Array 1 143158-144052 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPP01000003.1 Streptococcus cristatus strain A55 D8795_contig003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 143158 36 100.0 30 .................................... AATCATAAAAAATAATCATATGTCTCATTC 143224 36 100.0 30 .................................... ATTTAGGCGTATAAGGGCCGAAGTAGTTCA 143290 36 100.0 30 .................................... TGTTTCTCAAAACAGAGTCAGCGACATTGA 143356 36 100.0 30 .................................... AGTGTTGTCATAAAATCAATAACATCAAGA 143422 36 100.0 30 .................................... GGAGGAGACTATGGCACAGCGGAGGATGTT 143488 36 100.0 30 .................................... CCTGTTCTTTACTCATAAAGTTTTGGTTCC 143554 36 100.0 30 .................................... TTTTCTCCCGTAAATCTTCATTCTCGGATT 143620 36 100.0 30 .................................... TAAATTTATTGATTTTATGATCGCTGAATA 143686 36 100.0 30 .................................... TACGTGAAGTAGATGTTTCTTAAATCATTC 143752 36 100.0 30 .................................... AAACTGTTCCTTTTACAGCCAATGATCCAG 143818 36 100.0 30 .................................... GATTTCTCAGGATTCTATATTGCTTTCAGA 143884 36 100.0 30 .................................... CCACATCAGAAATAATCCCTTTTTTCTTTT 143950 36 100.0 31 .................................... CATCTTGCCTTGCGTGTTGACTGTAGCTTTT 144017 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 14 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTATCTGACTTACCAATCTTTTGTAAAGTGTTGCAAACGCCTCCAAATGATGACAGAAAAATTTCCTAATATTTATGTGATATCTTTTCCTTCAAATGAAGGCTATCTTCATATCAACAGAGAAAATATGGAATTTGTTAATATTATTTCTGGTTTTATAGAGCATTACTATGAATTTCGGTTTATGTATGAAAGTTTTGTACAACGTTATCCATCCAACGAGATTCCCAATGAAGAAGAATTTTTAATTTCCTTGCAAAAAATTTCTCCTTATTTATTTAGCTCTGATGTGGAGCATATGAGTCTTTCGATTTATGATATGGTCACTTTAAAAATTATGAATAGCTTATACCAATATGATAAAATTATTGATTTTAAAGTACAGATGGCTAATCCATTATTAACAAATTTTTTAAAATATTAGACTTGACAAGCTTTTGGGGAGAATCTATAATCAGTATGAGAGTACAAAAAGCAAAAATTTTTAATTTGAG # Right flank : CAGAAGAAAACTAAGCGGGCTTGGTACTGGTCTCATAAAATTGATTTTTATCTTGACAAACTTATTACTGGGAACAAGCAATGTTGTAGATGGTTCTGGAAGAATTCGAAAGTTAAGATTAGAAGGAAAAGTAATTATGGAAAATTCAAACCAAATATCCCAATGTCAGACTCTTTGGGCTAAAAATAAGTATCTGGTGCTCAGTCATTCCAGTAAGATCTATCTGGAAATCCGTCAGTATCTGAAAAGCGATTTGGTGGAAGCAGCACATGTTCAAGACTTGATTGATCAGGCGGTAGCCCTGCCTGAAAATCGCGGTCAGGTCTGCAATGCCTTTCAGCATGTTTGGGGCTATTTTAAGAAAAAAGCCAGCCCAGCTGAAAAAGAAAACTTTATGCTATTTTTAGAGCGATACCAAGTAGGTCAGGTGAAGCAGGAGGTTTTGGTAGAAGCTGTGACAGATTTGCTTAGAAAGTACCCCAATCCCTATCTGCAACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 195027-193536 **** Predicted by CRISPRDetect 2.4 *** >NZ_RJPP01000001.1 Streptococcus cristatus strain A55 D8795_contig001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 195026 32 100.0 34 ................................ ATGGGAGAGACTAGGTTTATTGAAAATCCAGAAG 194960 32 100.0 36 ................................ TTTGCCAAGCGCTTTTCCTTGTCTCTGGACATTCCT 194892 32 100.0 34 ................................ AATCATCATTGCGAATAACGGAAGTACCGTGACG 194826 32 100.0 34 ................................ TAATTTATGGGACGGCATTAAATCAGCCTTTACT 194760 32 100.0 34 ................................ AAAATGAGAAACAATATCAGAAATCTCAAAAACA 194694 32 100.0 34 ................................ CGATATCACCCAAAGTATCAACAATGAGCGCTTT 194628 32 100.0 34 ................................ AGTAAACTGTGGGACGGCATGAAGAAGCTAGCTC 194562 32 100.0 36 ................................ ATGCCATCGCTCCACCCCACAGTAGAAACCCCTGTC 194494 32 100.0 34 ................................ ATACTTTTTGTGACATGGGTGTAGATTTGCATGG 194428 32 100.0 34 ................................ GCGTTATCAGCGATTGTCTTGAATGATGCAGCAA 194362 32 100.0 36 ................................ ACAATCTTCATTATGAAAAACTAAAGCATTCATCTT 194294 32 100.0 33 ................................ AAAAGCTGCCAGCCAAAAATAGCCTGCAGCAAA 194229 32 100.0 35 ................................ AAGCATACTGTCCGCTATGTTTGGGGGAATAAGAC 194162 32 100.0 34 ................................ TCAGTTGCTCTCGGTGTCGCCGTCTGCGCCTTTC 194096 32 100.0 35 ................................ TTAGGTTCATCATAGCCTAGGGCTCGCTGGCTATC 194029 32 100.0 34 ................................ ACCAGCACCAGCAGATACTGTACCGTGTGTTGTC 193963 32 100.0 34 ................................ ATACAGCGTTTGGAACTTCTAAAATAGAGGTGTC 193897 32 100.0 33 ................................ ATCAATCGCATTTTGAATAGATTCTGGTAAATC 193832 32 100.0 34 ................................ AGATAAATAATTGTGTGTGTGTCACCGCCAGCGA 193766 32 100.0 34 ................................ AATGAGTGATTGAAAAGTAAATACGATGTACCCG 193700 32 100.0 37 ................................ AAAAATTAGGATGCAGATACGTCTCTGGACCCTGAAG 193631 32 87.5 33 A......T......A..A.............. GGATAAACTGATAAAGTTTATTTGATTTTTTAA 193566 31 84.4 0 .......T........A..........-..GC | ========== ====== ====== ====== ================================ ===================================== ================== 23 32 98.8 34 GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Left flank : CCAAGACAATTCGTGGAGAATTGGAATCCTATCCACCGTTTTTAATATAGGAGCCGGTTTATGATGGTATTAGTAACATATGATGTGAATACTGAAACTGCGCAAGGCAGGAAAAGGTTACGTCATGTGGCAAAATTATGCGTTGATTATGGGCAACGCGTTCAGAATTCAGTTTTTGAATGCTCAGTAACTCCTGCAGAATTTGTAGAAATAAAAGCTAAGCTTTTGAGTATAATTGACACTGAGTCCGACAGTATTCGTTTTTATTTGCTAGGAAAAAACTGGCAAAATCGTCTAGAAACGATTGGACGTGATACAAGTTATGATCCTGATATAGGGGTATTACTCCTTTAAATAGTCTAGTGCGAATGGATGTTACTCAGAAAAAAGCAGGACTTTCGCGCAAAAAATAAACAAAAATAAGGCAAAAATTCGAAATTCTAGAAGAGTTTACTTTCCTCGAAAGATAATTTTTGCCTAAAACAGTGCAACTACGCGCT # Right flank : ATTGGCTGACAGACTTGTTGTCTGTCGCTCCCTCCCAGAATGTGTTTTTTCATGAAGCCATTGTAGTTAACAAAGATCTAACTTCTACTTTTGGTTGGAAGGTTATTTGTCAGTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAATTTATGAACACGAACTATATCCAGATTATCTGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAACGACACGAAGCTCCCCATAGTCAAATAAATCCGATTCTTGAAAGGAGAGTCGGATTTTAGTTTTGTTTGATTTCGATTTTTGTGCTATAAATTTTTTGCAATATCTGCTTGTATTTTCCTGAGATTCTGCTATAATGGTAAAATATTTATTTAGGAGGAAGAGAATGAGCTATATTTTGGAAATTTTACCTAGTCTTCTAAGTGGAGCAGCAACTACCTTGCAGGTGTTTGCTTTGGTCTTGGTTTTTTCGATTCCTTTGGGAATTATGCTGGCTTTTTCGATGCAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTTCACGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //