Array 1 20700-20072 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000019.1 Clostridioides difficile strain LIBA6656 .11940_5_90.19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 20699 29 100.0 38 ............................. TTAGTTAAAAGATAGTTATAAAAGTACTTTTCTTCAGG 20632 29 100.0 37 ............................. ATTTTAAAACCTAAACTGTATAGCTCTTTATTTAATT 20566 29 100.0 38 ............................. AGAGAAATTTTATTCAAAAGTATAACTTCATCAGTACG 20499 29 100.0 37 ............................. TACACACAATGGTTTGAAAGAATGTGTGAGTATGGAT 20433 29 100.0 37 ............................. GTATATCATTTGTATAATAGTTTCCTTTATACTGTGA 20367 29 100.0 39 ............................. ATATCTTTTTATGAAAGTTGGTGATATTATGCAGTTCAG 20299 29 100.0 37 ............................. TTGCTTAATAACATCAAGGCGGCGTATTCTCTTGCAA 20233 29 100.0 37 ............................. GGAAACATAATTCAGTCAGTTGCTGTCCCTAAAGGCA 20167 29 100.0 38 ............................. CTATTTTTTAAATGTATTAGAAGAAAATATCAAAACTA 20100 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 10 29 100.0 38 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : AAGCACTGATTTTTATGTGGTTGTATTGTATGAGAGTTCTGGAATAGATTCATATTGGGTTTTTATAGATACTGATACATGGACTGTTCATGATATACAGCGTTTAAATCAAAATGAAGAATTAGTATCATATCATGATGTAAACCCAAATACAGAAGCAGATAAGCATTATAATAGAGATGTTGATGACGTTAATATTATATTTGTTCCATCAGAAAATAATCCTTTTGATAATGATGTAGATGGAATAAATTAAATATTTATTATAAGGAGTTAAACTATAAATTGATATAAATATTTAAAAATAATGTATTTATGATATAATAAAACTATGGAAATTTTGCAGTGAGCGATATTTATGATAAAATGGGGCTTAGCAGTTGAAATATAAGGTATTGAGGGTGTATGATAAGTGTTATCATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTGTATGCGTAGGCATTGAAAATACTCAACTTATTTTGGG # Right flank : AATTTTTAAATAATAGAAATAGACTAGTATTTAGCTAGTCTATTTTTTTCTTTTCTTCTTTTTAATTCTTCCATTATAAATATAGCTGCTATAACTAAATAGTTAACTTCTAAACCGATTGCTAAATCAACTATTGTAGTAACGGTCACATTTTTATAATTACCTTTTTCTAATTTGGAAATATAGCTTTTGTTATAATTAATTTTCTCTGCTAGCTCTAATTGTGTTAAATGTCTCATTTTTCTCAGTTGTCTTAACATAAATTCAAATCACCTTTTAATATATTTTTTAGTAAATTCAGATAATTATATTATGTGCATTTTTGTGGGGAAAAGTTTCCTATTAGTCGATTTTTTTGTTGGAAATTTGTGCTAAAATATAAGTAAGAAATAACTCTATCTAGCTAGAGAAAAATTAAAAGGTAAAAAATTTATGTTAGAATTAAGTATTTAATAAATTGTGGAAAATGTAATAAATTGTAATAAAAAAAATATATTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [81.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 59629-61103 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000010.1 Clostridioides difficile strain LIBA6656 .11940_5_90.10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 59629 29 100.0 37 ............................. CAATTATACAAATTTGAAACATTATCAATATCGACAA 59695 29 100.0 35 ............................. ATATTCCAATCTATCACTAAAGCTTCTTTGTCTGC 59759 29 100.0 36 ............................. CATAAGGACAGTCGTAAGTAGGAGAAATAGGAAATT 59824 29 100.0 37 ............................. TCATTTTTCAATACAACAACATGAACTTTTCCACATA 59890 29 100.0 38 ............................. CAGCTTTCTTTTTTAGATTGCATAGCTGGTTATACTTA 59957 29 100.0 36 ............................. ACCGGAAAACTTGAAGGTGTTTGGACTTTAGAGGAA 60022 29 96.6 36 ....C........................ TATTTATCCTCAAGAGAACCAACTTTAAAAATCCAA 60087 29 100.0 37 ............................. GCGGTTAAGGACTTTGAAAATATCTTGCTAGATGAAA 60153 29 100.0 36 ............................. AGTTTTACAGCTAATTCCTTTAATACCTCCGTCATA 60218 29 100.0 36 ............................. TGTATTATGCGGGCATGGCAGGTTGGAAAACTAATC 60283 29 100.0 38 ............................. ATTAAATTCTAATTTGTTCCCTGTTGCACCTTTTAAAT 60350 29 100.0 37 ............................. GGTAAAAATCGTTCGCATGTTGGTACGCAGATACAAG 60416 29 100.0 37 ............................. TTTTCTCCATCTTGCATAGCGACTCCAAAAAATCCAT 60482 29 100.0 36 ............................. AAGGTTCTTTATATAAGGAAAAAAGAATAAAATTTT 60547 29 100.0 38 ............................. GTTTCAACGTTGCTCATGTGCGAAGGAGTTATGTTTAT 60614 29 100.0 37 ............................. ATATATACCAGTTTAGCACGTATTAATTAATTTAATA 60680 29 100.0 37 ............................. TTACTTAAATATCATTACATATACATTTGTTTTAATC 60746 29 100.0 37 ............................. TATACTTATGTTGAATTTTGGACAGATAAAGTATTAA 60812 29 100.0 37 ............................. TGTAGATATGGAACTAAAGAAAACTTTTCCTGATGGA 60878 29 100.0 37 ............................. TTAAAATCTGTAACACTATATTTTAAATTATATTCAC 60944 29 100.0 36 ............................. CTTATTTATATTAAATCAATTAATTCTTTTATCTTT 61009 29 100.0 37 ............................. ATAATTCTTCATGAGATATTTAGTTTTTCACCCAATT 61075 29 93.1 0 ...............G.......G..... | ========== ====== ====== ====== ============================= ====================================== ================== 23 29 99.6 37 GTTTAAATTACACTAAGTTAGTTATAAAT # Left flank : GAGTATGGAATAAATCTGCTAATAATGATATGTTAAATAATGATACTATTAGTGTTGTGCCTGAATGTCTTTTAGAAGAGTACAAGTTGTATATTGATAAAAAAATGTATTTAGAAGCGAGTTCATTATTTGTAAATGTATCTGTAAAAAGATACAATTATAATAAAAAGATGTTTTATGAATGTGGAGATATAGTTGTTACAAGTTATAGTTATAATGATAAACTAGGTCTAATATTTGATTGTTAAGAGAATTATAGTATAACTAATTAAAATATTTTATTGAGAATTTGTTATAATTTATATCGACTACAAGTTTTATATGTTACAGTAGAATAATTTTGCAGTGAGCGAAAAATATGTGTAAATGGCTGTGAGTTAGTGATGGCAAGGTTTATAACTACGTTTTTGTTTTTAGCTAAAAACACTACTGGTAGCTCACTGCAAATTACCTATTATAATAACACTACAAGTGTTGGAATCACTATAGTTTTATTTGGG # Right flank : TTTACTTATTCATTAAAAAACTTAACTAAGAATTTGATTTATATTATTGAATTAGCAAGAGTCTTGAAAAGTAGAAAATTATACCCCAATAATACCCCAATTACAAAGATAAACAATAAAAAACATTCAAGAAAATTAGCCTAACATCATAACCAAATAGCTATATACCTACATTTACAAAAACCAACAAAACAATCAAATAACCACTTATAGACTCCCCTCGTCTCCACCATTGAAATCCACGAATACCTATATCCAATTGGATATAGGTATTTTTATACATTTTTAATTTAAATATTATTGATAAATACATTTAAAAAGTGTTAACCTAAAGTGAAGAATCTAAATAAAAATACAATATTAGGAGAGGTTATCATTACAATAGCAGCTTGTGATGATGAAAAAGAAATACAAATCGTAATAAAAAATCAAGTTGATAATATATTAAAAAATAAAAACAAAGAATATCGAATTAAAAAAATATAGCTCAAAAGAAGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAATTACACTAAGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 18079-17323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000036.1 Clostridioides difficile strain LIBA6656 .11940_5_90.36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 18078 29 100.0 36 ............................. TGGAGGGGGGAACTCTACACAACACCTCCAAAGGAC 18013 29 100.0 37 ............................. CTAAGTGTTGCCCCCCTATCCTCTTATTTTTGTGGTG 17947 29 100.0 40 ............................. TTGGTTAGAAGAGAAGCAGTATTTAAAGTGTCTGTTGCAG 17878 29 100.0 37 ............................. TTAGACAATATAATTCTATAATAAAAATCCTATTTAA 17812 29 100.0 37 ............................. CCTAGGAGCAACAGGTTCTACATCAAAACAAATAAAA 17746 29 100.0 36 ............................. AGAAGTTAATCTAAGCCTTTTTTTGGTTGGGGATAT 17681 29 100.0 38 ............................. CTATGTGGCGAATGAATAAATTCTCCATTTCCAACAAA 17614 29 100.0 37 ............................. AATGTTTTAAGAAGTAAGTTAGATAAATGTAGTAATA 17548 29 100.0 36 ............................. AAGACGAACGAATCCACGAAAAAATTAGCAGAAGAA 17483 29 100.0 37 ............................. ATATTAAATTATATAAGGTAGTGTTAAGTGCTACCTT 17417 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 17351 29 69.0 0 A.....C.........AAT....AG..TA | ========== ====== ====== ====== ============================= ======================================== ================== 12 29 97.4 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTCTACATCTAAATAGATTGTAGCTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATACAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATAAATTATCATTTTGTTTTAAGATAGAAGATACTAATGCTAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGAGCAGTATCAATAAATATATTGTCTAAATTTTTTCTAGGAACTAGTTGACTAGCTATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTGGTCGTATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCGTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATACTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAAA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 26584-25898 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000039.1 Clostridioides difficile strain LIBA6656 .11940_5_90.39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 26583 29 100.0 36 ............................. CTAAATTGAACAACTCGACAGAAACAGGAGCAATGA 26518 29 100.0 37 ............................. CTTAAAGCCACACCTGCTCCTGCCATTCCAACCATGT 26452 29 100.0 37 ............................. TTTTTATCTGTAGCGTATGTTAGGTTCTTTAACTCTT 26386 29 100.0 37 ............................. GGATAATCTTTTGTATGAACTCCACTCTATAAATTGT 26320 29 100.0 37 ............................. TACTTCCGACGCTTCTTTAGCTGATAAATCAACATGA 26254 29 100.0 37 ............................. CGACACAACAGAAAGAATAAATCAACAAGAAAATAAA 26188 29 100.0 37 ............................. GATACACACCTTCAACGACTGCGCCTTTTAAATCTTT 26122 29 100.0 37 ............................. AATGTAGCTGGTTTAAAATCAATCAACGGTTTTGCAG 26056 29 100.0 37 ............................. GTTCTGAGCAAATACATTAGCAATATTCAACGCTTGT 25990 29 96.6 35 ............................G AATACTATTGGTGCAATAATACTCCAGTTCTGTGC 25926 29 82.8 0 ......T.........G....C.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 11 29 98.1 37 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : TACAAGGTGAGAAGAAGAATTTTCATGTGGTTTATAAAATTGAGTAAATTTATCAGTTGTATTAAATAATATATTTCAGTTTATTTTGGGGGGGGTTAATACAATGTGTGAGAATTTACTTGATATGGATAGAATAGAACTTATTAGAGAACTTGGAAGTATCTTTGAAAAAATGAGAAATGAAAATCCAGATAAATTTTATAGATTTGTAAGTTTAGCGAAAGAGGAATGTAGGAAAAAAGAAGAGAAAAATAAGTAAATAATATAAATAAAGCACTTGGATATTATGTTGTTTCAAGTGCTTTATATGGTAAAAAGTGGTATAATAGAGATAGAAGTTTTGCAGTGAACGACATTTGTGATAAAATATGGCTTAACACTTGAAATATAAGGTGTTGAGGGTGTATGATAAGTGTTATTATTTGCACTACTGCCCGCTCACTGCAAATTTAAGAGAGTTGTGTATGCGTAGGCATTGAAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTAAAAAACACTTACTGTAGGTAGGTGTTTTTTTATTGAAAGGAGTTGATTATAATGTAAAAATTTTACTTATATAGTATAATATTGGTAAAGAATATAATTTAGGGGGATATTATATCATGAAGAAAAAAGTATGTTTTTTATTTTCTATTCTTATAGTTATCTGTTTAGCTATTGTAGGATGTTCTAATTCAGAAAGTCCAGAGGAGAGTAGTAAAAATAATGAACCAAAAAAAGAAGAAAAAAAGGATAAAGAAGTAGTCATAGGAGAGAAAATTATTTCAGATAAAATGGAAATCACTATTAATAATATTGAATTCTCTTATGATGTTTTACCAAAAGTTAAGGCAAGTTTATATACACATTATCCTGCTGAGTCAGGCAAAGTATATATTGATATTGCTGCTGATATAAAAAATACTCAAAAACAAGAGTTAAATTGTTCAGATTTACTAACTATTGAAGCAAATTATAATGATGGGTATAAATATT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 780-1932 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000004.1 Clostridioides difficile strain LIBA6656 .11940_5_90.4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 780 29 100.0 37 ............................. TTTTTTGTAATAATTCTAATATTTTTTCATCCATTAA 846 29 100.0 37 ............................. TCTAATATTTCAATATCTTCACATATCTTATATATTA 912 29 100.0 38 ............................. ACTACTAAGAGCTTATATAAAAGACACTCAATATTCAA 979 29 100.0 37 ............................. AAAAAATGGGCTGATGAAATGGGCATAACAAGAGAAA 1045 29 100.0 36 ............................. TCACTCTGCTTATAGCCTTATTAGACTGTTCTCTAC 1110 29 100.0 38 ............................. ACTATAAAAATACATCAATTCTATAATTTTTTGTTCGA 1177 29 100.0 37 ............................. CTCTTTTGCGCAGAGTGGTTTTTTACTTGTCTAAATA 1243 29 100.0 38 ............................. TAAGTGCGTCGATATTAGTGTTTGAACTTGCAGCAGTT 1310 29 100.0 37 ............................. GTCTTGGTTGTTCCTGCTCCGGTGTTGGTGGGACTGG 1376 29 100.0 37 ............................. TTTTTATTTGTTTTTGCAATCTGTAATAAGTTAATAT 1442 29 100.0 37 ............................. TTTGAAACATTGTCATAATTACAAGATATTGTATTTG 1508 29 100.0 37 ............................. TTTTTAAGTACATTAAACATTTCTTCTGCACTATGAC 1574 29 100.0 37 ............................. CGTTTTATCTCATTTCTATAATGAGTTAAATAATTAA 1640 29 100.0 37 ............................. CATAATTATTTGCACATGCCGAAAACTCACACTTTAT 1706 29 100.0 36 ............................. ACAGCAGATATAGAACTATAGCTCGAAGGAACATTT 1771 29 100.0 37 ............................. GCAAATCTAATTACATTTTTTAATTTATTTACCACAT 1837 29 100.0 38 ............................. GGGACATACGGAAGGTCGTAAGCAACTCCAAAAAGAGG 1904 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ====================================== ================== 18 29 100.0 37 GTTTTATATTAACTAAGTGGTATGTAAAG # Left flank : CTATTAACTTATGAAATATCTGTAAATGAGTAGATATTTCATAAGTTAATATTTATTGTTTATATAAAATATTTGGTAAAAATAAGTAAGTTTTATATGTTATAATAATTGTAGCAAGAATAATAATCTAAAGTGGCAAGCATGTCAGCTGGTGTTATATCAGTTTATATTTATGATAAAATAAAAATCTCCCAAACGCCAATAAGGATGATTTAAAAAAATAATATTTTCACTTAAAAATAATCACTCTTTATAGGAGTAAATTATTTTCTTGATTTTATTGTACTACAAATTGGTACAGATATTTAAAAATAATATATTCATAATATTATAAATAGTTTTGCAGTGAGCGATATTTTTGATAAAATAGGGCTTAACAGTTGAAACATAAGGCATTGAGGGTATATGATAAATATTATCATTTGCACTACTCGTGGTTCACTGCAAATTTGAGAGAATTGTATAGATGTAAGTGTTGGAAATACTCAATTTATTTTGGG # Right flank : GACAGATCTAATATCAAAATAAGGTTATGACTTTTAAAAGCATAGCCATATCAATAAAAATTTAATTATCATTTAAAAAATAAATTTTTATTTAAAGAATACACATAAATATTTCCAGACTTAACTCTCTTAAACCATTTTCATATCCTTTAGTAGATACTTTTGTTATTTTTTAATCTTTAGTAACTTATTCTTGAGTGAATCTCTTATTTTTTCTAAGCTATTTCAAGCTTCTCAAAAAATTCTATATTTATATTCATCACATATATAATACAATTAATTCAGTTTTAATTGCCAATATTTAGTTTTTCTGTATCTGATAAACCAAGAATATAATCAGTATATAAACCAAAAATTTTAGCAAATATTATTAACCCATCGTCTCTTGTTGGTCTTTCACCAGACTCTATTCTATTCATAACACTTGTATTTATATTTGTTTTTTCAAGCAATTCTTTTTGAGAACTATTCATATTTTCCCTAGTATATTTAATTCTTTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 14580-13826 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000037.1 Clostridioides difficile strain LIBA6656 .11940_5_90.37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 14579 29 100.0 38 ............................. GCAAAACAGATAAAACAAGATTAATAATAGATGCTAAA 14512 29 100.0 35 ............................. CCTATTTAGCTGATAAACATATTATATTAAACATA 14448 29 100.0 37 ............................. CTTTCTGAAGCTAACGCACTACTTGGAATACTCGCAA 14382 29 100.0 36 ............................. TACTTTAGCACTAGTAAATGTAGAATTATTAAAGTT 14317 29 100.0 38 ............................. TTCAGAATACTTAGCTCCTGCGCCTATATCGTCTGAAT 14250 29 100.0 37 ............................. ATGTCCCCACATCAATTTTCCTCCGCATGAAAAAATC 14184 29 100.0 37 ............................. TTTAGAAACAACAGAATAAACATAATATATAAGCATA 14118 29 100.0 36 ............................. CTATATCGCATATTCTTTTATCTAGGTCTTCTTTTC 14053 29 100.0 39 ............................. TTTTACTTTTCCTTTCTATGTGTCCAATTCGGACACATT 13985 29 96.6 37 .................A........... CTTATACTTAGTTAGAACTATATATCGACACAAATAT 13919 29 86.2 36 .C.............CA......A..... TGCAATTTTTATTCGTTGTCCAATCGCTTGAAATTT 13854 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ======================================= ================== 12 29 98.3 37 GTTTTATATTAACTATGTGGTATGTAAAT # Left flank : CTATTATTATATATAACTGACACTTAAGTGACATTTAAGAAAAATATAATGCTTACTTACATAAAATGGAATGTTATTTAAAGAGAACTTTGATTATATTTTCAAAAGCTTTTTTATCCATATCGTTTAAAACAAGAAAATATCTATTCATAGTTATTTTTATATTAGTATGTCCTAATCTTTCAGAGATGATTTTTATATTAGTTCCAGCTAGAAGAAGAATTATTAGAATAGATAATATAGTAAGTATTTACAAATATGTAGGTGTTCTTAAATTGATAAATTATTCCATTTTAATTTTATAGTTTGAATTTTATGATATAATAAAAATATATAAATTTTGCAGTGAGCGATATTTTTGATAAAGTAGGGTTTAACAGTTGCAATGTAAGGGATTGAGGGTGTATGATAAATGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGAGTTGTATGTGTGTAAGTACTGAAAATACTTAGTTTATTTTGGG # Right flank : TTGCAACAAGTATAGGTAAAATACCCCAATAATTTATACAGCATTTTCTACTTTAAAATATAATTATTTTTTATCACTTGTAGTAAATAATTACCAGATAACATTGACTTTAGTTTTAATGATTAAAATATAAAAGTAGAATAATTATAAAAAGTATTGAAAAGTTTATAAATATATATAATAAAACTTAATGACAAGATATTAGATATAAAAAATAATTATCTTATAAATAGATTGAAATTTATGAATATTCATACTATAATTTAAATATAAAGAGATGTCCTTTAAAAATAAAAATTAAAAAATATTTAATGCTACTACAATAGGAACTAGAACTGCACTTAATAAATATACAGAAATTAGATTTGGCTCAATATAAAATACAAATATAGAATTTAGGTGTTTTTTATGAAAAAAATTTTATATGCTTTATATAGTTTCATTGTTATTATAGCTAATTTTAGATTAAAAGAAAAAAATTATAACTTTATTTTATTAGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 35382-37199 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000007.1 Clostridioides difficile strain LIBA6656 .11940_5_90.7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================= ================== 35382 29 100.0 37 ............................. CTATAAAACCACTTAAAAAAAGCCTTGTCCAACTATT 35448 29 100.0 36 ............................. CTGGAATATCAAGATATCGCAAGTATAAGAGGTTGT 35513 29 100.0 37 ............................. GTGCTATACTAAAGCAAAAGGAGGCGATACTATGGTT 35579 29 100.0 37 ............................. TTTCTTAATCCTCCTTTTTTTCTGCAAAAAATAAGAA 35645 29 100.0 39 ............................. AAAAATCTTTTTTATCCCAAAACCAATTTATATTATAAG 35713 29 100.0 37 ............................. AATTAATTGAAATAAAAAAAGGAACATTACCTATTTT 35779 29 100.0 36 ............................. TTTACAATAAACTCTTTTTCATCTAGCGCATTACCT 35844 29 100.0 37 ............................. GATACAGAATTGTAACTCGAAGGAACATTTAAAAAAA 35910 29 100.0 37 ............................. TACCCTTGTATTTGCCTAATGCGATATAGAGCAAAAA 35976 29 100.0 39 ............................. AGCAAATAGAGTTGACAAAATTAATCTAACAGGAATAAG 36044 29 100.0 37 ............................. AACAAAGAACCATTTGAATCACGAAAACTAAAAAACA 36110 29 100.0 38 ............................. TTATTAACCTTATCAGAAACCTGACCATCCCAATTATA 36177 29 100.0 36 ............................. TCCATTTGTCTAATGCTTCTAACTCTTTTTTTATAC 36242 29 100.0 38 ............................. TCCAAAATGGGCTTGGAGTTAAGAGTTGTATAAGAAAC 36309 29 100.0 38 ............................. TAATTACACACTCCCTTTTAACGAACATATTTTAGATT 36376 29 100.0 37 ............................. AGTTGCGTAAGGTTGATAAAGTCTTATATCAGTTGCT 36442 29 100.0 41 ............................. AGACTCGACATAGAATCGGTTACTAAATCCGAGGGTTTCAG 36512 29 100.0 37 ............................. ACAATATTATTGTTCATTTCATTTAATAATTCTAGTA 36578 29 100.0 37 ............................. TTGTTTATACCTTTAATCTTTAAAATTAAATATAAAA 36644 29 100.0 37 ............................. CATTGTATACTAAGCTTGATATAGTGCAAAATGAAAC 36710 29 100.0 38 ............................. TTTTTAAAAAATGTGTTTGATGGTTTAACTGATGATGA 36777 29 100.0 39 ............................. AAGATGGGAGGATGATTATAATTAATTTGACGAACGTAA 36845 29 100.0 36 ............................. GTTTCTGAGATTGTAAATACTTTTGTTGTTTGGTTA 36910 29 100.0 37 ............................. GCGATAAGAGATTCGAGTCTTTTTACTGGGCTTAATC 36976 29 100.0 37 ............................. AGGATAAAGAAAAGACTCACACAAGACACAGTGTCAG 37042 29 86.2 36 .........C............GA...G. AGAATATTAGCAATATCAACGAGTATTTAGAAACTT 37107 29 75.9 35 A...........TA...CA....A....A TTGTAGAATAAACAATAGCATATACTAAAACATCC 37171 29 75.9 0 ACC.............A.CA...C..... | ========== ====== ====== ====== ============================= ========================================= ================== 28 29 97.8 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : CATTTTATAAATGATGAAAGGTACAAAGTTTTAAAGGTGTGGTGGTAAGTATGTTTGTTATTGTTACTTATGATATTGTTGAAGCAAGGTCGTTAAATAGAATTAGAAGGATACTTAGAAAATATTTGACTTGGACGCAAAATTCTGTTTTTGAAGGCAATATTACTGATGGAAAGTTACATAAATGTATTTCTGAAATAGAAAATATTATTGATAATAGCGAGGATTCAATCTATGTTTATGAGATAAAAAATCCTAATTCAATTAAAAAGAAATGTTATGGGATTGATAAGTATTCTGATGAAATGTTTATATAGGTTTGCAGTGAGCGATATTTATGCTAAAATAGGTGTTAACAGTTGGAATATAAGGGATTGAAGGTGTATGATAACTGTTATCAATTGCACTACTGCTCGCTCACTGCAAATTTTGATGTTTTTATTGAATTATAATTGCTTGATTGAAGTATTTTCAATGTATTCAATTATACCTATTTTGGG # Right flank : TAAAATGCACTTACCTATAAACATTATAAAATCAATACAAAAATGAGGTGAAACAAAATTTATGATAAAGAAATTAAACAATAAAGACATAAATAAAATCATGGAAATATGGGAAAAAAGTACAATCAAAGCACATGACTTTATAAGTAAAGAATACTGGCAAAATAACTACAATACTGTTAAAAACGAATATATACCTATATCAGATACATTTGTATATGATGATGGAGATGAAATAAAAGGATTTATAAGCATAATAGATAAAAGCTTTATAGGAGCTTTATTTATAGAACCCAAATACCAAAATCTAGGTATCGGAGGTAAACTTTTAGATTATGCAACTAAAAAATATAAAAGTCTAAGTTTAGCAGTATATAAAGATAATAAAAAAGCAGTTGTGTTTTATAATAAAAAAGGTTTTAATATAGTAAAAGAACAAGTAAATGAAGATTCAGGATTTAAAGAGTACATAATGGAATATAGTAAATAATATGATTACA # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 93156-92793 **** Predicted by CRISPRDetect 2.4 *** >NZ_LJCL01000017.1 Clostridioides difficile strain LIBA6656 .11940_5_90.17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 93155 29 100.0 37 ............................. TTAATATTTAATTCATCTGTCATAGTATCTAATAAGT 93089 29 100.0 38 ............................. TTATTCATTAATTGAAATGTTAAATCTGCTATTGTTTG 93022 29 100.0 36 ............................. CCACTTGTTCTTCAATTATTTTATCTACGCAGCCTA 92957 29 100.0 40 ............................. GAAGATAAAGTAGAAGAAGTTCAACTAGCTATAGAAACTG 92888 29 100.0 38 ............................. CCATCTTTTGTTGTTTTACATAAATTTATATTACTTAC 92821 29 89.7 0 ........C........C.....A..... | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 98.3 38 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : GATAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGGGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACTATTAAAAGCAATATACAAAAATGATATATTAGATTGATTAAACAAGTATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTTGCTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGGAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGCTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAGGAGAGTTGTATACGTGTAAGTGTTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTTATAATTTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTATCAGTGTTTTATTATAAATAGCTTACATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGCTAATGATGTTATTGCAGTATCTAATCTTCTTATTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCCATACTTTAATTCTAATTTATCTAAAGATTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAATTTTCACTCTAACAAGTATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTTATG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //