Array 1 36567-37374 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKB010000021.1 Pseudomonas aeruginosa strain ZYPA35 NODE_21_length_80742_cov_30.037021_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 36567 28 100.0 32 ............................ GTAACGAACGCACGGCGCACGCGTTGCGAGTC 36627 28 100.0 32 ............................ CGCTGCCATCCGGCGCATTTCCCTCTCATAGC 36687 28 100.0 32 ............................ AACATCCAGCCCGAGCTGAGCGATATCCCCCG 36747 28 100.0 32 ............................ TGCTCGCTGATGACCAGCCGCAGCGCATGGTT 36807 28 96.4 32 .......................G.... CGCAAAGCCCCGCAGGACAATGACTTGATATC 36867 28 100.0 32 ............................ AATCCGAGGCGGAGTTCAGCCACTTGGCATAG 36927 28 96.4 32 .....................C...... GCAGTGATCGAGCGCGCACGGTCGCGCAAGAC 36987 28 100.0 32 ............................ AGAAGCGCATCCAGCGATACGAAGATGCACTC 37047 28 100.0 32 ............................ AACCAGCGTGTCGATGCCGAAGCGAAGGCCCG 37107 28 100.0 32 ............................ AGTGAGCACGATCATCATGTCGGCCTGCTGGC 37167 28 100.0 32 ............................ ATCACCGGAGGCCACGGATTCGCTGTAGCTCA 37227 28 100.0 32 ............................ ACCAGCTGCTGCGAGTGCTGGTTCGCGCTGGC 37287 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 37347 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.4 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 47487-45899 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIQKB010000021.1 Pseudomonas aeruginosa strain ZYPA35 NODE_21_length_80742_cov_30.037021_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 47486 28 100.0 32 ............................ ATCGGCGAGAACCTGAAGCGTGCCAGGATGAA 47426 28 100.0 32 ............................ TTAGCGATCAACTGATCAGCGATAGTCCTGTA 47366 28 100.0 32 ............................ GAATCCGCCGAACAGTTCTGGCCGTTTGTCTT 47306 28 100.0 32 ............................ TATTCGGTGAACGATGGCGGCGGGACGAATCG 47246 28 100.0 32 ............................ GACGACGGCGACGCGCTGAGGCTGGCTGTGAA 47186 28 100.0 32 ............................ CAGTCAGAGGGGAACGACCCGGCTCCGGCAGA 47126 28 100.0 32 ............................ AATACGTATAGGTCGGCTCCAGTTTCATTCTT 47066 28 100.0 32 ............................ ACATGCGACCACCATCGAGAGGAAACGTGCTA 47006 28 100.0 32 ............................ TTAGGCCTTCTTAACGCCGCGCTTGCCCAGGT 46946 28 100.0 32 ............................ AGCATGTTAGCCGCCTCCGCTGGGATCATTGC 46886 28 100.0 32 ............................ ACTTACCGGGTAGCTGTACCTGATGACGTACT 46826 28 100.0 32 ............................ TACGGCCTGCCGAACAAGCCATTCATCCTGCA 46766 28 100.0 32 ............................ GCCAGGTGCGCGCGCGATGACGGTGAGCCTTC 46706 28 100.0 32 ............................ TTGACCCATCCCAGGATGTAGCGGACGACCGG 46646 28 100.0 32 ............................ TACGGACCCGACTGATCCTAAAGACCCTGGTG 46586 28 100.0 32 ............................ ACGGAAATTCTCACCCAGGCCAGCAGGCGTAT 46526 28 100.0 32 ............................ GTTGGCATTGACGAACTCTACATCGACGCCGT 46466 28 100.0 32 ............................ ATGTTCTACAACGCCGAGGAGCGCAGCTGGTT 46406 28 100.0 32 ............................ GGCTTGTCTGGGAATCGTGCGCGGTCTTCGAG 46346 28 100.0 32 ............................ TACAAGTTCAAGCGCGACGGCAAGGAATGGGA 46286 28 100.0 32 ............................ GACAAGAAGCTCCAGGGCACCGGCGTGAAGAT 46226 28 100.0 32 ............................ GGTGTCCTCAACGCGAAGCTGACCGAACTGAA 46166 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 46106 28 100.0 32 ............................ TGATTCAGGAGTGCTGGCAAGCGGTTACAGCG 46046 28 100.0 32 ............................ AGCAGCGGCTCCAGAAAGAGGGGCGCTGCCTG 45986 28 96.4 32 ..C......................... TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 45926 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGAAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACGGGTACCTCCATTACTCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //