Array 1 106344-107165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRM01000009.1 Escherichia coli 2-474-04_S4_C2 e247404S4C2.contig.8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 106344 29 100.0 32 ............................. CTGGCAGCACTGCGGGAAATATTGTTGCTGCT 106405 29 100.0 32 ............................. GCGGTAATTGCGTTATTTTGGCTGTTTTCCGC 106466 29 100.0 32 ............................. TCGTCGGGTCCAACAGGGGTCGGTTGTTCGCC 106527 29 100.0 32 ............................. GAGCTGATATTTTGATAACATCAACAGTTCAA 106588 29 100.0 32 ............................. ATCGCGGCTCGACCCGGAGGCTCTATCTTGAG 106649 29 100.0 32 ............................. AAAAGGGCCGCATTGACGGCCCTGTGTTATCG 106710 29 100.0 32 ............................. TTAGCTGTTAGCCAAACATGTCGACCTGTTTG 106771 29 100.0 32 ............................. GGGTGGCGGTGGTGCTGTAATTCACACCGGTA 106832 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 106893 29 100.0 32 ............................. ACTGGTTTTGTAACCCAAATTTGGGATCATTC 106954 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 107015 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 107076 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 107137 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132868-134116 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNRM01000009.1 Escherichia coli 2-474-04_S4_C2 e247404S4C2.contig.8_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 132868 29 100.0 32 ............................. TCGTTAAAACCGGTCCTAACGGCTTACCTACC 132929 29 96.6 32 ....C........................ GCGAGACGGTAACAGCGGATATTGTGCAGGCG 132990 29 100.0 32 ............................. TACCGCTGTTCATGCCGGAAATTGACCGGACC 133051 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 133112 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 133173 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 133234 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 133295 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 133356 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 133417 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 133478 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 133539 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 133600 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 133661 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 133722 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 133783 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 133844 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 133905 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 133966 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 134027 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 134088 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //