Array 1 19976-20484 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTR01000026.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_26.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19976 28 100.0 33 ............................ CCGCCGACTGGTTGCAAGGGTGGCTGTGCGTAT 20037 28 100.0 32 ............................ TTGAGCGCGTCGCCGGCCAGGCTGTTGGCGAT 20097 28 100.0 32 ............................ TGCTGTTGCAGGACGGTTTGACTTACCGCCGC 20157 28 100.0 32 ............................ GTCCAACCCAGTCGTCTGTGACGCACCTACGC 20217 28 100.0 32 ............................ TCTATATGGCGCTGGGTTCCGTTGCGGCCATG 20277 28 100.0 32 ............................ ATCAGCCAGAGGCTGTCCGATTTCGGGAAGGT 20337 28 100.0 32 ............................ CGGAGGTCGGACATCATCGGACGCTTGTTCGG 20397 28 100.0 32 ............................ GTGCCGAGTGCCCGCGGTCGAGGTGCCGGCCT 20457 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 32 GTTCACTGCCGAGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGAAAAAACCCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGAGGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACGTCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCCCGCCCATCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 30117-29009 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTR01000026.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_26.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 30116 28 100.0 32 ............................ ATGGCCAGGGCTTTGTCTGCGGACGGCATTCC 30056 28 100.0 32 ............................ TACTCCTGATACCGAGGTACAACCGATGAGCA 29996 28 100.0 32 ............................ TCGATCAGCTCCGCAGGAAGCCCAGGACCACG 29936 28 100.0 32 ............................ AAGCAGAACATGCCGCACGAGCTGACGGAAAG 29876 28 100.0 32 ............................ TCCATGCTTTCCATGAGATCAAGGCAGCACTG 29816 28 100.0 32 ............................ ACTAGCAAATCTTGGACGCGCTGGTTGAGGTT 29756 28 100.0 32 ............................ ACAACATCCATTCTGTTCGTGGCATGGTCGTA 29696 28 96.4 32 ......C..................... TGATGATCTTGCAGAACCGCCAGGGCCGGACC 29636 28 100.0 32 ............................ TCGCTCATGGCCTCCCATTCGTCGCGGGTGAA 29576 28 100.0 32 ............................ TACCGGAAGGCTGGGAGGAAGTGCAGCTCAAC 29516 28 100.0 32 ............................ TGAACCAGTCCGAGCTAGCTCGGCGCCTAGGG 29456 28 100.0 32 ............................ AGGTCGAAGCCAGTACCTGGCGCGACGCCGAG 29396 28 100.0 32 ............................ GGAAGATGCCGAAGACGATCAGCGCGATGATC 29336 28 100.0 32 ............................ TCCACGGTTGCGGGCTTCGCGGGCCTGGATGC 29276 28 100.0 32 ............................ ATCGAGCGCCGGGGAGCGCTGCACGTCGCGGA 29216 28 100.0 32 ............................ TGTATTGCGACATCGACGGCGAGCGTGTGACG 29156 28 100.0 32 ............................ TTGCGGAACGAGTCCCACTGCTCCTGCGCGCG 29096 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 29036 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.1 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGTCAGCAGGCCGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAGGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGCTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGCGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 193970-194486 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTR01000006.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 193970 29 100.0 32 ............................. ATCGCGGAGAGAAGGGCCTGGTCGAGACGGTA 194031 29 100.0 32 ............................. GGGAGGCCGCGTATCGGTCGTGTCGGCTCACA 194092 29 100.0 32 ............................. CCTTCGGGCAGATCATCGGCCAAATCCCAGCC 194153 29 100.0 32 ............................. CACTGCTTCGCGGTCGGCGACGGCACGCACAA 194214 29 100.0 32 ............................. TGCTCCGGCAATGTCGATCTCGACTGGCTTGA 194275 29 100.0 32 ............................. TTGGGGTTGTCCGCGCCATTGGCCAGACGTTG 194336 29 100.0 32 ............................. TAGCGCAGCCCGTCGAGGAGCTTGCGTTGCAG 194397 29 89.7 32 ............A............G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 194458 28 79.3 0 A..........A..C..-.....A....T | C [194461] ========== ====== ====== ====== ============================= ================================ ================== 9 29 96.6 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : CCGCTCGGCGCGGCTGGACATGCAGAAAGCCCTGGACCTGGCGGTGAAGAGCCGCGAGCGGGTGCGCTGAGGCGTTCCGCCGGCCCACGGCCTCACGGCGAGGCTTCCCGCGCAGTTCGCCGGACAGGGGGGCGCCGAACGCCAGTTAGCGATGCCGACCGGCAGCGGCGTGGCCATTGTCGTCTTCAGGCTCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCTCCGTTGGCCAGGAAGCGCGGCGAGTGCATGGACGTTCGGGGCCGGTTCGATGGTGAAAGGCGGGGCCATGTCTGCGGAATCTTGCTCGGTTCCGGGTGAGATGGGGCAGGGAATATAGGAGGGCGGCGGGTTTCGACTGGTTCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCAGCTTGGCCCGGAGGAATTTCGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGA # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCATGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAACAACTGACGGTGCAGGCGTTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTTGAAGAAGGCTTCCAGCCCCCCTGTGGCGGAAGGAAACAGATTGTTAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGTCAGGGGCGGGATCGGTCCCGGTCCATATCCCTCCTGCGGTCCTTCGCTTGCTAAACGGGGGTGAGCAGGCATATCCCTCGCTGGCTGCTCCTTGACCAGC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203652-204657 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSTR01000006.1 Pseudomonas aeruginosa strain J80UH1OS1 IPC744_6.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203652 29 100.0 32 ............................. TCGCCACCCGCATCGCGGGCCAGCTTTCCGGC 203713 29 100.0 32 ............................. CAGGATGCCGAGCAGCAGCCGGCCAATCCCGA 203774 29 100.0 32 ............................. CTGGGTTGCCAGTTGAACGGCCCTGGTACGGT 203835 29 100.0 32 ............................. CTGCTCGAGGGCAGCAATTCCAACGGATTGGG 203896 29 100.0 32 ............................. TATCGAGGCGTTTGGTCCTACCCGGTAGTGTG 203957 29 96.6 32 ............................C CGGGAGTTTCCGGATTTTCATGCCGAACTGAA 204018 29 100.0 32 ............................. GCCGCCATATCGGCGGCCTTCGGCTGGACGTT 204079 29 100.0 32 ............................. CGCGTGGTGGCGCTGGAGCAGTACCTCTCGCA 204140 29 100.0 32 ............................. GGAACCATCAGGGAACCTTTTGCCGGCCGATT 204201 29 100.0 32 ............................. CCGAAAATGCTGGTGATCGAAGACAACCAGCC 204262 29 100.0 32 ............................. TGGATTCCGGTTGGGAAGGGCGTGGCGGTCTA 204323 29 100.0 32 ............................. CGTCGAGAACGCTTCTCGCCAGTCCTCGAAAT 204384 29 100.0 33 ............................. CTCCGCGTCGATGAGACGACCTACGAACTCATC 204446 29 100.0 32 ............................. GCGTACCGGCAGATGATGGACGCCCGCGCCGA 204507 29 100.0 32 ............................. TCGATCAAGGGCAAGGCCAAGGACCTCGACAA 204568 29 100.0 32 ............................. TGGACGAGGGTGGCATATGAGCGAGCGCGTGG 204629 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 17 29 99.8 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGCTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGACTGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //