Array 1 7106-5235 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDLR01000066.1 Carboxydocella sp. JDF658, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 7105 36 100.0 37 .................................... GAAAAATATTTGTTTGCGTCAATTCCAACAAAACCCC 7032 36 100.0 36 .................................... GAGCCTGACGGCCGGCCAGTAACCTGTTTCGTTTAT 6960 36 100.0 44 .................................... GAAGGCAAACGAGGGACGGTAAACGTAAAATCGGCCGAGTACAA 6880 36 100.0 36 .................................... GTTTTTTTGTGTAACCCCAACCTGGGCCAGCAGATG 6808 36 100.0 37 .................................... GTATATTTTGTTATAACTCCAATTGTTTTTGCCGACT 6735 36 100.0 36 .................................... GCCTTGTGGTCCGGCGATGACCTGTGCATCACCGGT 6663 36 100.0 38 .................................... GTTCACCTTGCGGGAGGTGGCAGGTTAATGCAACCACT 6589 36 100.0 40 .................................... GCAGGCGAGGAGCTTGACCATGCAGACGTGGTGGACAAAC 6513 36 100.0 38 .................................... GTTTTCTTTTCTAAGTTCCCGGATGCGTTGACCAACCA 6439 36 100.0 38 .................................... GTTGTCCTGATAGAACCTATTTCTGCTCTGGTCTGGCA 6365 36 100.0 39 .................................... GCCGGTATTTGTGTTGCCTCCACCCTCCTCCCAAAGGGC 6290 36 100.0 36 .................................... GGGATTGGCTTGCCGCCACCTATGACCCATCCAGTG 6218 36 100.0 36 .................................... GACCGCTTCAGTGGTTCTGTCCAAGTCCGGGTTACC 6146 36 100.0 43 .................................... GCGTCTCTACACTCTGCTGATTTGCAGAGAGCAGGTTAGTCGT 6067 36 100.0 39 .................................... CCTGTTGTAAAAGTTACCCAATGCATCATAAGCTGAGCT 5992 36 100.0 36 .................................... CAAATGGCAGTTCGTTTTCCTCAGCTGGAGTTGATA 5920 36 100.0 38 .................................... CTCCGCATGGTTCAGGGCCCATTCCTCCACGGCGTCTG 5846 36 100.0 36 .................................... CATTTTGATAAGAGCAATAATTATTTAACAATTTTA 5774 36 100.0 36 .................................... CTCACTATGTTCCCTGATAAACTGCTCTACCTCTTC 5702 36 100.0 35 .................................... CTTTATAAAACCGCCTATGGCGACCACCTCCCCCC 5631 36 100.0 37 .................................... CTTTGCCGATGGCATCCAACAAGTCCATGAGAACATC 5558 36 100.0 35 .................................... CCTTACCAGCTCCATGAGCCGTTTGCGGTTGAGCT 5487 36 100.0 37 .................................... CGGTTTTTGTTTTGAAGATGCGGTCATCACCCAATGC 5414 36 100.0 36 .................................... CCCAATGGCTATAAACTTGACTGGTGCGTGGCAGTA 5342 36 100.0 36 .................................... CCCAATGGCTATAAACTTGACTGGTGCGTGGCAGTA 5270 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 26 36 100.0 37 CTTTAAACATCTCCTAATTCCCATTGGGAATTGAAA # Left flank : AATCGTCTATGATATCAGGGATGACAGACGGAGGAACAAGATCTACAGGATTTTGAAAGATTATGCCACACCAGTTCAGCTTTCTGTTTTTGAGGCTGTCTTAACGAAGGAGAAAATAGTACAACTCCAGTATAGTTTGAAACGATTGATGAAAAACGAGGATAGTATTATCTTTTATCGCCAGTGTGGCCATTGCCGACAGGATATACTAAGGTTGGGCAGCACTCCGGTTCCTTACGGAGAAGGAGACATAATAATATAATTTCCGGGTCAACCGGAAATTTTTTTTGCAGAAGGTATTGATTGGAAGAGTGGGATAGTGTAAAATATATTGCGAGAGGTTGGAGGTTGGCAGAAAAGCCGGGACCCTCTCGAGTCAGCATTATCAAGGGTTTGCTGGATTTTAGATTTTTTGAAATGTCATTATATATGGGGTTTAGAATAACCTCTCGCAAAATGGCTCTGAAAGCCTTGATTATCAAGACTTTCAGAGGGGCGCT # Right flank : CTTACAATATGGTGGAACTCATTAGCTAACTTAATCTTTGTTTTCGGTAAAATAAAAATCAAGCAAATGGAAATTTAAAAATCAAGCACAAAACTGGAAAAAAAACATTGCCGGCACCCCTCAAAAACTGTACCCTTTAGTTGACTAGGCTAAAGGGGGTAAAGAAAGGATGCTAGCAATGGATCAAATCTATAATATCAGATTTCAGGCAATTAGGAAAGGAAAATCTCTAAGAAGTATCGCCAGAGATACTGGGCATGATTTTGCTACAGTTAAGAAATACGTCAATAAAGAAGATTTTAATGAGGTAAAACAAAGACGGCAAAGGGAAAGCAAGCTTGAACCATACAAATATCTTATTGATGAATGGTTACAAGAAGATTTAAAGGCAAAGCCCAAACAGAGACATACTGCCCAACGGGTATATGATAGGCTTAAAGAAAAATTCGGTGAAGAGTTTGAAATCTCGAGCCGCACTGTTAGGTCCTACGTTGCTCAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACATCTCCTAATTCCCATTGGGAATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.60,-5.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 8685-15730 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDLR01000003.1 Carboxydocella sp. JDF658, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =========================================== ================== 8685 30 100.0 36 .............................. GAAACTGTGGGGTAAGTGTCTATCCTATCGGGTACA 8751 30 100.0 36 .............................. AAAAAATTTGCCAGCTTCATTACAGTCTCAAAATCG 8817 30 100.0 35 .............................. CAAGGTACACGTCTAACCTTGTACCCCGCCCGCTG 8882 30 100.0 36 .............................. GGCTGACAGAGCGCTTGCCTCACATGCAAGAGGTCA 8948 30 100.0 37 .............................. GCAAACTCTCTTCCTGATCCTGCTTTTTCACTTCACC 9015 30 100.0 38 .............................. GGGATAAAATGTAATTGTATCCCACCTCAACTCAATTG 9083 30 100.0 39 .............................. GACAGTATTGCACTGCTAGACATATGTTTGAAAAGCGGA 9152 30 100.0 39 .............................. GTCGTAAATCGGATAAAAGTTATAGACTTTATCCGAAAC 9221 30 100.0 35 .............................. GTATCTCAAATGGCTGGGCAAGTGCCGAAAAGAGG 9286 30 100.0 38 .............................. TGTCACGCCTGCCAGAGAGCCGCAGGTCCGCAATTGGC 9354 30 100.0 36 .............................. GATATTATATCATCACAACTGAGGACGAGCTGGAAG 9420 30 100.0 39 .............................. TTATTTCTTTTAATTAGTTCGGGAATAACCCTTTTTACA 9489 30 100.0 38 .............................. CGCTTTTATCCCCAGAGCGGCAGCCCTGTTTGCAAGCG 9557 30 100.0 37 .............................. ACAGTTTGGCATAAAGGTTGCCAAACCGGAGCGAACG 9624 30 100.0 34 .............................. GCAGATAGAAGGCTGGCTGGCTCAAGGGAAAACG 9688 30 100.0 40 .............................. GGAAATGACCAAGAGGAACATTCAGGCAACAGAAAGGCAA 9758 30 100.0 39 .............................. GAGTCATGGCAACAGGCGGGTCGTACTTTTGTCTTTCTA 9827 30 100.0 36 .............................. CCGACAAGTTCTTCATTGGGTAATACCAGCGTCCCG 9893 30 100.0 37 .............................. TTCATACTCGGCAATTGCACCTCGCATACTGTAGAAG 9960 30 100.0 36 .............................. GGGCCGGGGGCTATTTCACCCAGCCCTATCCGGCCT 10026 30 100.0 38 .............................. TACTCGTTTAGGACCTGCCTTACAATCTCCTGCTCACC 10094 30 100.0 37 .............................. CCGCAGAGCTAATAGCAAATCAATTAGAAGTATTAGC 10161 30 100.0 36 .............................. TAGGTAATTGCTTCATTATTTAATTTCTTATCTTCC 10227 30 100.0 38 .............................. GGTCGCTGATGATAACATAGGCATGCACTGGTTTCTGT 10295 30 100.0 38 .............................. GCCTTGTAAAGCAGTTCGGCATTGGTCATGGTAAATTG 10363 30 100.0 35 .............................. ACTTTCTCTACGATTAAAGCAATACTCACAATAGT 10428 30 100.0 35 .............................. GGCATTGTTATGCGATATAGTTCGTCCACTAAAAA 10493 30 100.0 35 .............................. GATGCAAAATCTAACATGGCTTTTTCTTTATGTTC 10558 30 100.0 38 .............................. GAACTTCAAAAGTAGGTTGTCTTTTACCAGACTCTATT 10626 30 100.0 37 .............................. CCAATAGCATTGAACTGTTTTAGCAAGGTGTACAAAT 10693 30 100.0 36 .............................. GTTTTATGGATATTGGAAAGCATATCAAAAAACTTA 10759 30 100.0 38 .............................. ATCGAAGTCTCACGTTTACGTGGGAGGTTGATGTAGAA 10827 30 100.0 36 .............................. TACTTTCGCAGATTTCAAAAACTGGTGCGGCTCATC 10893 30 100.0 36 .............................. ATGGCGAACCGCATCGCTGGCGAGCTGGGCAAAAAG 10959 30 100.0 36 .............................. ATGAGCGCAAGAGAGGCGCAGGGGCTACTAAAAAAC 11025 30 100.0 38 .............................. AACAAAATCGCTTCACATTCTATTTTTCTTATCTGTCT 11093 30 100.0 36 .............................. ATCTTTCAAAATGTCAATTGTTTTCAGCATTTTAAC 11159 30 100.0 37 .............................. TCTGGTATGATTACCTTCGTATATGCTTATAATTTAA 11226 30 100.0 36 .............................. AGCATCAGGCCAAGTGTGACCAGCTTGGTCTTTTCT 11292 30 100.0 35 .............................. GTTTCCTGGGATGGTCGGAAGTACTGCCCGTCAAA 11357 30 100.0 35 .............................. CTTGGCTGCATCTTCGGGTGGGTCCACCGGGAGAC 11422 30 100.0 35 .............................. AGGAGGTTGACAGCAATGAAATGCGGTGCTTGCGG 11487 30 100.0 36 .............................. GTGTCGCTGTCTTCCGGTCGTGGCATGGCTTGCACA 11553 30 100.0 35 .............................. TTTGCAGGGGAAAAGGTTGTCCATCCTTAAACCAA 11618 30 100.0 40 .............................. CTTCTTTAAGTGTTCTTCTGCTGTCATTCCACACTCAACA 11688 30 100.0 37 .............................. GTATCAGGAAAAACATATACTTACTATGTTGAGATCA 11755 30 100.0 36 .............................. ATCTAAAAAGACTTGAAATTTCTGTCTATACCATTC 11821 30 100.0 35 .............................. TCACATACCCATTCATTGTCAATGTTTATATCCAT 11886 30 100.0 37 .............................. GTGTAGGTTGCATTAGCACCTAAAGCAGTCGTGCTAT 11953 30 100.0 37 .............................. CTTTTTCTTTATCAGCGTAAAAAGCTGTTCTTGCTTC 12020 30 100.0 37 .............................. GTGTAGGTTGCATTAGCACCTAAAGCAGTCGTGCTAT 12087 30 100.0 38 .............................. CAGGTTAGCCCCCCGCAGGTTAGCCTCCTCTAAGTTAG 12155 30 100.0 35 .............................. TTAATAAAACCAGTGTATTTTCGTCCTCCGGCAAT 12220 30 100.0 36 .............................. GCTTGTTCACCCAATACCTCGATAGTCTCTGTGATT 12286 30 100.0 36 .............................. CTCAATAGCTGCTAAAAGCAAAAGGAGGTATGTAAA 12352 30 100.0 38 .............................. TAGTAACATCTCTTTTGCATGCTCAATAGTGGCTTTAT 12420 30 100.0 37 .............................. CTGTAACTTCGTAACTTGTCGAAAACGACTATAAAGT 12487 30 100.0 36 .............................. TTCCCTCTAGGAGGTAAATATATAATTATTCCAAGG 12553 30 100.0 37 .............................. TATGGAGATCACAGAGGAACTCACAAAAGAAGAAGTC 12620 30 100.0 38 .............................. TCAAAGAAAATCAACCAGCTGCCAACCTCCCCTCTTCC 12688 30 100.0 37 .............................. TTATATCAAGATGGTTGAGGATGAGGAAGCTGATGAA 12755 30 100.0 37 .............................. TTATTTCATCCGGTAATGTTTCAGGTACATCCAGGGA 12822 30 100.0 36 .............................. ATTGGTGCAGGCACATTGGGCGCAATGCACTGCAGA 12888 30 100.0 37 .............................. ACTGTTACCTTTGTATTTTGCTTCGGCAGCCTTATCT 12955 30 100.0 38 .............................. GCACGAAGTCCGGTTCCGGCATCTTGCCCCTCTTCCGC 13023 30 100.0 36 .............................. CAGAAAGATATGTTATTGCCAGACTGGATATGGGGG 13089 30 100.0 36 .............................. GTAGCGGATTTCCTCTTTCTTTTCCTCGAAAAATCC 13155 30 100.0 37 .............................. AGCTTTGCTGTTGTGTATCTGTGGCTCTGCACCGTAT 13222 30 100.0 37 .............................. GGTAAAATATGTTGAGGGGAATACGTTTTTGCAAATG 13289 30 100.0 37 .............................. TGTGGTTAACATATCTTGCAAAGTCTCGCTGGTATCT 13356 30 100.0 38 .............................. GGCAAACTGGTCCATGTACCCAAGCTTCAAAATCACTA 13424 30 100.0 41 .............................. TTTACCAACAATTTTACCTTCGTTGTACTTTGCTAAATTGC 13495 30 100.0 37 .............................. GTTATCAAATTGAAATTTATCGACAAAGAAAAATTCA 13562 30 100.0 36 .............................. GCAATTCAAACTCCCCTGCCTGTTTTTTTACAATAT 13628 30 100.0 37 .............................. TAAAGTCGGTTGGCAAGAGCATACCGCTAAAACAATA 13695 30 100.0 36 .............................. TTCGTTTTCAGGTACTTATTGTTGGGCTATTATGTC 13761 30 100.0 36 .............................. TTACGCCCAAATTTTCAGCTACCGCTTGAGCAGTTT 13827 30 100.0 35 .............................. GAATATGGCGAATAGGACGCATGGCAGCAAGATAA 13892 30 100.0 36 .............................. AATTGAAGCTGAAGCGGGCAACATACAGGCACATTG 13958 30 100.0 37 .............................. ATATTATAGCGTTTATGGAAACAAATCATTGTACCTA 14025 30 100.0 37 .............................. TCGCCGTAAGCAATTGCACCAGCGCCGAAAATATAGG 14092 30 100.0 35 .............................. ATTGTCCAGGCACTCATGAACTAAATCATAATAAG 14157 30 100.0 36 .............................. CAAGCTGGGGTTTCTTAAGATGTGTTTCAGGAGAAC 14223 30 100.0 36 .............................. GAAGGAATAGCTATACATGTCGACCGTGGAGGAGGC 14289 30 100.0 36 .............................. GACGCGCAGTACAATGCAGGCGTCTGGCTTATTAAT 14355 30 100.0 37 .............................. GAAGATCTACCGGACCGCATCTGCATTTTGGGATTAA 14422 30 100.0 37 .............................. TGAAAATTGCTGGTTATAGGGGGGTAATACCCTCTGA 14489 30 100.0 36 .............................. TCATCACGGGACACGACGGCCACGGTATGCAGTTAA 14555 30 100.0 35 .............................. GAGCAAAGACAGCTACTGACTGCTTTCCTCAAAAG 14620 30 100.0 37 .............................. GAGTTTCCCAAACCACTGGGATAGCCTCACCTATATT 14687 30 100.0 36 .............................. CTGGGCATGCTTGTCCAACCTCAGCCTGCAGAAGTG 14753 30 100.0 36 .............................. TATACTTGTTATCCCTGTACTCTGTGGGGATGCCGA 14819 30 100.0 38 .............................. GTTAATAAATTCGTTATCAGTTCGAGCAATCAGTTGCG 14887 30 100.0 36 .............................. CAATCGGACGTTCCCGCTCTATCCTGTCCCTCACCA 14953 30 100.0 36 .............................. CTACTGCCCACGACTCCCCAGTTTAACTGCATACCG 15019 30 100.0 37 .............................. CCCCCCCTAACGACCCCCCACCGACATATTGTTGGCC 15086 30 100.0 43 .............................. ATGCGTGTATGTATCCACTTGTCCAGGCTCATTTGCCTGCAAG 15159 30 100.0 37 .............................. TTGTTCGTTTTCGAACCGGACGGCATACTCAGCACCA 15226 30 96.7 38 ........................A..... TGACTGAACTTCTGCCGATGTCCAGCCCTACTAGCATG 15294 30 100.0 37 .............................. TTCTTCTTTGGTGTTTGGTTTTAGGACAACCTCTCCC 15361 30 100.0 35 .............................. CAGTTTCTGTTGCCAGCGTTCATGACCGCCCGCAA 15426 30 100.0 38 .............................. GCAACATATCAAAGCGTCCAGCCCTTGCATCAGCCAGC 15494 30 100.0 42 .............................. GCTGCTGACGGTTCTGGGGTCTTGGTTGGTCAGGGCCGACAT 15566 30 100.0 38 .............................. TTAGAATTGTAGGCTATTTTAAACAATTCACTGATAAA 15634 30 100.0 37 .............................. GGCACTACGGCCCTCTTGTAACGTTTGGTGTTTCTGC 15701 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =========================================== ================== 106 30 100.0 37 GTCTTAATAGAACCATTGTGGGATGGAAAC # Left flank : AGTAAAATTGGAGGCCTATCGATTGATCAAACATCTCATTGGTGATGAAAAATATAAAGGGTTTAGAGCGTGGTGGTAATATGTATATAGTCATTGTTTATGATATTGGAGAAAAAAGAGTTGCGAAGGTATGCAAGTTTTTAAGGAAATATCTTTATTGGGTACAAAACTCTGTATTTGAAGGAGACTTGACAGAAAGTCAATTTGAAAAAGTAAAACATGGATTAAAAAAATTAATAAAAGAAGATGAAGATATGGTGTTGTACTATGTTTTTTCCACTCCTAAATGGGTTGAAAGAGGAATTTTAGGTAAAGAGAAAAATCCCATTGATGCTTTTTTGTAAATACAGCAGGAAAAGAAGGGAGAGGTATAGAATAGATATATGTGTAAATTAATTGTTATCGTCGCTACCCCAGCATAATTACATTATTATAGGTAGACGACATTTTTGGCTTACTAACCATCCTGAAAGCCTTATTTTTTCTGGCTTTCAGGATGG # Right flank : CAAGCAATTTCAGACAAAGGGGACGGTTCCTTTCGTCTAAAAATTTATTTTGTAAGGAGAGGGTGTTTCATGAAGATAGTTAAAATGAAGGATGTAATAAAATGTTTGGTGATGTTATAGCTTTAGACAATGTAAATTTAGAAATAGAGGAAGGAGAAATTTACGGTCTATTGGGGCGTAATGGGGCAGGTAAGACAACAGCTATAAGCATAATCTGCGGCTTGCTCAATTTTGATAGAGGAAAGGTGTATGTTTTTGATAAAAATATACGCAAAGAACCGGAATTCATAAAGAAGAGTATAGGTATTGTGCCGTCTTTTTCTTAGGTGGAAGATTGGATTCGCAACGAATTCTGCGAATAGTAGAGGGGCTGACAGTAATCCCCTCATGCTCGGATAGTAATTGGGCTAAATGATGCTCATTTGATAAAGCATGTGCCGGTTTTCGCCCGCGGTTTTTATGGATAATTCCGGTTTCTCCCTCCTCCAAGATTCTTTGTA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATAGAACCATTGTGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //