Array 1 5365-6795 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGW01000091.1 Salmonella enterica subsp. enterica serovar Infantis strain Sal280 contig_113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5365 29 100.0 32 ............................. GGGCACGCGGAGGTCTACGGCGAATATATTTA 5426 29 100.0 32 ............................. GCGCTGCTTTCCTGAAGAGTGCCCATGCCAAA 5487 29 100.0 32 ............................. ACTCATTAACTCCCAGTTCATGCCGTGATCAC 5548 29 100.0 32 ............................. CGATCTTCTCTTTTGAAAACCACTGTTGGGAT 5609 29 100.0 32 ............................. GCAGTAACGGGAAATCCAGTGGCGGCAGTATT 5670 29 100.0 32 ............................. GCCACCGGTGCGGCATACAGTGGGATCAATAT 5731 29 100.0 32 ............................. ACAAGGATATTCTCGTCTACGTTATCCAGTTC 5792 29 100.0 32 ............................. GCCGACGCCATCCGGATAGCGCTGTCAGCTGC 5853 29 100.0 32 ............................. ATTGCGGCAGAGGGTGTCAACACAGAGGGCGT 5914 29 100.0 32 ............................. AGCCGTGAAACGCTAATCGCGCTATTGAGCGA 5975 29 100.0 32 ............................. TGTCCACCGGCACGACCTATTCCAACAGCGCC 6036 29 100.0 32 ............................. CTCCAGTATTTAAAAAGCTGCTGATCGCGATC 6097 29 100.0 32 ............................. GAGATCGACCTCTCCCATGTTGTGCCGGTTAC 6158 29 100.0 32 ............................. CTGTTTAGTAGCGAGATAGTCAAACGGGAGTA 6219 29 100.0 32 ............................. TTTGTCAGCTCGTTATGTGGGGTATAGCGATA 6280 29 100.0 32 ............................. CGCATCGCGTCAGTGCGTCTGGGTGACGTTCC 6341 29 100.0 32 ............................. CCGGATCAAACATTGCTCCAGATTGCCACTGA 6402 29 100.0 32 ............................. CAGTAATTGAGGCAATTAGCGCGGCCGGCATC 6463 29 100.0 32 ............................. AATCTACTTCCTGCCGGGTCATAGGGGTACGC 6524 29 100.0 32 ............................. TTAATTCAGAAATTCAGGCAGGGGCAGCGCGT 6585 29 100.0 32 ............................. CCTATAACCGACGAGGGCAAACGCCGTGCGCG 6646 29 100.0 32 ............................. TTTTTGCGTCAAGTCCCATTTCATCTGCCTGG 6707 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 6768 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCACTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATTACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 131935-130014 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFGW01000216.1 Salmonella enterica subsp. enterica serovar Infantis strain Sal280 contig_315, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 131934 29 100.0 32 ............................. GATGATTTAAACACCCAAACGCTGGGAATAAT 131873 29 100.0 32 ............................. TTCCTGGACACTGAGACCGGATCTGATTGGGT 131812 29 96.6 32 ............................A ATTCGACGACTTTCCACTCCTGAGAGTGTGTC 131751 29 100.0 32 ............................. TAGATGCTTGTATGTGGGTGAGAGAAGAACAA 131690 29 100.0 32 ............................. CCCGCATCAACGATTTGTTGACACATCCAGAG 131629 29 100.0 32 ............................. CGCAATTAACTCACACTATTGCGCTGATATAC 131568 29 100.0 32 ............................. CGCTTCATCGACAGCGTGTTGTCGCGGTGCTT 131507 29 100.0 32 ............................. GTGGGATGGAAAAAATGGGAGCCAGTTTTAAA 131446 29 100.0 32 ............................. TATGCCACGAAAGCGGCGCGTTTCTAGCGGAG 131385 29 100.0 32 ............................. GTAGCCTTCAGACACTTTAGCCAGGTTCCCTA 131324 29 100.0 32 ............................. AGCGAAAAAAAAGACGACGAACTCGTCACAAC 131263 29 100.0 32 ............................. GCTGATATCCGCCTGATTGGTGATCTGCGTCG 131202 29 100.0 32 ............................. CTGGCGCAGGTTCGCCTTTCGGGCCTTTGAGT 131141 29 100.0 32 ............................. AATAAACGTCTTTTGCTAGGTAGCATTCTATT 131080 29 100.0 32 ............................. CGCGCCACCGAGCTATTCGGGCCGCTCGGTTC 131019 29 100.0 32 ............................. GGATTTTATGACGACTGGCCGAAATCGTACAA 130958 29 100.0 32 ............................. AAAAAATACTCTCCAAAATGAGTCAGTCCGAG 130897 29 100.0 32 ............................. AATCCACATCCTGTTTAGCTCCATATAGCCCC 130836 29 100.0 32 ............................. CCGAATTTCTCCGCGAACGCCCACCAGTCGCG 130775 29 100.0 32 ............................. AGTTCGCCAGCGGTGCCCGCGATCTGGAGCTG 130714 29 100.0 32 ............................. TCGTTTTTTTTATCGGTGTGGTTCGGTCGTAA 130653 29 96.6 32 ............................T GGCGCAACGTTCCCTGAGTCCCGGTTAATAGA 130592 29 100.0 32 ............................. ACAGACCAGACAAATAACGTATTTTCTGTTGA 130531 29 100.0 32 ............................. GCGGAGATCCGGAGGAGCTATTTCAGGTCATA 130470 29 100.0 32 ............................. TGCGGCCACGCCCGCGTAGCAGATAGCCGCCA 130409 29 100.0 32 ............................. AATAGCGTTCCTGACGTCTGAATTTCATATCC 130348 29 100.0 32 ............................. TCGATATCGAACATTTGATGCGTATTGCGGGG 130287 29 100.0 32 ............................. TCGCTTATCTTGAAATCGTCATCGGTCAGACC 130226 29 100.0 32 ............................. GATCATCACCCAGGCATTTTCTGGAATATGAA 130165 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 130104 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 130043 29 93.1 0 A...........T................ | A [130016] ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACACGTTGCTGGTATCCGTCTTTTTTACCCAGGTTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //