCTATGGCCTGAACTGCCGCTGGCCGGACACGGAAAGCGCGTTCCAGGTGTATCCGCTGGCGGAAGACGCCCTGAATGGCGTCAGCGGCGAAGTGGCTTTTTCGGCGCCGTTTAATCGCTTTTAACGACCGGCAATAGATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGTATTTTGCTCAGCTGTTTGAGTGAACAATTCAGTTCATCTGTCGTGTCTATGCGTCGCAATGAGACGGATGGTGATACCAAACAGGGAACCTATAATTCCCCCCTAAAATGTAGAAATGTCACCTTATTCTATTCTTGGTTGCCGAACCCTTTTTTGAATGCCATTCTTAATTGATTGATTTAAAATAATATTTTTAAACACTTTAAAAAAGGCTTTTTGGACGGGTATTTCGATTTTCCTCCATCAATCAGCTGATTAGCGCTAGTATTCAACG # Right flank : AAAGTAATATGTATTTGGCTCATTCCGGCAGTGATCAATAAGTGGATGATTTTATTTGTCCGATTGATGGATATTGACTCGGTTGCAACGGATTTCCCTGAAAAAACGTGGTAGAACGTTGGTGTCGCCTGCATTTATATGCATTGCTTGTTATTTATTTTAATTGTAATTATTTCATTATGGATAAGAAATATAACAATGAAAAATGCCCTCTCTTCCTCTGAATTAAAAACAATACTGCACTCGAAACGAGCAAACTTGTATTACCTGCAATATTGCCGAGTTTTAGTGAATGGCGGCCGCGTCGAATATGTCACGGACGAAGGGAAGCAGTCCCTTTACTGGAACATCCCCATTGCCAACACAACCGCCATCATGCTGGGAACCGGAACCTCGGTCACGCAGGCTGCAATGCGTGAATTTGCTCGCGCCGGCGTTTTAGTCGGATTCTGTGGTGGTGGTGGAACACCCCTATTTGCTGCCAACGAAGTGGAAGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 168951-171438 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABBZD010000004.1 Serratia marcescens strain S1SWMC NODE_4_length_274171_cov_29.73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 168951 28 100.0 32 ............................ CAAATCTCTGAGCCTTCCTCACGAACGGTAGG 169011 28 100.0 32 ............................ TGGCGCTCAAACGTGTCGGCATAGCGGATCAC 169071 28 100.0 32 ............................ TGCGTGATAAAGTCAGCCGGAACGGCCCGACA 169131 28 100.0 32 ............................ TTTTTATTGACCTCTGTTTTATCCGCCTTCAA 169191 28 100.0 32 ............................ TGGCTCCCCGATGATTGTTCTGGTAGCTGTGC 169251 28 100.0 32 ............................ TCCGGCACTGCTGGGACTCGTATACGCGCTAT 169311 28 100.0 32 ............................ TAATGGAGGGAACCATGGCTAATTTCATGTCT 169371 28 100.0 32 ............................ TGCTGGCAGAGCTGGAGGCGAAGGATGACGCA 169431 28 100.0 32 ............................ AGTAGCCAAAGCAAGCCGAACGGCCCGTATGT 169491 28 100.0 32 ............................ ATGGCGTGAATGAAGTCAGGTTTATGCATTAG 169551 28 100.0 32 ............................ TTACTGATGCAGCGATACAAGCACTCAAAAGC 169611 28 100.0 32 ............................ CATAACCCCTCGGCTAGAGCGATACAGTCAGA 169671 28 100.0 32 ............................ GGCAGGCGCGCATACCCTCTACCGCTGCACTT 169731 28 100.0 32 ............................ AATCGTCGCCGCCGGCCTTGCTGTCGTTCTTC 169791 28 100.0 32 ............................ ACTGCCACGATGGCAGGTCGCGGAACGTCCGC 169851 28 100.0 32 ............................ CTCATTTGGTTATCGGTCGGCCAGTTGCCTTA 169911 28 100.0 32 ............................ GGTGCGATAACAGCGAGCTGTAACCGCCAAGG 169971 28 100.0 32 ............................ AAAGAGTTTAGGGGGAAATATTGAGCGAGCAA 170031 28 100.0 32 ............................ TTTCAATGAATCGGGTTACCTTCTCAAAAACC 170091 28 100.0 32 ............................ ATCAGGCGATCCAACCCGGTTTCCGTCCGTAC 170151 28 100.0 32 ............................ GGTCACACCATCAACATCAACGTGCCTTCACA 170211 28 100.0 33 ............................ AGGGGCACAACCGTGCAGGCTAACGATAAAACC 170272 28 100.0 32 ............................ ATGTGAATTTCATTGAGAGGACATGTTATGCA 170332 28 100.0 32 ............................ CAAATGTGATAGCCGTCATTCCAATAACGCAT 170392 28 100.0 32 ............................ TAATGGAGGGAACCATGGCTAATTTCATGTCT 170452 28 100.0 32 ............................ TGTATGTACCGGTATCAGCTCATAATCGCTAT 170512 28 100.0 32 ............................ AATTCCTCGGCGATGCTCTGCGTTGCCATGCG 170572 28 100.0 32 ............................ GTCAATGTTACACCGCAGTCATATATCTACCC 170632 28 100.0 32 ............................ TTGTTGAATTTGTACCGGATGCCGAACTCTTC 170692 28 100.0 32 ............................ TTGATAGGCTTCCAGTATTTGTAAATCAGCAC 170752 28 100.0 32 ............................ TCTGCCGCCAGCGTTTTAAAGTCCTTGCCGGT 170812 28 100.0 32 ............................ TCATCCACCAACTGCGCCAGGCGCGCCCAGGC 170872 28 100.0 32 ............................ TCTAGCGGCTCGCATGAGCCGTTTATGGCGTT 170932 28 100.0 32 ............................ TTGCGCCGGATGTCTTGCGTGATCAGCAGTTC 170992 28 96.4 32 .............C.............. TTCGCATGTGCCGTGCCAAGCATGGCGATGAG 171052 28 89.3 32 ..G.G........C.............. CTTTTGAATCCCTGCGGATCCCGCCGGAATTC 171112 28 96.4 32 ..G......................... GGCGGCTATTGGCTGTTCCTGGAACAAGGGGA 171172 28 100.0 32 ............................ AACGTGCGAAATGCCGCTGATCTCAAAATCCA 171232 28 100.0 32 ............................ ATCAACAGCCTGGAAGCGATTGCCGGTGCGTT 171292 28 100.0 32 ............................ TTCGCCAAATGTGGCATGTTCAGCCGTAAATC 171352 28 92.9 32 .............C.............G TTCTCGCAAGAATACGTCTTCGCCTTACTAGT 171412 27 82.1 0 ..GT.........C......-..T.... | ========== ====== ====== ====== ============================ ================================= ================== 42 28 99.0 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGCGCTGACGGCGTTGGGGGGATTCGACTGGATGAAAGGGTTACGGGACTATACCGACCTATCGCTCATCCAGGCCGTGCCTGCTGAGGCGGTATTTCGTACGGTCAGCAGAGTTCAGGTAAAGAGCAGCGTAGAGCGTATACGCCGCCGGGCCGTCAGTAAAGGTTGGCTGACTGAAGAACAGGCACGGGAAAGAATACCGATGGCGAACGAGCAGCGCACCTCATTGCCTTTTATTGCCTTGAAAAGTCTCTCCACCGGACAACATTTCCGCTTGTTCCTGAAACAGGGCCAATTACAGGAAAAACCAACGTCGGGCGTTTTTAGTTTTTATGGGCTGAGTGCGTCCGCTACGGTACCTTGGTTTTAAACCTTTTTTTTCGTTCAGAGGTAACACATTGATTTTGTTGTCTCTGAACGGTATCTGAAAAATTAGGGTTAAACCGAGGTATTTACCTGTTGTTCTTTAATAATCAGATCGTTAGTGATTTTTTTGTTCT # Right flank : ATAGGAGGGATAAAACTTTACCGACATGTGTTAACCGGGAAGCAAATACTCCAACGACAGCGGCGGGTGATTCACCAGCCGCTCTTTTTGCGTTTTGCTCAGCTGTTTGACGCGGTATTCCAGCCTCAGCGCCGTTGAGCGATCCCCCACCTGGCAGTGAAAAGCCAATGTCAGTTCCCCTTTGCCGCGCAGCGCCTTGGCGCCTTTACCGGCCTGGTGTTCTGCCATGCGGCGCGCCACGTCGGTGGTAATGCCGGTGTACAGCATGCCACTCGGCAAACGCAGCATGTAGAGGTGCCAGACTGGAGTTGTCATCATTTTTCCGAATTAGATAAGGCCAAAGTATGTCGTCAGAGCACGGCATCTTGCTTTTAATTAATTGACTTTAAAATATAAATTCATAGAAAGTAAACGTCTTGAGTCGGAAAGGTACTGGCTTTCTCATTATCAGCTTGCCCACGTTACTCGTTCAAACATCTACTGCCGTACAGGCAGCTTAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //