Array 1 852380-854134 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017667.1 Streptococcus suis strain 1081 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 852380 36 100.0 30 .................................... TGATGGGGAAAGAGATGGATGACATTGACC 852446 36 100.0 30 .................................... TTCAGTTAAAGACCAGGGCAAAGGGCTGCA 852512 36 100.0 30 .................................... TTGATGTAACGTATGCAGAACCATCACATT 852578 36 100.0 32 .................................... CTGTCGTTTGTCCACAAACAACAATAGACCCA 852646 36 100.0 31 .................................... ATTGGAAGGCAAGGCTTATAAACTTGCAGCA 852713 36 100.0 30 .................................... AGTGCTTGATGTAAGCAAGTAATTGTGCCT 852779 36 100.0 30 .................................... TCAGCGCTGGAAGATAAGGAAGAAGAATGC 852845 36 100.0 30 .................................... CCGAAGAAAAGAATTTCAGAAGTGCGCAGA 852911 36 100.0 30 .................................... TAACGATAATGGCGACACATTAACAGAAGA 852977 36 100.0 30 .................................... TTTAAGATAAATATAGTGAAGTTCTTTGTA 853043 36 100.0 30 .................................... ACGACCCGCTCCCTTGTGCTTCTCCGTACC 853109 36 100.0 30 .................................... ATAGCCGAACCTTCTAACGACAAATGCGTC 853175 36 100.0 30 .................................... GTTACATAGCCATATTCATGTCGTTTTGCA 853241 36 100.0 30 .................................... AGTTTCCGACGGTTGACCGTTTTGTGAGTT 853307 36 100.0 31 .................................... TTTCCCACTTTGCAACAGTTGGCTGTTCTTG 853374 36 100.0 30 .................................... TGAGATAGTAAGAATTTTGCTTGTCTCACA 853440 36 100.0 30 .................................... CTATGATGCCTGTACTTAATTCTTTCGCCA 853506 36 100.0 30 .................................... GCGTCGGGGCTTTTGCCTTTTGCTGTGCTT 853572 36 100.0 30 .................................... TCATTTTTTCTCATTCCAGTGAAGGCTAGC 853638 36 100.0 29 .................................... TCTTGAAAGCTAAGCTAACTCCAGCAGGA 853703 36 100.0 30 .................................... ATTCTGTTATCTGGTTAGATAGTGCTAAAT 853769 36 100.0 30 .................................... AACGGCTTTATATCAGAAAATGAATAAAGA 853835 36 100.0 30 .................................... TAAGGAGACTTTGGCTGGGGTACATGGTAA 853901 36 100.0 30 .................................... AAGAGCCTCACCCCCTTTCCTTGTATGATA 853967 36 100.0 30 .................................... TATGTGGGTATATTACCTGGCTTCTACGAT 854033 36 100.0 30 .................................... TCCTCAGAAAGGGAAAACAGAACTTATCCA 854099 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAAAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGTGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGGTTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGACTGGGGACTGGCTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //