Array 1 134378-132911 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLO010000011.1 Limosilactobacillus oris isolate Lactobacillus_oris_BgEED19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================================================== ================== 134377 29 100.0 32 ............................. GACAAGCCCAAAAAGGAGGCAATGGCAATGAC 134316 29 100.0 32 ............................. AACCGCTTCGAACCGGTTGAAATGGATCCAAG 134255 29 100.0 32 ............................. GGTGGTATCGGCGCTATTGATGCTGTTTGGAG 134194 29 96.6 32 ............................T TGTGCTCCGTTCGGCAGTTTAATTGTGTAGTT 134133 29 100.0 32 ............................. TGTCATGGTGCCCAAGAAAGATGGTACAGAAA 134072 29 100.0 32 ............................. TGACATGGTTAGTCCTCCCTTAAATACTTGTG 134011 29 93.1 32 .......T....................T TAGCTCCATCCACTTGCGGAGTGCCGCCATGT 133950 29 96.6 32 ............................T CACCTTTATCGAATTTCATATTCCCCTCTTTT 133889 29 100.0 33 ............................. TTGTAGGCGCCTTAGGGCGTCCTGAACTTTATA 133827 29 100.0 32 ............................. CAGTTCGTGAACGAGTGTTTGCTTAACGTGCT 133766 29 96.6 32 ............................T TGAACTCACGATTACTAGATACACGACCTCAG 133705 29 96.6 32 ............................T TCATGAGCTCCCCACTTGATGCCGCCAAGCAA 133644 29 100.0 32 ............................. CAAACGGCATAACTACTTGGTTCTGTGGGATT 133583 29 100.0 32 ............................. ATGAAGAATGGCAATCCTGCACAAGGGCTTTT 133522 29 96.6 32 ............................T AGTGCCGCAGCCAATTGGGTTAGGCCGAATCA 133461 29 96.6 32 ............................T AACCCCCTTTCGTTTAAGCACAGTTTCTACTG 133400 29 96.6 32 ............................T TAACCGCAGAACAGAGGATAAAACTGGTTCAC 133339 29 96.6 32 ............................T GTATTTTCTACGCCTGACAGGGATGGTCGATA 133278 29 100.0 32 ............................. ATTTAGCTCATACCAAGGACTTACTAGCAGAA 133217 29 96.6 32 ..............T.............. ATTTTAGAAAGCGCTGGACCGGCCTTTCCACC 133156 29 93.1 32 ..............AA............. GGACAAACTACTTGGCGGGACGATCGGCGGCC 133095 28 89.7 67 ..............T.....T.-...... ATATACGTAGGGCTAAGCTATCGCATTTCTCGTACGGTATGTTGTATAATACAACCATTAACTTTTG 133000 29 82.8 32 A............GTA............T GAAACGATATTCAATGAGATGGATATCCAAGC 132939 29 69.0 0 ...........ACTT.......CA..TTA | ========== ====== ====== ====== ============================= =================================================================== ================== 24 29 95.7 34 GTATTCCCCATGTACGTGGGGGTGATCCC # Left flank : TCTGCGCAGATTATTTCAATTGGAGCGGTGAAACGAGTAGCTGGGCACACGACAACTTTTTATCGGTTAGTAAAGCTGGAATCGGGCAAGAAAGTGCCGGTGGATATTGCCCGCATGACTGGATTAAATAATGAGCGTTTAGCTGCGGAAGGCGTGTTAGTTAAGGAAGCATTGATAGACTTGCAGGCCTTTACGAAGGGCCTGCCAATTGTTGGTTATAACTTACTTTTTGATGAACGCTTTTTGCAAACTGCAGTTATTAGAACGGGCATTGTTCAGTTTAATAATAAGATGGTAGATGTGTTGCCATATGTTAAGACGACTGATAAGTTTTGCGATAATTATCATTTAACAACTGTCCTAGCCAAGTATGGCGTTAAAAATGAGCAACCACACAATTCATTAGCGGATGCAACAGCGACTATGGAGCTAGTTGATAAACTCATTAAAATTTACGGCTTTCGAATATAAAAACCGCGGCCCATCAGGGATCTTTTAGT # Right flank : CTATTAGTACTTTCTTTGATAGTATTCAGTTGCGTTGATATATCAAGGAGTACGTATTTCCTTAATTTGCGCCACTATTGCAGTGCCAGAAAAAGGCGTTGTAGTAGTGGCTTTGCTATTTTTTAAAGAGCAGCCCCATATTTACATTAAGGATTATCAGCAATTTTTCTTGAATAAGGGATAATAATCCTGTATTTATATTAGAGAGCCCCACTGTTTTAAATAGGAATTAGAAGACCAGGAGGTGACCTTTTTGAGAGAATACAAAAATAAGGAAGAACTCAAAAGTGAAATTAATAAGTCATTCGGAAAATATATTTCTGAATTTGAAAACATTCCAGAAGCTATGAAGGATAAACGGGTCACCGAAGTTGATAGAACGCCAGCAGAAAATCTTGCTTATCAAGTGGGGTGGACGACCCTCGTCCTCAAATGGGAAGAAGACGAACGGATGGGTCTCCAGGTTAAAACACCATCAGATAAATTCAAATGGAATCAAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATGTACGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [18-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 146677-146282 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABFLO010000011.1 Limosilactobacillus oris isolate Lactobacillus_oris_BgEED19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 146676 29 96.6 32 ............................T CGTAAGCAAGAAAAAGCTTTATGCGAGTTCGC 146615 29 100.0 32 ............................. GCCAACCAGGCCATTGCCGAAGCTGACTACTT 146554 29 96.6 32 ............................T ATCCAGCACAATCTGAGTGGACTTATAGTTGT 146493 29 100.0 32 ............................. AGTCTTTTGGGCCAGGAACTGGTGCTTTTCGC 146432 29 100.0 32 ............................. GCTACTAGCATGGTCAACTGCTGTGAGGTGTA 146371 29 100.0 32 ............................. AGGGGATGCTTAAAGGCACGACGCCACGGGTC 146310 29 89.7 0 ..........................TTT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.6 32 GTATTCCCCATATACGTGGGGGTGATCCC # Left flank : TGATGAATGGGCCTTTGACCACTTTAAGAACAGCCTCGGTGCTACCATTGTTGAATAGAAGTGAGAAATAGTAAAAGCATTCTAGCTCGAGATATGAAAATCCGGCCATTGATTTTTGGAATTCCAGAAATCAATGGCCGGATTTGTCTTATATTAATTAAAAATAATCCCTGGCCAAAATAGCTGAGTGCCGGATAGCTTAAATGTGTTTTGACAGTACCTTACATTGTAGGGAAATGCTGGAATATTCCTCGCAATAGTGTTCCGAGAATGGGAAGGATGAGGGTATAACGGTGCTTGAACGTAAAACAGCTATTAAAGTAGCACCATTTCTGGACTGCAATAGCATATATTGATTTAAATATTTCTCATAGTTAATTAAAATGGGCGAAATAAAACTTCATAGAAATTAGTTAGGGGGAGGTATATCAGATTAGCAAACTAAATAGAAATTGAGGTATACTTGGAGCAAAAGCTTGATTTGCTGGTAATCTTTTAGT # Right flank : TATGCGGTATTCCGTGCCCTATTTTTCTTCTGTATTCCTCATGTGAGTGTGGGCTTCCGTACTTGCCACTTTCTTTCCGGCATTATGTCCTATTCTCAGTGTGTGTGTTATGCCAGGAAGCATTCCAACGGTGCTTCCTTTTTAAGTGCGGAGGAAAATAATCATGAGTAAGGAATATTATTGTCAAGGCGATGTGTTGTACTTTGATTTTGGTACCCTGGAGGGAAATGAAATCGGGGGTATTCGGCCAGCAGTAGTATTATCTACGAATACCTACAATAAGCACACACATTCATTAATTGTGCTGCCAGTTACTACTCGGGGCACTAATTTTAACTGTTATGTACCTTTGTACGGGTATAAGAATGTTCATGGACGAGTTAATACAGCACAGATCTACAGTTTTTCGACAGATCGAGCGAGGTCAATGGCAATTGATCATTTAACATTCGAGGACTTTCGACGTGTCCGTTTAAGAACAATGGAGAATATTTTGTAAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCATATACGTGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.40,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //